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Search of human proteins with 61966721
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61966721 Tctex1 domain containing 4 [Homo sapiens] 449 e-127
gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [H... 170 1e-42
gi|229090471 Tctex1 domain containing 2 [Homo sapiens] 72 5e-13
gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens] 61 9e-10
gi|239735600 Tctex1 domain containing 1 [Homo sapiens] 58 6e-09
gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens] 44 8e-05
gi|197100900 iroquois homeobox 2 [Homo sapiens] 40 0.002
gi|39930475 iroquois homeobox 2 [Homo sapiens] 40 0.002
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] 38 0.008
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] 38 0.008
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] 38 0.008
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] 38 0.008
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 37 0.017
gi|18641360 collectin sub-family member 12 [Homo sapiens] 37 0.017
gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-ty... 36 0.023
gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo ... 36 0.023
gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo ... 36 0.023
gi|91208420 bassoon protein [Homo sapiens] 36 0.023
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.039
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 35 0.039
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.051
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.051
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 35 0.051
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 35 0.051
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 35 0.051
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 35 0.051
>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
Length = 221
Score = 449 bits (1156), Expect = e-127
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAAS 60
MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAAS
Sbjct: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAAS 60
Query: 61 FSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLPLAPARWVAPSYRTEPVPGERWEA 120
FSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLPLAPARWVAPSYRTEPVPGERWEA
Sbjct: 61 FSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLPLAPARWVAPSYRTEPVPGERWEA 120
Query: 121 ARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRA 180
ARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRA
Sbjct: 121 ARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRA 180
Query: 181 GQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE 221
GQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE
Sbjct: 181 GQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE 221
>gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [Homo
sapiens]
Length = 127
Score = 170 bits (430), Expect = 1e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Query: 138 ACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARD 197
ACYSSDE ARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARD
Sbjct: 44 ACYSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARD 103
Query: 198 GLASVSYTNTSLFAVATVHGLYCE 221
GLASVSYTNTSLFAVATVHGLYCE
Sbjct: 104 GLASVSYTNTSLFAVATVHGLYCE 127
Score = 79.3 bits (194), Expect = 2e-15
Identities = 36/36 (100%), Positives = 36/36 (100%)
Query: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSID 36
MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSID
Sbjct: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSID 36
>gi|229090471 Tctex1 domain containing 2 [Homo sapiens]
Length = 142
Score = 71.6 bits (174), Expect = 5e-13
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 91 VSFS---GLPLAPARWVAP--SYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEA 145
VSFS G+P A P +Y PV +R+ + + + A L L +A YS +E
Sbjct: 7 VSFSVGDGVPEAEKNAGEPENTYILRPVFQQRFRPSVVKDCIHAVLKEELANAEYSPEEM 66
Query: 146 ARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYT 205
+L + L E + +L+E+ RYK+V VV+G + G+GV + SR WD D +
Sbjct: 67 PQLTKHLSENIKDKLKEMGFDRYKMVVQVVIGEQRGEGVFMASRCFWDADTDNYTHDVFM 126
Query: 206 NTSLFAVATVHGLY 219
N SLF V G +
Sbjct: 127 NDSLFCVVAAFGCF 140
>gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens]
Length = 198
Score = 60.8 bits (146), Expect = 9e-10
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 105 APSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELS 164
A SYR EP+ ++++A + ++ L L D Y + L EL +++ + ++E
Sbjct: 84 ANSYRMEPL--KKFQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFG 141
Query: 165 PPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE 221
RYK + V+ + GQ +++ SR +WD+A D + + S A+ V LY E
Sbjct: 142 YHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE 198
>gi|239735600 Tctex1 domain containing 1 [Homo sapiens]
Length = 179
Score = 58.2 bits (139), Expect = 6e-09
Identities = 30/108 (27%), Positives = 55/108 (50%)
Query: 114 PGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCS 173
P + + L+ + + L Y + ++ + + E + ++++L PRYKL+
Sbjct: 72 PPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVI 131
Query: 174 VVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE 221
V +G Q + + SR LWD D +S + N+SLFA+A V+ +Y E
Sbjct: 132 VHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAVYLE 179
>gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]
Length = 113
Score = 44.3 bits (103), Expect = 8e-05
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 127 LEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHV 186
++ A+ + + Y + + + EQ +L +L P +K + + V+ + G G+H
Sbjct: 21 VKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP-FKYIVTCVIMQKNGAGLHT 79
Query: 187 VSRALWDVARDGLASVSYTNTSLFAVATVHGL 218
S WD + DG +V + N +++ + + GL
Sbjct: 80 ASSCFWDSSTDGSCTVRWENKTMYCIVSAFGL 111
>gi|197100900 iroquois homeobox 2 [Homo sapiens]
Length = 471
Score = 39.7 bits (91), Expect = 0.002
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 23 PSPVRPRGC--LPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPS 80
P PRG P P P PA + S+ +A S ++ SL GPG GP G +
Sbjct: 299 PPEAAPRGGRKTPQGSRTSPGAPPPASKPKLWSLAEIATSDLKQPSL-GPGCGPPGLPAA 357
Query: 81 LGPV----PPLGSRVSFSGLPLAPARWVAPSYRTEPVPGERWEAARAQRAL---EAALAA 133
P PP GS S L P + +P Y G A + Q L AA A
Sbjct: 358 AAPASTGAPPGGSPYPASPLLGRPLYYTSPFYGNYTNYGNLNAALQGQGLLRYNSAAAAP 417
Query: 134 G--LHDACYSSDEAAR 147
G LH A ++ +A +
Sbjct: 418 GEALHTAPKAASDAGK 433
>gi|39930475 iroquois homeobox 2 [Homo sapiens]
Length = 471
Score = 39.7 bits (91), Expect = 0.002
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 23 PSPVRPRGC--LPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPS 80
P PRG P P P PA + S+ +A S ++ SL GPG GP G +
Sbjct: 299 PPEAAPRGGRKTPQGSRTSPGAPPPASKPKLWSLAEIATSDLKQPSL-GPGCGPPGLPAA 357
Query: 81 LGPV----PPLGSRVSFSGLPLAPARWVAPSYRTEPVPGERWEAARAQRAL---EAALAA 133
P PP GS S L P + +P Y G A + Q L AA A
Sbjct: 358 AAPASTGAPPGGSPYPASPLLGRPLYYTSPFYGNYTNYGNLNAALQGQGLLRYNSAAAAP 417
Query: 134 G--LHDACYSSDEAAR 147
G LH A ++ +A +
Sbjct: 418 GEALHTAPKAASDAGK 433
>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
Length = 761
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 6 LPPGRQEEENAKDSGRKPSPVRPRGC-LPSIDEARPAGPGPAPASRRGSMLGLA------ 58
LPP RQ+ +SGR P R +PS+D+ + P +SR + L
Sbjct: 576 LPPQRQDRF-CSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNVPD 634
Query: 59 ASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSF--SGLPLAPARWVAPSYRTEPVPGE 116
+S N GPG P P GP+ P+ +R F G P P P PG
Sbjct: 635 SSLPAENEATGPGFVPPPLAPIRGPLFPVDARGPFLRRGPPFPP-----------PPPGA 683
Query: 117 RWEAAR 122
+ A+R
Sbjct: 684 MFGASR 689
>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
Length = 804
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 6 LPPGRQEEENAKDSGRKPSPVRPRGC-LPSIDEARPAGPGPAPASRRGSMLGLA------ 58
LPP RQ+ +SGR P R +PS+D+ + P +SR + L
Sbjct: 619 LPPQRQDRF-CSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNVPD 677
Query: 59 ASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSF--SGLPLAPARWVAPSYRTEPVPGE 116
+S N GPG P P GP+ P+ +R F G P P P PG
Sbjct: 678 SSLPAENEATGPGFVPPPLAPIRGPLFPVDARGPFLRRGPPFPP-----------PPPGA 726
Query: 117 RWEAAR 122
+ A+R
Sbjct: 727 MFGASR 732
>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
Length = 775
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 6 LPPGRQEEENAKDSGRKPSPVRPRGC-LPSIDEARPAGPGPAPASRRGSMLGLA------ 58
LPP RQ+ +SGR P R +PS+D+ + P +SR + L
Sbjct: 590 LPPQRQDRF-CSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNVPD 648
Query: 59 ASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSF--SGLPLAPARWVAPSYRTEPVPGE 116
+S N GPG P P GP+ P+ +R F G P P P PG
Sbjct: 649 SSLPAENEATGPGFVPPPLAPIRGPLFPVDARGPFLRRGPPFPP-----------PPPGA 697
Query: 117 RWEAAR 122
+ A+R
Sbjct: 698 MFGASR 703
>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
Length = 792
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 6 LPPGRQEEENAKDSGRKPSPVRPRGC-LPSIDEARPAGPGPAPASRRGSMLGLA------ 58
LPP RQ+ +SGR P R +PS+D+ + P +SR + L
Sbjct: 607 LPPQRQDRF-CSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNVPD 665
Query: 59 ASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSF--SGLPLAPARWVAPSYRTEPVPGE 116
+S N GPG P P GP+ P+ +R F G P P P PG
Sbjct: 666 SSLPAENEATGPGFVPPPLAPIRGPLFPVDARGPFLRRGPPFPP-----------PPPGA 714
Query: 117 RWEAAR 122
+ A+R
Sbjct: 715 MFGASR 720
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 36.6 bits (83), Expect = 0.017
Identities = 39/115 (33%), Positives = 45/115 (39%), Gaps = 18/115 (15%)
Query: 43 PGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSR---VSFSGLPLA 99
P A RR LG S + R GPG+ P PS GP PP G R V G ++
Sbjct: 44 PRRAGRGRRWGSLGTNGSLTGR----GPGSPP--LPPSAGPAPPPGLREAWVGGGGGRVS 97
Query: 100 PARW-------VAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAAR 147
PA +AP R P RWE A A L +A D D A R
Sbjct: 98 PAPGAGLTRGPLAPLGRRRHAP--RWEPAAAGALLGPMVALSQRDCSRDRDGAGR 150
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 36.6 bits (83), Expect = 0.017
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNS 66
PPG + K +P P P G E P GP P R G G S + S
Sbjct: 459 PPGPTGNKGQKGEKGEPGPPGPAG------ERGPIGPAGPPGERGGK--GSKGSQGPKGS 510
Query: 67 LVGPGAGPGGQRPSLGPVPP 86
PG PG Q PS P PP
Sbjct: 511 RGSPGK-PGPQGPSGDPGPP 529
>gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-type
1 [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.023
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 124 QRALEAALAAG-LHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQ 182
+ A+E+ + AG + Y + + + EQ +L +L P +K + + V+ + G
Sbjct: 21 KEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLPKLGKP-FKYIVTCVIIQKNGA 78
Query: 183 GVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 218
G ++ S WD + DG +V + N +++ + GL
Sbjct: 79 GSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
>gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo
sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.023
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 124 QRALEAALAAG-LHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQ 182
+ A+E+ + AG + Y + + + EQ +L +L P +K + + V+ + G
Sbjct: 21 KEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLPKLGKP-FKYIVTCVIIQKNGA 78
Query: 183 GVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 218
G ++ S WD + DG +V + N +++ + GL
Sbjct: 79 GSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
>gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo
sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.023
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 124 QRALEAALAAG-LHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQ 182
+ A+E+ + AG + Y + + + EQ +L +L P +K + + V+ + G
Sbjct: 21 KEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLPKLGKP-FKYIVTCVIIQKNGA 78
Query: 183 GVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 218
G ++ S WD + DG +V + N +++ + GL
Sbjct: 79 GSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 36.2 bits (82), Expect = 0.023
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Query: 5 PLPPGRQEEENAKD----SGRKPSPVRPRGCLPSIDEAR----PAGPGPAPASRRGSMLG 56
PLPPG +G+ PS G LP+ AR P PGP P
Sbjct: 15 PLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGP------- 67
Query: 57 LAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLP 97
GPG GPG L P PLG++ + S P
Sbjct: 68 ------------GPGPGPGSTSRRLDPKEPLGNQRAASPTP 96
Score = 29.3 bits (64), Expect = 2.8
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 42 GPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLPLAPA 101
GPGPAP ++ + + +GPG+GPG + G P R A A
Sbjct: 405 GPGPAPGAK-----------TEPGARMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAA 453
Query: 102 R 102
+
Sbjct: 454 K 454
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.4 bits (80), Expect = 0.039
Identities = 37/118 (31%), Positives = 43/118 (36%), Gaps = 19/118 (16%)
Query: 5 PLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGP----GPAPASRRGSMLGL--A 58
P P G + + P PRG E PAGP GPA A+ + G A
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGA 743
Query: 59 ASFSRRNSLVGP-----GAGPGGQRPSLGPVPPLGSR-----VSFSGLPLAPARWVAP 106
N +VGP AGP G GP P GSR +G P A R P
Sbjct: 744 KGPKGENGVVGPTGPVGAAGPAGPN---GPPGPAGSRGDGGPPGMTGFPGAAGRTGPP 798
Score = 32.3 bits (72), Expect = 0.33
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNS 66
PPG Q + K P P +G P GPA + GL F
Sbjct: 533 PPGPQGVQGGKGEQGPPGPPGFQGL--------PGPSGPAGEVGKPGERGLHGEFG---- 580
Query: 67 LVGPGA-----GPGGQRPSLGPVPPLGSR 90
L GP GP G+ + GP P+GSR
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSR 609
Score = 30.0 bits (66), Expect = 1.6
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 8 PGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGP-GPAPASRRGSMLGLAA--SFSRR 64
PGR A + P P G A PAGP GP + +G A F+
Sbjct: 669 PGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGP 728
Query: 65 NSLVG-PGA-------GPGGQRPSLGPVPPLGS 89
G PGA GP G+ +GP P+G+
Sbjct: 729 AGAAGQPGAKGERGAKGPKGENGVVGPTGPVGA 761
Score = 28.9 bits (63), Expect = 3.6
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 5 PLPPGRQEEENAKDSGRKPSPVRPRGC---LPSIDEARPAGPGPAPASRRGSMLGLAASF 61
P PPGR E+ P P P G + + + G GP P +GL
Sbjct: 47 PGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGP-------MGLMGPR 99
Query: 62 SRRNSLVGPG----AGPGGQRPSLGPVPPLGSR 90
+ PG GP G+ G P G+R
Sbjct: 100 GPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGAR 132
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 35.4 bits (80), Expect = 0.039
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 30 GCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGS 89
G P+ A P P PA+ R S LAA+ RR S PG GG P+PP
Sbjct: 47 GIRPAPAAAHPPAPRERPAAARLS--ALAAAQPRRRS---PGPQGGGGGDIASPLPPALQ 101
Query: 90 RVSFSGLPLAPARWVAPSYRTEPVP 114
+P AP+ P+ + P P
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPP 126
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.4 bits (80), Expect = 0.039
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 30 GCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGS 89
G P+ A P P PA+ R S LAA+ RR S PG GG P+PP
Sbjct: 47 GIRPAPAAAHPPAPRERPAAARLS--ALAAAQPRRRS---PGPQGGGGGDIASPLPPALQ 101
Query: 90 RVSFSGLPLAPARWVAPSYRTEPVP 114
+P AP+ P+ + P P
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPP 126
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 35.4 bits (80), Expect = 0.039
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 30 GCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGS 89
G P+ A P P PA+ R S LAA+ RR S PG GG P+PP
Sbjct: 47 GIRPAPAAAHPPAPRERPAAARLS--ALAAAQPRRRS---PGPQGGGGGDIASPLPPALQ 101
Query: 90 RVSFSGLPLAPARWVAPSYRTEPVP 114
+P AP+ P+ + P P
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPP 126
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 35.4 bits (80), Expect = 0.039
Identities = 39/112 (34%), Positives = 42/112 (37%), Gaps = 19/112 (16%)
Query: 20 GRKPSPVRPRGCLPS----IDEARPA--GPGPAPASR-----RGSMLGLAASFSRRNSLV 68
GR SPV G +PS ARPA G PAP R RG + L
Sbjct: 51 GRAQSPVPAAGAVPSPPAAAHPARPALRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLR 110
Query: 69 GPGAGPG----GQRPS----LGPVPPLGSRVSFSGLPLAPARWVAPSYRTEP 112
G G G G G P+ L P PP G R S L PA A R P
Sbjct: 111 GGGMGRGRPGKGPPPNPSRRLPPAPPGGRRTWLSALATGPAAGGAGRRRRSP 162
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 35.4 bits (80), Expect = 0.039
Identities = 42/129 (32%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
Query: 1 MASRPLPPGRQEEENAK-DSGRK--PSPVRPRGCLPSI----DEARPAGPG-PAPASRRG 52
+ R PPG K D GR P PV PRG + DE P PG P A RG
Sbjct: 1599 LTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERG 1658
Query: 53 --SMLGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLPLAPARWV--APSY 108
G+ + P G G+ S G P G R G P P R V P
Sbjct: 1659 LRGAPGVRGPVGEKGDQGDP--GEDGRNGSPGSSGPKGDR-GEPGPPGPPGRLVDTGPGA 1715
Query: 109 RTEPVPGER 117
R + PG+R
Sbjct: 1716 REKGEPGDR 1724
Score = 32.3 bits (72), Expect = 0.33
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 8 PGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRN-- 65
PG E K P P RG LP + RP GP G R
Sbjct: 1485 PGPLGEAGEKGERGPPGPAGSRG-LPGV-AGRPGAKGPEGPPGPTGRQGEKGEPGRPGDP 1542
Query: 66 SLVGPG-AGPGGQRPSLGPVPPLGS 89
++VGP AGP G++ +GP P G+
Sbjct: 1543 AVVGPAVAGPKGEKGDVGPAGPRGA 1567
Score = 30.4 bits (67), Expect = 1.2
Identities = 37/122 (30%), Positives = 45/122 (36%), Gaps = 29/122 (23%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPA--PASRRGSMLGLAASFSRR 64
PPG++ E+ + G P +P S E P GP A P RG
Sbjct: 1440 PPGKKGEKGDSEDGAPGLPGQPG----SPGEQGPRGPPGAIGPKGDRG------------ 1483
Query: 65 NSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLPLAPARWVAPSYRTEPVP----GERWEA 120
GP G G++ GP P GSR GLP R A P P GE+ E
Sbjct: 1484 --FPGP-LGEAGEKGERGPPGPAGSR----GLPGVAGRPGAKGPEGPPGPTGRQGEKGEP 1536
Query: 121 AR 122
R
Sbjct: 1537 GR 1538
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.0 bits (79), Expect = 0.051
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNS 66
P G + E + P + PRG LP + RP PGPA A G AA
Sbjct: 282 PAGPKGEPGSPGENGAPGQMGPRG-LPG-ERGRPGAPGPAGARGNDGATG-AAGPPGPTG 338
Query: 67 LVGPGAGPG--GQRPSLGPVPPLGS 89
GP PG G + GP P GS
Sbjct: 339 PAGPPGFPGAVGAKGEAGPQGPRGS 363
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNS 66
PPG EE + + +P P G P G P SR F +
Sbjct: 459 PPGPAGEEGKRGARGEPGPTGLPG---------PPGERGGPGSR---------GFPGADG 500
Query: 67 LVGPGAGPGGQRPSLGPVPPLGS-----RVSFSGLP 97
+ GP GP G+R S GP P GS R +GLP
Sbjct: 501 VAGP-KGPAGERGSPGPAGPKGSPGEAGRPGEAGLP 535
Score = 32.0 bits (71), Expect = 0.43
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAP-ASRRGSMLGLAASFSRRN 65
PPG E A + P G E PAGP AP A +G A R
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Query: 66 SLVGPG--AGPGGQRPSLGPVPPLGSR 90
GP AGP G + GP P G R
Sbjct: 1068 E-TGPAGPAGPVGPVGARGPAGPQGPR 1093
Score = 29.6 bits (65), Expect = 2.1
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 5 PLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGP--GPAPASRRGSMLGLAASFS 62
P PPG + ++ P+G PAGP P A R G GL +
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEA-GLPGAKG 539
Query: 63 RRNSLVGPGA-------GPGGQRPSLGPVPPLGSR 90
S PG GP GQ GP P G+R
Sbjct: 540 LTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.0 bits (79), Expect = 0.051
Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 23 PSPVRPRGCLPSIDEARPAGP--GPAPASRRGS--------------MLGLAASFSRRNS 66
P PV P G E+ PAGP P PA RG+ G A R
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGF 1111
Query: 67 LVGPGA----GPGGQRPSLGPVPPLGSR--VSFSGLP 97
PGA GP GQ+ ++G P G R V SG P
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPP 1148
Score = 31.2 bits (69), Expect = 0.73
Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 4 RPLPPGRQEEENAKDSGRK--PSPVRPRGCLPSIDEARPAGPGPAPASR--RGSMLGLAA 59
+P PPG Q E SGR P P PRG + P G AP RG G
Sbjct: 550 KPGPPGSQGE-----SGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGP 604
Query: 60 SFSR-RNSLVGPGA-----GPGGQRPSLGPVPPLGSRVSFSGLP 97
+N GP GPGG + GP P G GLP
Sbjct: 605 QGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG----LQGLP 644
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.0 bits (79), Expect = 0.051
Identities = 40/139 (28%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGL-------AA 59
PP R ++ +GR+ P P P A PAP + RGS G+ AA
Sbjct: 86 PPARA----SRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAA 141
Query: 60 SFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLPLAPA---RWVAPSYRTEPVPGE 116
S + S+ P SLG R + LP +P+ RW A P PG
Sbjct: 142 SSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGA 201
Query: 117 --RWEAARAQRALEAALAA 133
W A A AA A+
Sbjct: 202 PGTWPVGFAVAAPPAAAAS 220
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 35.0 bits (79), Expect = 0.051
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 29/84 (34%)
Query: 5 PLPPGRQEEENAKDSG---RKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAASF 61
P PPG + E + P P PRG P + RP PGP
Sbjct: 51 PFPPGAKGEVGRRGKAGLRGPPGPPGPRG--PPGEPGRPGPPGP---------------- 92
Query: 62 SRRNSLVGPGAGPGGQRPSLGPVP 85
PG GPGG P+ G VP
Sbjct: 93 --------PGPGPGGVAPAAGYVP 108
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 35.0 bits (79), Expect = 0.051
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAAS 60
+A +P PG E + P P P+G P RP GPG A A + LGL
Sbjct: 401 LAGKPGVPG---ERGLPGAHGPPGPTGPKG-EPGFT-GRPGGPGVAGALGQKGDLGLPG- 454
Query: 61 FSRRNSLVGPGAGPGGQRPSLGPVPPLG 88
+ L GP PG Q P+ GP+ P G
Sbjct: 455 ---QPGLRGPSGIPGLQGPA-GPIGPQG 478
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 35.0 bits (79), Expect = 0.051
Identities = 23/75 (30%), Positives = 30/75 (40%)
Query: 23 PSPVRPRGCLPSIDEARPAGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPSLG 82
P P R +P + R PGP+ + + G +SF R+ GAG PS
Sbjct: 1146 PGPQEERLAVPPVLTHRAPQPGPSRSEKTGKTQSKISSFLRQRPAGTVGAGGEDAGPSQS 1205
Query: 83 PVPPLGSRVSFSGLP 97
PP G S G P
Sbjct: 1206 SGPPHGPAASEWGEP 1220
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,305,467
Number of Sequences: 37866
Number of extensions: 728822
Number of successful extensions: 4603
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 481
Number of HSP's that attempted gapping in prelim test: 4019
Number of HSP's gapped (non-prelim): 1019
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.