Guide to the Human Genome
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Name: ZNF48 Sequence: fasta or formatted (618aa) NCBI GI: 22749325
Description:

zinc finger protein 48

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         33           2
 C cysteine            4.0         25           1
 D aspartate           4.2         26           2
 E glutamate           6.6         41           2
 F phenylalanine       3.2         20           1
 G glycine            11.0         68           2
 H histidine           5.3         33           2
 I isoleucine          1.9         12           1
 K lysine              6.5         40           1
 L leucine             6.6         41           2
 M methionine          0.6          4           1
 N asparagine          0.8          5           1
 P proline            12.9         80           5
 Q glutamine           3.9         24           1
 R arginine            9.5         59           2
 S serine              7.3         45           2
 T threonine           4.2         26           1
 V valine              3.9         24           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 48 
ZNF16                 0.268   zinc finger protein 16 
ZNF16                 0.268   zinc finger protein 16 
ZNF629                0.265   zinc finger protein 629 
LOC100287429          0.264   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.264   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.264   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.264   zinc finger protein 84 
ZNF84                 0.264   zinc finger protein 84 
ZNF135                0.264   zinc finger protein 135 
ZNF189                0.262   zinc finger protein 189 isoform 2 
ZNF189                0.262   zinc finger protein 189 isoform 1 
ZNF184                0.254   zinc finger protein 184 
ZNF345                0.251   zinc finger protein 345 
ZNF594                0.250   zinc finger protein 594 
ZSCAN2                0.246   zinc finger protein 29 isoform 1 
ZNF93                 0.246   zinc finger protein 93 
ZNF585A               0.246   zinc finger protein 585A 
ZNF585A               0.246   zinc finger protein 585A 
ZNF836                0.246   zinc finger protein 836 
ZNF585B               0.244   zinc finger protein 585B 
ZNF268                0.244   zinc finger protein 268 
ZNF615                0.244   zinc finger protein 615 
ZNF23                 0.243   zinc finger protein 23 
ZNF224                0.243   zinc finger protein 224 
ZNF726                0.241   PREDICTED: zinc finger protein 726 
ZNF726                0.241   PREDICTED: zinc finger protein 726 
ZNF726                0.241   PREDICTED: zinc finger protein 726 
ZNF208                0.240   zinc finger protein 208 
ZNF665                0.237   zinc finger protein 665 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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