Guide to the Human Genome
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Name: TCTEX1D2 Sequence: fasta or formatted (142aa) NCBI GI: 229090471
Description:

Tctex1 domain containing 2

Referenced in:

Dynein and Dynactin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         10           2
 C cysteine            2.8          4           1
 D aspartate           6.3          9           1
 E glutamate           9.2         13           2
 F phenylalanine       7.0         10           1
 G glycine             6.3          9           1
 H histidine           2.1          3           1
 I isoleucine          3.5          5           1
 K lysine              5.6          8           1
 L leucine             4.9          7           1
 M methionine          4.2          6           1
 N asparagine          4.2          6           1
 P proline             4.2          6           1
 Q glutamine           3.5          5           2
 R arginine            4.2          6           1
 S serine              5.6          8           1
 T threonine           3.5          5           1
 V valine             10.6         15           2
 W tryptophan          0.7          1           1
 Y tyrosine            4.2          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Tctex1 domain containing 2 
TCTEX1D1              0.185   Tctex1 domain containing 1 
TCTEX1D4              0.174   Tctex1 domain containing 4 
LOC100134242          0.133   PREDICTED: similar to Tctex1 domain containing 4 [H...
TCTE3                 0.130   t-complex-associated-testis-expressed 3 
DYNLT1                0.115   dynein, light chain, Tctex-type 1 
LOC100292882          0.107   PREDICTED: similar to dynein, light chain, Tctex-ty...
LOC100290402          0.107   PREDICTED: hypothetical protein XP_002346645 
LOC100287951          0.107   PREDICTED: hypothetical protein XP_002342481 
DYNLT3                0.074   dynein, light chain, Tctex-type 3 
KPNB1                 0.030   karyopherin beta 1 
SOX5                  0.022   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.022   SRY (sex determining region Y)-box 5 isoform a [Homo...
GBP4                  0.019   guanylate binding protein 4 
AXL                   0.019   AXL receptor tyrosine kinase isoform 2 
AXL                   0.019   AXL receptor tyrosine kinase isoform 1 
MMS19                 0.015   MMS19 nucleotide excision repair homolog 
FAM184A               0.015   hypothetical protein LOC79632 isoform 2 
FAM184A               0.015   hypothetical protein LOC79632 isoform 1 
MACF1                 0.007   microfilament and actin filament cross-linker protei...
THBS3                 0.007   thrombospondin 3 precursor 
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform ...
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.007   v-myb myeloblastosis viral oncogene homolog isoform...
CYSLTR2               0.007   cysteinyl leukotriene receptor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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