LOC120824 8308

Name: LOC120824	Sequence: fasta or formatted (452aa)		NCBI GI: 169202730
Description: PREDICTED: similar to hCG1802386		Referenced in: Tripartite Motif Family
Other entries for this name: alt prot [452aa] PREDICTED: similar to hCG1802386 alt prot [452aa] PREDICTED: similar to hCG1802386
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.0 18 2 C cysteine 5.5 25 2 D aspartate 4.6 21 1 E glutamate 7.5 34 3 F phenylalanine 5.8 26 2 G glycine 4.4 20 1 H histidine 4.0 18 1 I isoleucine 5.1 23 2 K lysine 5.1 23 2 L leucine 9.7 44 3 M methionine 3.8 17 1 N asparagine 4.6 21 2 P proline 3.5 16 2 Q glutamine 4.9 22 2 R arginine 7.3 33 2 S serine 7.1 32 2 T threonine 3.8 17 2 V valine 4.6 21 2 W tryptophan 2.2 10 1 Y tyrosine 2.4 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to hCG1802386 LOC120824 0.998 PREDICTED: similar to hCG1802386 LOC120824 0.995 PREDICTED: similar to hCG1802386 SPRYD5 0.850 SPRY domain containing 5 LOC283116 0.711 PREDICTED: similar to ring finger protein 18 isofor... LOC283116 0.711 PREDICTED: similar to ring finger protein 18 LOC283116 0.711 PREDICTED: similar to ring finger protein 18 LOC653111 0.704 PREDICTED: similar to ring finger protein 18 TRIM49 0.704 ring finger protein 18 LOC729384 0.692 hypothetical protein LOC729384 LOC100134006 0.692 PREDICTED: similar to ring finger protein 18 isofor... LOC399939 0.692 PREDICTED: similar to ring finger protein 18 LOC100131392 0.692 PREDICTED: similar to ring finger protein 18 LOC399939 0.692 PREDICTED: similar to ring finger protein 18 LOC283116 0.567 PREDICTED: similar to ring finger protein 18 isofor... TRIM43 0.445 tripartite motif-containing 43 LOC653192 0.440 PREDICTED: Tripartite motif-containing protein 43-li... LOC340970 0.438 PREDICTED: similar to tripartite motif-containing 5... LOC340970 0.438 PREDICTED: similar to tripartite motif-containing 5... TRIM53 0.437 tripartite motif-containing 53 LOC642425 0.437 tripartite motif-containing 53-like LOC642425 0.437 PREDICTED: tripartite motif-containing 53-like [Hom... LOC340970 0.436 PREDICTED: similar to tripartite motif-containing 5... TRIM64 0.374 tripartite motif-containing 64 LOC642446 0.374 PREDICTED: tripartite motif-containing protein 64B-... LOC100289112 0.355 PREDICTED: hypothetical protein XP_002343148 TRIM77 0.355 tripartite motif-containing 77 LOC646754 0.354 PREDICTED: tripartite motif-containing protein 64C-... LOC646754 0.354 PREDICTED: tripartite motif-containing protein 64C-... LOC646754 0.354 PREDICTED: tripartite motif-containing protein 64C-... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.