Guide to the Human Genome
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Name: CNTLN Sequence: fasta or formatted (391aa) NCBI GI: 167555106
Description:

centlein isoform 2

Referenced in:

Centrosome

Other entries for this name:
alt prot [1406aa] centlein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         29           2
 C cysteine            1.0          4           1
 D aspartate           4.9         19           1
 E glutamate          12.0         47           3
 F phenylalanine       2.0          8           1
 G glycine             3.6         14           2
 H histidine           1.5          6           1
 I isoleucine          3.8         15           1
 K lysine             10.0         39           2
 L leucine            10.5         41           2
 M methionine          1.8          7           1
 N asparagine          3.8         15           1
 P proline             3.3         13           2
 Q glutamine           7.4         29           2
 R arginine            6.4         25           2
 S serine              7.4         29           2
 T threonine           3.8         15           1
 V valine              7.2         28           2
 W tryptophan          0.8          3           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centlein isoform 2 
CNTLN                 0.975   centlein isoform 1 
GOLGA4                0.061   golgi autoantigen, golgin subfamily a, 4 
CCDC88A               0.060   coiled-coil domain containing 88A isoform 1 
CCDC88A               0.060   coiled-coil domain containing 88A isoform 2 
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH10                 0.056   myosin, heavy polypeptide 10, non-muscle 
MYH6                  0.056   myosin heavy chain 6 
CCDC18                0.055   sarcoma antigen NY-SAR-41 
CEP110                0.053   centrosomal protein 110kDa 
LOC283767             0.053   golgi autoantigen, golgin subfamily a-like 
MYH2                  0.053   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.053   myosin, heavy chain 2, skeletal muscle, adult [Homo...
ROCK2                 0.050   Rho-associated, coiled-coil containing protein kinas...
CEP164                0.050   centrosomal protein 164kDa 
AKAP9                 0.050   A-kinase anchor protein 9 isoform 3 
ERC1                  0.049   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.049   RAB6-interacting protein 2 isoform delta 
AKAP9                 0.049   A-kinase anchor protein 9 isoform 2 
CGNL1                 0.049   cingulin-like 1 
MYH7                  0.049   myosin, heavy chain 7, cardiac muscle, beta 
MYO18A                0.049   myosin 18A isoform b 
MYO18A                0.049   myosin 18A isoform a 
CAGE1                 0.048   cancer antigen 1 
ROCK1                 0.048   Rho-associated, coiled-coil containing protein kinase...
GOLGB1                0.048   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH8                  0.048   myosin, heavy chain 8, skeletal muscle, perinatal [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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