Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC642425 Sequence: fasta or formatted (285aa) NCBI GI: 226246589
Description:

tripartite motif-containing 53-like

Not currently referenced in the text

Other entries for this name:
alt mRNA {285aa} PREDICTED: tripartite motif-containing 53-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         13           2
 C cysteine            4.6         13           1
 D aspartate           3.5         10           1
 E glutamate           9.5         27           3
 F phenylalanine       4.2         12           1
 G glycine             3.2          9           1
 H histidine           6.0         17           2
 I isoleucine          5.6         16           1
 K lysine              7.4         21           3
 L leucine            11.6         33           2
 M methionine          4.9         14           1
 N asparagine          3.9         11           1
 P proline             3.2          9           1
 Q glutamine           5.3         15           1
 R arginine            6.7         19           2
 S serine              6.0         17           3
 T threonine           3.9         11           2
 V valine              2.1          6           1
 W tryptophan          2.1          6           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 53-like 
TRIM53                1.000   tripartite motif-containing 53 
LOC642425             1.000   PREDICTED: tripartite motif-containing 53-like [Hom...
LOC340970             0.941   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.941   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.941   PREDICTED: similar to tripartite motif-containing 5...
LOC729384             0.906   hypothetical protein LOC729384 
LOC100134006          0.906   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.906   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.906   PREDICTED: similar to ring finger protein 18 
LOC399939             0.906   PREDICTED: similar to ring finger protein 18 
LOC653111             0.884   PREDICTED: similar to ring finger protein 18 
TRIM49                0.884   ring finger protein 18 
LOC283116             0.858   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.858   PREDICTED: similar to ring finger protein 18 
LOC283116             0.858   PREDICTED: similar to ring finger protein 18 
LOC283116             0.821   PREDICTED: similar to ring finger protein 18 isofor...
SPRYD5                0.721   SPRY domain containing 5 
LOC120824             0.709   PREDICTED: similar to hCG1802386 
LOC120824             0.707   PREDICTED: similar to hCG1802386 
LOC120824             0.705   PREDICTED: similar to hCG1802386 
TRIM43                0.542   tripartite motif-containing 43 
TRIM48                0.537   tripartite motif-containing 48 
LOC653192             0.525   PREDICTED: Tripartite motif-containing protein 43-li...
LOC652859             0.442   PREDICTED: similar to Tripartite motif-containing pr...
LOC642446             0.393   PREDICTED: tripartite motif-containing protein 64B-...
TRIM64                0.393   tripartite motif-containing 64 
LOC646754             0.371   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.371   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.371   PREDICTED: tripartite motif-containing protein 64C-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press