Guide to the Human Genome
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Name: TCTE3 Sequence: fasta or formatted (198aa) NCBI GI: 28372535
Description:

t-complex-associated-testis-expressed 3

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         17           2
 C cysteine            0.0          0           0
 D aspartate           4.5          9           2
 E glutamate           8.1         16           1
 F phenylalanine       4.5          9           1
 G glycine             2.5          5           1
 H histidine           2.5          5           1
 I isoleucine          7.1         14           2
 K lysine              9.6         19           2
 L leucine             8.1         16           2
 M methionine          1.5          3           1
 N asparagine          2.0          4           1
 P proline             4.5          9           2
 Q glutamine           5.6         11           2
 R arginine            6.1         12           2
 S serine              7.1         14           2
 T threonine           3.5          7           1
 V valine              7.1         14           1
 W tryptophan          2.5          5           1
 Y tyrosine            4.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   t-complex-associated-testis-expressed 3 
TCTEX1D1              0.099   Tctex1 domain containing 1 
TCTEX1D4              0.097   Tctex1 domain containing 4 
TCTEX1D2              0.094   Tctex1 domain containing 2 
LOC100134242          0.059   PREDICTED: similar to Tctex1 domain containing 4 [H...
KHDRBS1               0.027   KH domain containing, RNA binding, signal transductio...
DYNLT1                0.027   dynein, light chain, Tctex-type 1 
DYNLT3                0.024   dynein, light chain, Tctex-type 3 
LOC100292882          0.016   PREDICTED: similar to dynein, light chain, Tctex-ty...
LOC100290402          0.016   PREDICTED: hypothetical protein XP_002346645 
LOC100287951          0.016   PREDICTED: hypothetical protein XP_002342481 
BRSK2                 0.013   BR serine/threonine kinase 2 
GDF2                  0.013   growth differentiation factor 2 
C2orf77               0.011   hypothetical protein LOC129881 
C16orf68              0.011   hypothetical protein LOC79091 
CGNL1                 0.011   cingulin-like 1 
SPTBN5                0.011   spectrin, beta, non-erythrocytic 5 
TTBK1                 0.008   tau tubulin kinase 1 
NSMAF                 0.008   neutral sphingomyelinase (N-SMase) activation associ...
NSMAF                 0.008   neutral sphingomyelinase (N-SMase) activation assoc...
PCLO                  0.008   piccolo isoform 2 
PCLO                  0.008   piccolo isoform 1 
YLPM1                 0.008   YLP motif containing 1 
EML4                  0.005   echinoderm microtubule associated protein like 4 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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