Guide to the Human Genome
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Name: SGOL1 Sequence: fasta or formatted (258aa) NCBI GI: 60302879
Description:

shugoshin-like 1 isoform C1

Referenced in:

Centromere Proteins

Other entries for this name:
alt prot [292aa] shugoshin-like 1 isoform C2
alt prot [561aa] shugoshin-like 1 isoform A2
alt prot [309aa] shugoshin-like 1 isoform B2
alt prot [527aa] shugoshin-like 1 isoform A1
alt prot [275aa] shugoshin-like 1 isoform B1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         14           2
 C cysteine            2.7          7           1
 D aspartate           4.7         12           2
 E glutamate           6.6         17           2
 F phenylalanine       2.7          7           1
 G glycine             2.3          6           1
 H histidine           0.4          1           1
 I isoleucine          5.4         14           2
 K lysine             12.4         32           2
 L leucine            11.2         29           2
 M methionine          1.9          5           1
 N asparagine          5.4         14           2
 P proline             6.2         16           2
 Q glutamine           7.0         18           2
 R arginine            5.8         15           2
 S serine              8.9         23           2
 T threonine           5.0         13           1
 V valine              3.5          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   shugoshin-like 1 isoform C1 
SGOL1                 0.977   shugoshin-like 1 isoform C2 
SGOL1                 0.977   shugoshin-like 1 isoform B1 
SGOL1                 0.955   shugoshin-like 1 isoform B2 
SGOL1                 0.597   shugoshin-like 1 isoform A1 
SGOL1                 0.597   shugoshin-like 1 isoform A2 
FAM184A               0.029   hypothetical protein LOC79632 isoform 2 
FAM184A               0.029   hypothetical protein LOC79632 isoform 1 
RPGRIP1L              0.023   RPGRIP1-like isoform b 
ZFHX4                 0.019   zinc finger homeodomain 4 
ZNF800                0.019   zinc finger protein 800 
CUX1                  0.019   cut-like homeobox 1 isoform a 
GOLGA4                0.019   golgi autoantigen, golgin subfamily a, 4 
RPGRIP1L              0.019   RPGRIP1-like isoform a 
DOCK11                0.016   dedicator of cytokinesis 11 
MIA3                  0.016   melanoma inhibitory activity family, member 3 [Homo...
CIT                   0.016   citron 
PRPH                  0.016   peripherin 
PCTK1                 0.014   PCTAIRE protein kinase 1 isoform 2 
PCTK1                 0.014   PCTAIRE protein kinase 1 isoform 1 
C6orf182              0.014   hypothetical protein LOC285753 
C6orf182              0.014   hypothetical protein LOC285753 
RNF20                 0.014   ring finger protein 20 
CNTLN                 0.014   centlein isoform 1 
CNTLN                 0.014   centlein isoform 2 
RNF214                0.012   ring finger protein 214 
RNF214                0.012   ring finger protein 214 
CTNND2                0.012   catenin (cadherin-associated protein), delta 2 (neur...
FURIN                 0.010   furin preproprotein 
MYO18A                0.010   myosin 18A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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