Guide to the Human Genome
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Name: LOC340970 Sequence: fasta or formatted (283aa) NCBI GI: 239750040
Description:

PREDICTED: similar to tripartite motif-containing 53

Not currently referenced in the text

Other entries for this name:
alt prot {283aa} PREDICTED: similar to tripartite motif-containing 53
alt mRNA {283aa} PREDICTED: similar to tripartite motif-containing 53
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         13           2
 C cysteine            4.6         13           1
 D aspartate           3.2          9           1
 E glutamate           9.9         28           3
 F phenylalanine       4.2         12           1
 G glycine             3.2          9           1
 H histidine           6.4         18           2
 I isoleucine          4.6         13           1
 K lysine              8.5         24           3
 L leucine            12.0         34           2
 M methionine          5.3         15           1
 N asparagine          3.5         10           1
 P proline             3.2          9           1
 Q glutamine           4.2         12           1
 R arginine            6.4         18           2
 S serine              5.7         16           3
 T threonine           3.5         10           2
 V valine              2.8          8           1
 W tryptophan          2.1          6           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to tripartite motif-containing 5... 
LOC340970             1.000   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.986   PREDICTED: similar to tripartite motif-containing 5...
TRIM53                0.948   tripartite motif-containing 53 
LOC642425             0.948   tripartite motif-containing 53-like 
LOC642425             0.948   PREDICTED: tripartite motif-containing 53-like [Hom...
LOC729384             0.878   hypothetical protein LOC729384 
LOC100134006          0.878   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.878   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.878   PREDICTED: similar to ring finger protein 18 
LOC399939             0.878   PREDICTED: similar to ring finger protein 18 
LOC653111             0.864   PREDICTED: similar to ring finger protein 18 
TRIM49                0.864   ring finger protein 18 
LOC283116             0.845   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.845   PREDICTED: similar to ring finger protein 18 
LOC283116             0.845   PREDICTED: similar to ring finger protein 18 
LOC283116             0.818   PREDICTED: similar to ring finger protein 18 isofor...
LOC120824             0.716   PREDICTED: similar to hCG1802386 
LOC120824             0.714   PREDICTED: similar to hCG1802386 
SPRYD5                0.712   SPRY domain containing 5 
LOC120824             0.712   PREDICTED: similar to hCG1802386 
TRIM43                0.543   tripartite motif-containing 43 
TRIM48                0.524   tripartite motif-containing 48 
LOC653192             0.520   PREDICTED: Tripartite motif-containing protein 43-li...
LOC652859             0.438   PREDICTED: similar to Tripartite motif-containing pr...
LOC642446             0.403   PREDICTED: tripartite motif-containing protein 64B-...
TRIM64                0.401   tripartite motif-containing 64 
LOC646754             0.382   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.382   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.382   PREDICTED: tripartite motif-containing protein 64C-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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