Search of human proteins with 13562112

Search of human proteins with 13562112

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13562112 homeobox A3 isoform a [Homo sapiens]
         (443 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24497513 homeobox A3 isoform a [Homo sapiens]                      940   0.0  
gi|13562112 homeobox A3 isoform a [Homo sapiens]                      940   0.0  
gi|24497515 homeobox A3 isoform b [Homo sapiens]                      604   e-173
gi|84570137 homeobox B3 [Homo sapiens]                                409   e-114
gi|19923391 homeobox D3 [Homo sapiens]                                401   e-112
gi|13273315 homeobox B4 [Homo sapiens]                                143   4e-34
gi|4504465 homeobox B2 [Homo sapiens]                                 136   4e-32
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]          128   9e-30
gi|4504469 homeobox B5 [Homo sapiens]                                 127   2e-29
gi|23397672 homeobox D4 [Homo sapiens]                                127   2e-29
gi|10140847 homeobox A2 [Homo sapiens]                                122   7e-28
gi|148613882 homeobox A4 [Homo sapiens]                               122   7e-28
gi|24497538 homeobox C4 [Homo sapiens]                                116   4e-26
gi|24497540 homeobox C4 [Homo sapiens]                                116   4e-26
gi|24497517 homeobox A5 [Homo sapiens]                                112   5e-25
gi|11321638 homeobox C5 [Homo sapiens]                                107   3e-23
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                       106   5e-23
gi|15029506 homeobox D8 [Homo sapiens]                                105   8e-23
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                 102   5e-22
gi|24497526 homeobox B1 [Homo sapiens]                                102   7e-22
gi|13375632 homeobox D1 [Homo sapiens]                                 99   1e-20
gi|24497544 homeobox C6 isoform 2 [Homo sapiens]                       98   2e-20
gi|4758554 homeobox C6 isoform 1 [Homo sapiens]                        98   2e-20
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  97   2e-20
gi|169636435 caudal type homeobox 2 [Homo sapiens]                     97   4e-20
gi|121114296 caudal type homeobox 1 [Homo sapiens]                     96   7e-20
gi|13489077 homeobox A6 [Homo sapiens]                                 96   9e-20
gi|33457326 GS homeobox 1 [Homo sapiens]                               95   1e-19
gi|24497556 homeobox A7 [Homo sapiens]                                 94   2e-19
gi|23097236 homeobox A9 [Homo sapiens]                                 94   2e-19

>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score =  940 bits (2429), Expect = 0.0
 Identities = 443/443 (100%), Positives = 443/443 (100%)

Query: 1   MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG 60
           MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
Sbjct: 1   MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG 60

Query: 61  HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP 120
           HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
Sbjct: 61  HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP 120

Query: 121 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA 180
           PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
Sbjct: 121 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA 180

Query: 181 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240
           GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
Sbjct: 181 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240

Query: 241 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP 300
           NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
Sbjct: 241 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP 300

Query: 301 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI 360
           PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
Sbjct: 301 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI 360

Query: 361 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT 420
           QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
Sbjct: 361 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT 420

Query: 421 YTDLTGHHPSQGRIQEAPKLTHL 443
           YTDLTGHHPSQGRIQEAPKLTHL
Sbjct: 421 YTDLTGHHPSQGRIQEAPKLTHL 443


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score =  940 bits (2429), Expect = 0.0
 Identities = 443/443 (100%), Positives = 443/443 (100%)

Query: 1   MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG 60
           MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
Sbjct: 1   MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG 60

Query: 61  HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP 120
           HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
Sbjct: 61  HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP 120

Query: 121 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA 180
           PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
Sbjct: 121 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA 180

Query: 181 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240
           GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
Sbjct: 181 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240

Query: 241 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP 300
           NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
Sbjct: 241 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP 300

Query: 301 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI 360
           PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
Sbjct: 301 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI 360

Query: 361 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT 420
           QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
Sbjct: 361 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT 420

Query: 421 YTDLTGHHPSQGRIQEAPKLTHL 443
           YTDLTGHHPSQGRIQEAPKLTHL
Sbjct: 421 YTDLTGHHPSQGRIQEAPKLTHL 443


>gi|24497515 homeobox A3 isoform b [Homo sapiens]
          Length = 285

 Score =  604 bits (1558), Expect = e-173
 Identities = 285/285 (100%), Positives = 285/285 (100%)

Query: 159 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 218
           MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR
Sbjct: 1   MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 60

Query: 219 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 278
           PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN
Sbjct: 61  PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 120

Query: 279 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338
           SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG
Sbjct: 121 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 180

Query: 339 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 398
           TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY
Sbjct: 181 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 240

Query: 399 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 443
           GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL
Sbjct: 241 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 285



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 92  PPPPQAAPPAPQPPQ------PAPQPPA-PTPAAPPPPSSASPPQNASNNPTP 137
           P  PQ+ PP  +PPQ      PA  P + P+ A PPPP        A    TP
Sbjct: 130 PYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTP 182


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score =  409 bits (1050), Expect = e-114
 Identities = 240/476 (50%), Positives = 289/476 (60%), Gaps = 78/476 (16%)

Query: 1   MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS 57
           MQKATYYD++A  ++GGY  Y  +NGF ++   QP P  AA   +G+Y R ACSLQS  +
Sbjct: 1   MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN 59

Query: 58  AGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPA 117
           A  H K+ EL+ +C+R         P L       P P +APP   PP  AP       +
Sbjct: 60  AAPHAKSKELNGSCMR---------PGLA------PEPLSAPPGSPPPSAAPTSATSNSS 104

Query: 118 APPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE 177
               PS + PP+              P  NS T+ KQIFPWMKESRQ +K K +S  + E
Sbjct: 105 NGGGPSKSGPPKCG------------PGTNS-TLTKQIFPWMKESRQTSKLKNNSPGTAE 151

Query: 178 SCAG-----------------------DKSPPGQASSKRARTAYTSAQLVELEKEFHFNR 214
            C G                       DKSPPG A+SKRARTAYTSAQLVELEKEFHFNR
Sbjct: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211

Query: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--G 272
           YLCRPRRVEMANLLNL+ERQIKIWFQNRRMKYKKDQK KG+ +SSGG SP+ SP  P   
Sbjct: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271

Query: 273 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAA 332
             G++N++HS+  S  YE  SPP F K  Q  Y L P++Y   L  C  P    ++Y   
Sbjct: 272 TAGFMNALHSMTPS--YESPSPPAFGKAHQNAYAL-PSNYQPPLKGCGAP----QKYPPT 324

Query: 333 GAGAGGTPDYDPHAHGLQGN-GSYGTPHIQGSPVFV-GGSYVEPM-SNSGPALFGLTHLP 389
            A     P+Y+PH   LQ N G+YGTP +QGSPV+V GG Y +P+   +GP+L+GL HL 
Sbjct: 325 PA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLS 377

Query: 390 HAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH--PSQGRIQEAPKLTHL 443
           H  SG +DY GA P+    HH  GP EPHPTYTDL+ HH  P QGRIQEAPKLTHL
Sbjct: 378 HHPSGNLDYNGAPPMAPSQHH--GPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL 431


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score =  401 bits (1030), Expect = e-112
 Identities = 231/455 (50%), Positives = 283/455 (62%), Gaps = 51/455 (11%)

Query: 1   MQKATYYDSSAIYGGYPY-QAANGFAYNANQQPYPASAALGA-DGEYHRPACSLQS--PS 56
           MQKA YY++  ++GGY Y +  + + Y+   QPYP  AA  + D +Y   ACS+QS  P 
Sbjct: 17  MQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPL 76

Query: 57  SAGGHPKAHELSEACLRTLSAPP------SQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQ 110
            A  H K  EL+ +C+R  +         SQPP L                 QPPQP P 
Sbjct: 77  RAPAH-KGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQ-------------QPPQPPPP 122

Query: 111 PPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKT 170
           PP   P++P  P    P +     P   NA+ S    S T++KQIFPWMKESRQN+KQK 
Sbjct: 123 PPTLPPSSPTNPGGGVPAKKPKGGP---NASSS----SATISKQIFPWMKESRQNSKQKN 175

Query: 171 SSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 230
           S +++GESC  DKSPPG AS KR RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL
Sbjct: 176 SCATAGESCE-DKSPPGPAS-KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 233

Query: 231 TERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSL--VNSVP 288
           TERQIKIWFQNRRMKYKKDQK KG+L S   QSP RSP   GA G++     L  V  + 
Sbjct: 234 TERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLA 293

Query: 289 YEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHG 348
           Y+  SPP F+K     YGL  A+Y A L SC    P QKRY A        P+++PH   
Sbjct: 294 YDAPSPPAFAKSQPNMYGL--AAYTAPLSSCL---PQQKRYAA--------PEFEPHPMA 340

Query: 349 LQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGH 408
             G G + + ++QGSPV+VGG++VE M+ +   +F L HL H +S ++DY  A  +   H
Sbjct: 341 SNG-GGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNH 399

Query: 409 HHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 443
           HH  GP +PHPTYTDL+ HH SQGR+ EAPKLTHL
Sbjct: 400 HH--GPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL 432


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score =  143 bits (360), Expect = 4e-34
 Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 20/188 (10%)

Query: 89  PLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNS 148
           P  PPPP   PP P PP  +P+ PAP PA    P      +  S++P P   A++PL  S
Sbjct: 71  PGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPS 130

Query: 149 PT--VAKQ--IFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLV 204
           P+    K+  ++PWM+        K   S+   + AG +        KR+RTAYT  Q++
Sbjct: 131 PSHSACKEPVVYPWMR--------KVHVSTVNPNYAGGEP-------KRSRTAYTRQQVL 175

Query: 205 ELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 264
           ELEKEFH+NRYL R RRVE+A+ L L+ERQIKIWFQNRRMK+KKD K       SGG + 
Sbjct: 176 ELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAG 235

Query: 265 SRSPVPPG 272
           S    PPG
Sbjct: 236 SAGG-PPG 242



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 11/49 (22%)

Query: 288 PYEPQSPPPFSKPPQGTYGLPPASYPAS--LP---------SCAPPPPP 325
           P  P  PPP   PP G     PA  PA   LP         S +PPPPP
Sbjct: 73  PPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPP 121


>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score =  136 bits (342), Expect = 4e-32
 Identities = 102/281 (36%), Positives = 130/281 (46%), Gaps = 60/281 (21%)

Query: 81  QPPSLGEPPLHPPPP--QAAPPAPQPPQPAPQPPAPT------PAAPPPPSSASPPQNAS 132
           Q  S+ E  L PPPP  +   P+ QP     Q P         PA PPPP    PP   +
Sbjct: 33  QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPP----PPPLPA 88

Query: 133 NNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSS-----SGESCAGDKSPP- 186
             P P                  FPWMKE +   K   S++S     S    +G  SP  
Sbjct: 89  APPAPE-----------------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPAD 131

Query: 187 -------GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 239
                  G   ++R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WF
Sbjct: 132 GLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWF 191

Query: 240 QNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPF 297
           QNRRMK+K+  + +        + P   P  PGA      +  + +       SP  P  
Sbjct: 192 QNRRMKHKRQTQHR--------EPPDGEPACPGA------LEDICDPAEEPAASPGGPSA 237

Query: 298 SKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338
           S+        PP   P +L   A P P   R   AGA + G
Sbjct: 238 SRAAWEACCHPPEVVPGAL--SADPRPLAVRLEGAGASSPG 276


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score =  128 bits (322), Expect = 9e-30
 Identities = 105/324 (32%), Positives = 136/324 (41%), Gaps = 67/324 (20%)

Query: 27  NANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPP--- 83
           N  +Q Y A+       + ++  C+ Q     G  P+      ACL     PP  PP   
Sbjct: 2   NGEEQYYAAT-------QLYKDPCAFQR----GPAPEFSASPPACLYMGRQPPPPPPHPF 50

Query: 84  --SLGEPPLHPPP---PQAAPPAPQPPQPA-------PQPPAPTPAAPPPPSSASPPQNA 131
             +LG      PP   P   PP    P  A        Q   P P A P P  A P    
Sbjct: 51  PGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPG--- 107

Query: 132 SNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASS 191
                        +L  P   +  FPWMK ++ +  +           AG         +
Sbjct: 108 -------------VLEEPNRVQLPFPWMKSTKAHAWKG--------QWAGGAYAAEPEEN 146

Query: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ- 250
           KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNLTER IKIWFQNRRMK+KK++ 
Sbjct: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEED 206

Query: 251 --KGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYG-- 306
             +G G     GG +         +G  L ++          P  PP  + PP       
Sbjct: 207 KKRGGGTAVGGGGVAEPEQDCAVTSGEELLAL---------PPPPPPGGAVPPAAPVAAR 257

Query: 307 ---LPPASYPASLPSCAPPPPPQK 327
              LPP    +  PS   P  PQ+
Sbjct: 258 EGRLPPGLSASPQPSSVAPRRPQE 281



 Score = 28.9 bits (63), Expect = 9.8
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 75  LSAPPSQPPSLGEPPLHPPPPQAAPPAPQPP--QPAPQPPAPTPAAPPPP 122
           L+ PP  PP    PP     P AA     PP    +PQP +  P  P  P
Sbjct: 236 LALPPPPPPGGAVPPA---APVAAREGRLPPGLSASPQPSSVAPRRPQEP 282


>gi|4504469 homeobox B5 [Homo sapiens]
          Length = 269

 Score =  127 bits (320), Expect = 2e-29
 Identities = 99/266 (37%), Positives = 140/266 (52%), Gaps = 39/266 (14%)

Query: 5   TYYDSSAIY-GGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPK 63
           +Y D +A++ G Y Y   NG   + N+    +S+  GA GE  R   +  +P+     P+
Sbjct: 33  SYRDPAAMHTGSYGYNY-NGMDLSVNRSS-ASSSHFGAVGESSR---AFPAPAQ---EPR 84

Query: 64  AHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPS 123
             + + +C  +LS+P S P + G+   H   P A+ P+ Q    +    A         +
Sbjct: 85  FRQAASSC--SLSSPESLPCTNGDS--HGAKPSASSPSDQATSASSS--ANFTEIDEASA 138

Query: 124 SASPPQNAS--NNPTPANAAKSPLLNSPTVAK----QIFPWMKESRQNTKQKTSSSSSGE 177
           S+ P + AS  ++P+ A A   P+  S    +    QIFPWM+      K   S   +G 
Sbjct: 139 SSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMR------KLHISHDMTG- 191

Query: 178 SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 237
                  P G    KRARTAYT  Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKI
Sbjct: 192 -------PDG----KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 240

Query: 238 WFQNRRMKYKKDQKGKGMLTSSGGQS 263
           WFQNRRMK+KKD K K M  ++ G +
Sbjct: 241 WFQNRRMKWKKDNKLKSMSLATAGSA 266


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score =  127 bits (319), Expect = 2e-29
 Identities = 84/206 (40%), Positives = 104/206 (50%), Gaps = 40/206 (19%)

Query: 83  PSLGEPPLH---PPPPQAAPPAPQPPQP--------APQPPAPTPAAPPP---PSSASPP 128
           P  GE P     P P  A P      +P        AP  P P P APPP   P + +  
Sbjct: 55  PDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYS 114

Query: 129 QNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQ 188
           Q+    P    A K P +        ++PWMK+   N+     + + GE           
Sbjct: 115 QSDPKQPPSGTALKQPAV--------VYPWMKKVHVNSVNP--NYTGGEP---------- 154

Query: 189 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
              KR+RTAYT  Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KK
Sbjct: 155 ---KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211

Query: 249 DQK---GKGMLTSSGGQSPSRSPVPP 271
           D K    KG  +SS   S   S V P
Sbjct: 212 DHKLPNTKGRSSSSSSSSSCSSSVAP 237


>gi|10140847 homeobox A2 [Homo sapiens]
          Length = 376

 Score =  122 bits (306), Expect = 7e-28
 Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 31/200 (15%)

Query: 74  TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133
           T  +   +  +L    L PPP +   P+  P       P       P PS    P  +  
Sbjct: 31  TFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSH----PRHGAGGRPKPS----PAGSRG 82

Query: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQK--------TSSSSSGESCAGDK-- 183
           +P PA A + P           +PWMKE +   K           +++++G +C   K  
Sbjct: 83  SPVPAGALQPPE----------YPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES 132

Query: 184 ---SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240
              +      S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQ
Sbjct: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192

Query: 241 NRRMKYKKDQKGKGMLTSSG 260
           NRRMK+K+  + K    S G
Sbjct: 193 NRRMKHKRQTQCKENQNSEG 212


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score =  122 bits (306), Expect = 7e-28
 Identities = 92/271 (33%), Positives = 117/271 (43%), Gaps = 29/271 (10%)

Query: 15  GYPYQAANGFAYNANQQPYPASAALGAD--GEYHRPACSLQSPSSAGGHPKAHELSEACL 72
           GY    A    +   QQP    A  G +    Y+ P  + +    A     AH  ++   
Sbjct: 41  GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAY 100

Query: 73  R---TLSAPPSQPPSLGEPPLHPPPPQAA--------PPAPQPPQPAPQPPAPTPAAPPP 121
                  A P +PP   +PP     P           P  P P QP   PPA        
Sbjct: 101 PYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAA 160

Query: 122 PSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAG 181
           P++   P   S    P   A    L        ++PWMK+   +      S + GE    
Sbjct: 161 PATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKI--HVSAVNPSYNGGEP--- 215

Query: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
                     KR+RTAYT  Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQ+KIWFQN
Sbjct: 216 ----------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQN 265

Query: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
           RRMK+KKD K       S   S S S  PPG
Sbjct: 266 RRMKWKKDHKLPNTKMRS-SNSASASAGPPG 295


>gi|24497538 homeobox C4 [Homo sapiens]
          Length = 264

 Score =  116 bits (291), Expect = 4e-26
 Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 56/230 (24%)

Query: 22  NGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQ 81
           +GF ++ +Q+ YP      +  E      SLQ P ++ GH  A              P +
Sbjct: 43  SGFQHH-HQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHH--------PEK 93

Query: 82  PPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAA 141
             SL EP         AP +     P+P PPA +  AP  PSSA              A+
Sbjct: 94  SQSLCEP---------APLSGASASPSPAPPACSQPAPDHPSSA--------------AS 130

Query: 142 KSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSA 201
           K P+         ++PWMK+   +T     + + GE              KR+RTAYT  
Sbjct: 131 KQPI---------VYPWMKKIHVSTVNP--NYNGGEP-------------KRSRTAYTRQ 166

Query: 202 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
           Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216


>gi|24497540 homeobox C4 [Homo sapiens]
          Length = 264

 Score =  116 bits (291), Expect = 4e-26
 Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 56/230 (24%)

Query: 22  NGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQ 81
           +GF ++ +Q+ YP      +  E      SLQ P ++ GH  A              P +
Sbjct: 43  SGFQHH-HQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHH--------PEK 93

Query: 82  PPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAA 141
             SL EP         AP +     P+P PPA +  AP  PSSA              A+
Sbjct: 94  SQSLCEP---------APLSGASASPSPAPPACSQPAPDHPSSA--------------AS 130

Query: 142 KSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSA 201
           K P+         ++PWMK+   +T     + + GE              KR+RTAYT  
Sbjct: 131 KQPI---------VYPWMKKIHVSTVNP--NYNGGEP-------------KRSRTAYTRQ 166

Query: 202 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
           Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score =  112 bits (281), Expect = 5e-25
 Identities = 83/204 (40%), Positives = 102/204 (50%), Gaps = 56/204 (27%)

Query: 97  AAPPAPQPPQPA-----PQP-PAPTPAAPPPPSSAS--PPQNASNNPTPANA-------- 140
           AAP  P+  QPA     PQP P P  A  P P S S    +N+ +N + A+A        
Sbjct: 79  AAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHIS 138

Query: 141 -----------------------AKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE 177
                                  A+S    +P    QI+PWM+      K   S  + G 
Sbjct: 139 SREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMR------KLHISHDNIG- 191

Query: 178 SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 237
                  P G    KRARTAYT  Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKI
Sbjct: 192 ------GPEG----KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 241

Query: 238 WFQNRRMKYKKDQKGKGMLTSSGG 261
           WFQNRRMK+KKD K K M  ++ G
Sbjct: 242 WFQNRRMKWKKDNKLKSMSMAAAG 265


>gi|11321638 homeobox C5 [Homo sapiens]
          Length = 222

 Score =  107 bits (266), Expect = 3e-23
 Identities = 84/224 (37%), Positives = 104/224 (46%), Gaps = 41/224 (18%)

Query: 48  PACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQP 107
           PA ++Q+  + G   +  + S  C   L    + PP      LH     AA P   P +P
Sbjct: 17  PAYNMQTCGNYGSASEV-QASRYCYGGLDLSITFPPPAPSNSLHGVD-MAANPRAHPDRP 74

Query: 108 APQPPAPTPAAPPPPSSA--SPPQNASNNPTPA--NAAKSPL--------------LNSP 149
           A    A    AP    +A  +P   +     PA    AKS                L+ P
Sbjct: 75  ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQP 134

Query: 150 TVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKE 209
               QI+PWM      TK   S  + G               KR+RT+YT  Q +ELEKE
Sbjct: 135 PAPPQIYPWM------TKLHMSHETDG---------------KRSRTSYTRYQTLELEKE 173

Query: 210 FHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
           FHFNRYL R RR+E+AN L L ERQIKIWFQNRRMK+KKD K K
Sbjct: 174 FHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMK 217


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score =  106 bits (264), Expect = 5e-23
 Identities = 108/383 (28%), Positives = 156/383 (40%), Gaps = 73/383 (19%)

Query: 35  ASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLG-EPP---- 89
           +SA+ G+ G  +     L    +A    +A     + + T+   PS P S+  EPP    
Sbjct: 18  SSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAPSSPISVTMEPPEPHL 77

Query: 90  ----------LH----PPPPQAAPPAPQPPQPAPQPPAPTPAAPPPP-----SSASPPQN 130
                     LH    PPPP AAP     P P  Q P P    PPPP     S+AS P+ 
Sbjct: 78  VADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRT 137

Query: 131 ASNN-----------PTPANAAKSPLLNSP---------TVAKQIFPWMKESRQNTK-QK 169
           ++++           P  A A  S  ++SP          V +   P +++    TK  K
Sbjct: 138 STSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDK 197

Query: 170 TSSSSSGESCAGDK------------SPPGQASSKR-ARTAYTSAQLVELEKEFHFNRYL 216
              S S   C G K            SPP +A   R ARTA++  QL +LE+ F   +YL
Sbjct: 198 REDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYL 257

Query: 217 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGY 276
               R+++A  LNLT+ Q+K W+QNRR K+K+       L +  G   +   + P    Y
Sbjct: 258 SVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY 317

Query: 277 LNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGA 336
             S+   ++S      +   +S      Y  PPA +P       P      R    G G 
Sbjct: 318 HPSLLGSMDSTTAAAAAAAMYS----SMYRTPPAPHPQLQRPLVP------RVLIHGLGP 367

Query: 337 GGTPDYDPHAHGLQGNGSYGTPH 359
           GG P  +P +  +      GTPH
Sbjct: 368 GGQPALNPLSSPIP-----GTPH 385


>gi|15029506 homeobox D8 [Homo sapiens]
          Length = 290

 Score =  105 bits (262), Expect = 8e-23
 Identities = 88/261 (33%), Positives = 115/261 (44%), Gaps = 27/261 (10%)

Query: 7   YDSSAIYGGYPYQAANGFAYNANQQP--YPASAALGADGEYHRPACSLQS-PSSAGGHPK 63
           Y  + +Y  Y   AA   A      P  Y    A    G +   A +LQ   +SA G P 
Sbjct: 4   YFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPH 63

Query: 64  AHELSEACLRTLSAPPSQPPS---------LGEPPLHPP--PPQAAPPAPQPPQPAPQPP 112
           A   + A        PS PPS          G+   HP    P AA  A  PP P P PP
Sbjct: 64  APPQAHA-----HPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPP 118

Query: 113 APTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQI-FPWMKESRQNTKQKT- 170
            P    PPP    +     +      N  + P+  +   A+ + +P  K S  N  +   
Sbjct: 119 PP----PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPD 174

Query: 171 --SSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 228
             + SSS         P      +R R  Y+  Q +ELEKEF FN YL R RR+E+++ L
Sbjct: 175 HLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHAL 234

Query: 229 NLTERQIKIWFQNRRMKYKKD 249
            LTERQ+KIWFQNRRMK+KK+
Sbjct: 235 ALTERQVKIWFQNRRMKWKKE 255



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 28/107 (26%)

Query: 276 YLNSMHSLVNSVPYEPQSPPPFSKPPQGTY----------------GLPPASYPASLPSC 319
           Y NS     ++ P     P P S PP GT                 G P A+Y A+ P  
Sbjct: 54  YGNSAAGFPHAPPQAHAHPHP-SPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPP 112

Query: 320 APPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVF 366
             PPPP       G    G P              YG  ++Q  P+F
Sbjct: 113 PHPPPPPPPPPCGGIACHGEP-----------AKFYGYDNLQRQPIF 148


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score =  102 bits (255), Expect = 5e-22
 Identities = 85/256 (33%), Positives = 102/256 (39%), Gaps = 58/256 (22%)

Query: 74  TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133
           T +  P+QP      P  PP P      P   Q  P P   +P AP PP  A+ P  A  
Sbjct: 19  TPTCTPAQPSWARLRPTRPPEP------PSTRQRPPGPRENSPVAPGPPGGAAAPGGAGT 72

Query: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKR 193
            P     A  P                      K+  S S SG+              +R
Sbjct: 73  TPQGTATAAKP--------------------KRKRTGSDSKSGKP-------------RR 99

Query: 194 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
           ARTA+T  QLV LE +F   RYL    R+ +A  L+LTE Q+KIWFQNRR K+KK   G 
Sbjct: 100 ARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGA 159

Query: 254 GMLTSSGGQSPSRSPVPPGAG--GYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS 311
                +GG         PG G  G L+            P SP P    P G +G  PA 
Sbjct: 160 DTSAPTGGGGGPGPGAGPGTGLPGGLS------------PLSPSPPMGAPLGMHG--PAG 205

Query: 312 YPASLPS---CAPPPP 324
           YPA  P    CA   P
Sbjct: 206 YPAHGPGGLVCAAQLP 221


>gi|24497526 homeobox B1 [Homo sapiens]
          Length = 301

 Score =  102 bits (254), Expect = 7e-22
 Identities = 69/175 (39%), Positives = 82/175 (46%), Gaps = 32/175 (18%)

Query: 98  APPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFP 157
           A P P PPQ  P     T  A   P+ A         P P+        N+PT   + F 
Sbjct: 132 AGPGPYPPQHPPYGNEQT--ASFAPAYADLLSEDKETPCPSEP------NTPTA--RTFD 181

Query: 158 WMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLC 217
           WMK  R   K                S PG  S    RT +T+ QL ELEKEFHFN+YL 
Sbjct: 182 WMKVKRNPPK------------TAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLS 229

Query: 218 RPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
           R RRVE+A  L L E Q+KIWFQNRRMK KK ++ +G +           P PPG
Sbjct: 230 RARRVEIAATLELNETQVKIWFQNRRMKQKKREREEGRV----------PPAPPG 274


>gi|13375632 homeobox D1 [Homo sapiens]
          Length = 328

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 17/161 (10%)

Query: 112 PAPTPAAPPPPSSASPPQNASNNPTPANAAKS--PLLNSPTVAKQIFPWMKESRQNTKQK 169
           P P PA     +   P    + +P P    KS  P    P  A   F WMK  R  +K+ 
Sbjct: 160 PGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPA-AFSTFEWMKVKRNASKK- 217

Query: 170 TSSSSSGESCAGDKSPPGQASSKRA-RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 228
                      G  +  G AS   A RT +++ QL ELEKEFHFN+YL R RR+E+AN L
Sbjct: 218 -----------GKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCL 266

Query: 229 NLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPV 269
           +L + Q+KIWFQNRRMK KK ++ +G+L ++   +P + P+
Sbjct: 267 HLNDTQVKIWFQNRRMKQKKRER-EGLLATAIPVAPLQLPL 306



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 94  PPQAAPPAPQPPQPAPQPPAPTPAAP 119
           P  AA P+P PP    +P  P PAAP
Sbjct: 55  PLAAARPSPSPPAAPARPSVPPPAAP 80


>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
          Length = 153

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 17/114 (14%)

Query: 154 QIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
           QI+PWM+           +S SG     D+        +R R  Y+  Q +ELEKEFHFN
Sbjct: 39  QIYPWMQRM---------NSHSGVGYGADR--------RRGRQIYSRYQTLELEKEFHFN 81

Query: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
           RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+      L+  GG + + S
Sbjct: 82  RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 135


>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
          Length = 235

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 17/114 (14%)

Query: 154 QIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
           QI+PWM+           +S SG     D+        +R R  Y+  Q +ELEKEFHFN
Sbjct: 121 QIYPWMQRM---------NSHSGVGYGADR--------RRGRQIYSRYQTLELEKEFHFN 163

Query: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
           RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+      L+  GG + + S
Sbjct: 164 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 217


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 79/233 (33%), Positives = 95/233 (40%), Gaps = 52/233 (22%)

Query: 97  AAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIF 156
           A+P A      AP P   +P AP PP  A+ P  A   P     A  P            
Sbjct: 601 ASPGATVDEAAAPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKP------------ 648

Query: 157 PWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYL 216
                     K+  S S SG+              +RARTA+T  QLV LE +F   RYL
Sbjct: 649 --------KRKRTGSDSKSGKP-------------RRARTAFTYEQLVALENKFKATRYL 687

Query: 217 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAG-- 274
               R+ +A  L+LTE Q+KIWFQNRR K+KK   G      +GG         PG G  
Sbjct: 688 SVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLP 747

Query: 275 GYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPS---CAPPPP 324
           G L+            P SP P    P G +G  PA YPA  P    CA   P
Sbjct: 748 GGLS------------PLSPSPPMGAPLGMHG--PAGYPAHGPGGLVCAAQLP 786


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score = 96.7 bits (239), Expect = 4e-20
 Identities = 96/316 (30%), Positives = 121/316 (38%), Gaps = 59/316 (18%)

Query: 13  YGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSP--SSAGGHPKAHEL--- 67
           YGGY   AA   A N +    P  +   A G   R   +  +P  ++A  +  AH L   
Sbjct: 40  YGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGG 99

Query: 68  SEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASP 127
           S A     S+P    P    P  HP  P AAP           P  P PAA       SP
Sbjct: 100 SPAAAMGYSSPADYHPH-HHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSP 158

Query: 128 PQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPG 187
                N                     +  WM++  Q      S  S  ++   DK    
Sbjct: 159 GGQRRN---------------------LCEWMRKPAQQ-----SLGSQVKTRTKDKY--- 189

Query: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247
                  R  YT  Q +ELEKEFH++RY+   R+ E+A  L L+ERQ+KIWFQNRR K +
Sbjct: 190 -------RVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKER 242

Query: 248 KDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP-PQGTYG 306
           K  K K  L     Q P + P PP                P +PQ  P  S P P     
Sbjct: 243 KINKKK--LQQQQQQQPPQPPPPP--------------PQPPQPQPGPLRSVPEPLSPVS 286

Query: 307 LPPASYPASLPSCAPP 322
              AS P S+P    P
Sbjct: 287 SLQASVPGSVPGVLGP 302



 Score = 38.5 bits (88), Expect = 0.012
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 87  EPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP 144
           + P  PPPP   PP P  PQP P    P P +P     AS P +      P     +P
Sbjct: 255 QQPPQPPPP---PPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNP 309



 Score = 36.2 bits (82), Expect = 0.061
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 94  PPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAK 153
           PPQ  PP PQPPQ     P P  + P P S  S  Q +     P     +  + +PTV +
Sbjct: 257 PPQPPPPPPQPPQ---PQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNPTVTQ 313



 Score = 31.6 bits (70), Expect = 1.5
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 103 QPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPT 150
           QPPQP P PP P    P P  S   P +  ++   +     P +  PT
Sbjct: 256 QPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPT 303


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score = 95.9 bits (237), Expect = 7e-20
 Identities = 76/208 (36%), Positives = 97/208 (46%), Gaps = 24/208 (11%)

Query: 77  APPSQPP--------SLGEPPLHPPPPQAAP-PAPQPPQPAPQPPAP-TPAAPPPPSSAS 126
           APP  PP        S  EP   PP    AP PAP+    A   P P  PAA P   +  
Sbjct: 34  APPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFG 93

Query: 127 PPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPP 186
           PP + S  P PA     P L +  +     P    +++ T  +    S     AG     
Sbjct: 94  PPPDFS--PVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRS---VAAGGGGGS 148

Query: 187 GQASSK-RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 245
           G+  +K + R  YT  Q +ELEKEFH++RY+   R+ E+A  L LTERQ+KIWFQNRR K
Sbjct: 149 GKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAK 208

Query: 246 YKKDQKGKGMLTSSGGQSPSRSPVPPGA 273
            +K  K K        Q   + P PP A
Sbjct: 209 ERKVNKKK--------QQQQQPPQPPMA 228



 Score = 28.9 bits (63), Expect = 9.8
 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 264 PSRSPVPPGAGGYLNSMHSLVNSVPYEPQS-PPPFSKPPQ---GTYGLPPASYPASLPSC 319
           P+  P PP    +  S +S V   P  P +   PF  P       YG  PA+  AS  S 
Sbjct: 33  PAPPPAPPQYPDF--SSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90

Query: 320 APPPPPQKRYTAAGAGAG 337
           A  PPP      A  G G
Sbjct: 91  AFGPPPDFSPVPAPPGPG 108


>gi|13489077 homeobox A6 [Homo sapiens]
          Length = 233

 Score = 95.5 bits (236), Expect = 9e-20
 Identities = 55/113 (48%), Positives = 68/113 (60%), Gaps = 17/113 (15%)

Query: 155 IFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNR 214
           ++PWM+  R N            SCAG       +  +R R  YT  Q +ELEKEFHFNR
Sbjct: 136 VYPWMQ--RMN------------SCAGAVYG---SHGRRGRQTYTRYQTLELEKEFHFNR 178

Query: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
           YL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ K       SG  S +++
Sbjct: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKA 231


>gi|33457326 GS homeobox 1 [Homo sapiens]
          Length = 264

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 48/91 (52%), Positives = 60/91 (65%)

Query: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
           D S     SSKR RTA+TS QL+ELE+EF  N YL R RR+E+A  LNL+E+Q+KIWFQN
Sbjct: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197

Query: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
           RR+K+KK+ KG       GG +      P G
Sbjct: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228


>gi|24497556 homeobox A7 [Homo sapiens]
          Length = 230

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 9/82 (10%)

Query: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
           KR R  YT  Q +ELEKEFHFNRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190

Query: 252 GKGMLTSSGGQSPSRSPVPPGA 273
            +G         P+ +  P GA
Sbjct: 191 DEG---------PTAAAAPEGA 203


>gi|23097236 homeobox A9 [Homo sapiens]
          Length = 272

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 88/274 (32%), Positives = 112/274 (40%), Gaps = 64/274 (23%)

Query: 37  AALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLR--TLSAPPSQPPSLGEPP----- 89
           A  GA G Y+  +  L       G   A ELS       TL  PP Q  +L E P     
Sbjct: 2   ATTGALGNYYVDSFLL-------GADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPC 54

Query: 90  ---------------LHPPPPQAAPPA------------PQPPQPAPQPPA--------P 114
                          +H     A P A            PQ P  A  P          P
Sbjct: 55  SFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEP 114

Query: 115 TPAAPPPPS-SASPPQNASNNPTPANAAKSPLLNSPTVAKQIF----PWMKESRQNTKQK 169
           TP A       +S P      P  A     P L++ T++   +    P +   +Q ++  
Sbjct: 115 TPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGA 174

Query: 170 TSSSSSGESCAGDKSP--PGQA--------SSKRARTAYTSAQLVELEKEFHFNRYLCRP 219
            S +++     GDK P  P           S+++ R  YT  Q +ELEKEF FN YL R 
Sbjct: 175 FSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRD 234

Query: 220 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
           RR E+A LLNLTERQ+KIWFQNRRMK KK  K +
Sbjct: 235 RRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.129    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,954,575
Number of Sequences: 37866
Number of extensions: 2203361
Number of successful extensions: 86638
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 1709
Number of HSP's that attempted gapping in prelim test: 17204
Number of HSP's gapped (non-prelim): 29595
length of query: 443
length of database: 18,247,518
effective HSP length: 105
effective length of query: 338
effective length of database: 14,271,588
effective search space: 4823796744
effective search space used: 4823796744
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.