Guide to the Human Genome
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Name: C6orf182 Sequence: fasta or formatted (460aa) NCBI GI: 134133246
Description:

hypothetical protein LOC285753

Not currently referenced in the text

Other entries for this name:
alt mRNA {460aa} hypothetical protein LOC285753
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         18           2
 C cysteine            2.8         13           1
 D aspartate           4.1         19           2
 E glutamate          10.7         49           3
 F phenylalanine       2.0          9           1
 G glycine             1.3          6           1
 H histidine           3.5         16           1
 I isoleucine          5.7         26           2
 K lysine             12.4         57           3
 L leucine            10.9         50           2
 M methionine          3.5         16           1
 N asparagine          4.3         20           1
 P proline             4.1         19           2
 Q glutamine           8.3         38           2
 R arginine            4.6         21           2
 S serine              8.9         41           2
 T threonine           4.3         20           3
 V valine              3.0         14           1
 W tryptophan          0.7          3           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC285753 
C6orf182              1.000   hypothetical protein LOC285753 
CEP57                 0.243   translokin 
SYCP1                 0.047   synaptonemal complex protein 1 
GOLGA4                0.041   golgi autoantigen, golgin subfamily a, 4 
MYH1                  0.039   myosin, heavy chain 1, skeletal muscle, adult [Homo...
KIF16B                0.039   kinesin-like motor protein C20orf23 
DSP                   0.038   desmoplakin isoform I 
KTN1                  0.038   kinectin 1 isoform b 
MYH2                  0.038   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.038   myosin, heavy chain 2, skeletal muscle, adult [Homo...
CENPF                 0.038   centromere protein F 
EEA1                  0.038   early endosome antigen 1, 162kD 
C14orf145             0.038   hypothetical protein LOC145508 
MYH4                  0.038   myosin, heavy polypeptide 4, skeletal muscle 
ERC1                  0.037   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.037   RAB6-interacting protein 2 isoform delta 
CCDC88A               0.037   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.037   coiled-coil domain containing 88A isoform 1 
MYH3                  0.037   myosin, heavy chain 3, skeletal muscle, embryonic [H...
LOC645202             0.036   PREDICTED: hypothetical protein LOC645202 
MYH13                 0.036   myosin, heavy polypeptide 13, skeletal muscle [Homo...
PMFBP1                0.035   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.035   polyamine modulated factor 1 binding protein 1 isof...
AKAP9                 0.035   A-kinase anchor protein 9 isoform 3 
PLEC1                 0.034   plectin 1 isoform 11 
PLEC1                 0.034   plectin 1 isoform 10 
PLEC1                 0.034   plectin 1 isoform 8 
PLEC1                 0.034   plectin 1 isoform 7 
PLEC1                 0.034   plectin 1 isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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