Guide to the Human Genome
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Name: TSPYL1 Sequence: fasta or formatted (437aa) NCBI GI: 62988322
Description:

TSPY-like 1

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         39           3
 C cysteine            0.9          4           1
 D aspartate           3.7         16           1
 E glutamate          12.8         56           3
 F phenylalanine       3.4         15           3
 G glycine             7.8         34           2
 H histidine           2.3         10           1
 I isoleucine          5.0         22           3
 K lysine              3.9         17           2
 L leucine             7.1         31           2
 M methionine          2.3         10           1
 N asparagine          2.1          9           1
 P proline             6.9         30           5
 Q glutamine           5.7         25           2
 R arginine            9.2         40           3
 S serine              5.5         24           2
 T threonine           3.4         15           2
 V valine              6.2         27           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.8          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TSPY-like 1 
TSPYL6                0.536   TSPY-like 6 
TSPYL4                0.440   TSPY-like 4 
TSPYL5                0.272   TSPY-like 5 
TSPYL2                0.265   TSPY-like 2 
LOC728395             0.210   PREDICTED: similar to testis specific protein, Y-li...
LOC728132             0.208   PREDICTED: similar to testis specific protein, Y-li...
LOC100289087          0.208   PREDICTED: hypothetical protein XP_002344239 
LOC728403             0.208   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY3                 0.206   testis specific protein, Y-linked 3 
TSPY1                 0.204   testis specific protein, Y-linked 1 
TSPY2                 0.203   testis specific protein, Y-linked 2 
SET                   0.161   SET translocation (myeloid leukemia-associated) iso...
SET                   0.161   SET translocation (myeloid leukemia-associated) iso...
LOC646817             0.149   PREDICTED: similar to SET translocation 
LOC646817             0.149   PREDICTED: similar to SET translocation 
LOC646817             0.149   PREDICTED: similar to SET translocation 
LOC389217             0.135   PREDICTED: similar to SET translocation 
LOC389217             0.135   PREDICTED: similar to SET translocation 
LOC389217             0.135   PREDICTED: similar to SET translocation 
NAP1L3                0.043   nucleosome assembly protein 1-like 3 
LOC727969             0.042   PREDICTED: similar to hCG1807781 
LOC727969             0.042   PREDICTED: similar to TSPY-like 2 
LOC727969             0.042   PREDICTED: similar to hCG1807781 
NAP1L2                0.032   nucleosome assembly protein 1-like 2 
NAP1L1                0.030   nucleosome assembly protein 1-like 1 
NAP1L1                0.030   nucleosome assembly protein 1-like 1 
LOC100130208          0.029   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.029   PREDICTED: hypothetical protein 
NAP1L4                0.028   nucleosome assembly protein 1-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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