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Search of human proteins with 6005926
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2
isoform a [Homo sapiens]
(475 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor... 961 0.0
gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo... 946 0.0
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 92 1e-18
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 89 7e-18
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 81 2e-15
gi|28467003 kinase interacting stathmin [Homo sapiens] 79 9e-15
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 74 2e-13
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 73 6e-13
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 72 1e-12
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 71 2e-12
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 71 2e-12
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 65 2e-10
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 65 2e-10
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 64 3e-10
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 63 5e-10
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 62 9e-10
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 62 9e-10
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 62 9e-10
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 62 9e-10
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 62 9e-10
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 62 9e-10
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 61 3e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 59 1e-08
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 59 1e-08
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 59 1e-08
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 58 2e-08
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 57 4e-08
gi|41393554 LUC7-like isoform b [Homo sapiens] 56 8e-08
gi|8922297 LUC7-like isoform a [Homo sapiens] 56 8e-08
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 55 1e-07
>gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform a
[Homo sapiens]
Length = 475
Score = 961 bits (2483), Expect = 0.0
Identities = 475/475 (100%), Positives = 475/475 (100%)
Query: 1 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR 60
MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR
Sbjct: 1 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR 60
Query: 61 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA 120
RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA
Sbjct: 61 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA 120
Query: 121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ 180
LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ
Sbjct: 121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ 180
Query: 181 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE 240
APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE
Sbjct: 181 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE 240
Query: 241 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 300
NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK
Sbjct: 241 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 300
Query: 301 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQV 360
GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQV
Sbjct: 301 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQV 360
Query: 361 PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP 420
PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP
Sbjct: 361 PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP 420
Query: 421 VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW 475
VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW
Sbjct: 421 VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW 475
>gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform
b [Homo sapiens]
Length = 471
Score = 946 bits (2446), Expect = 0.0
Identities = 471/475 (99%), Positives = 471/475 (99%), Gaps = 4/475 (0%)
Query: 1 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR 60
MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR
Sbjct: 1 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR 60
Query: 61 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA 120
RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA
Sbjct: 61 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA 120
Query: 121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ 180
LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ
Sbjct: 121 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ 180
Query: 181 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE 240
APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE
Sbjct: 181 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE 240
Query: 241 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 300
NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK
Sbjct: 241 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 300
Query: 301 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQV 360
GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATL STINQTPVTLQV
Sbjct: 301 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATL----STINQTPVTLQV 356
Query: 361 PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP 420
PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP
Sbjct: 357 PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP 416
Query: 421 VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW 475
VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW
Sbjct: 417 VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW 471
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 91.7 bits (226), Expect = 1e-18
Identities = 108/516 (20%), Positives = 194/516 (37%), Gaps = 94/516 (18%)
Query: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR---RSKPLTRG 68
+E + ++ K+++ R RSH R RS+ ++R+ RSRDR + +S R R R R + +R
Sbjct: 28 HEERSKKRKKSKSRSRSHERKRSKSKERK-RSRDRERKKSKSRERKRSRSKERRRSRSRS 86
Query: 69 AKEEHGGLIRSPRHEKK--KKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMT 126
G RSP K +R +P + K+ + P + +T
Sbjct: 87 RDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLT 146
Query: 127 PDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV 186
P+ R AR ++ + I + +FF+ ++ +
Sbjct: 147 PE----------------ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDR-- 188
Query: 187 LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH-DYQPLPGMSENPSVY 245
+ K A++EF V A+ G G + ++ + M+ N
Sbjct: 189 ---NSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 245
Query: 246 VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
G + +L++G L + +D ++ + FG +++ L+ DS TG SKGY F
Sbjct: 246 SAGPM---------RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRAS--VGAKNATLVSPPSTINQTPVT------ 357
+ D +A+ LNG +L + + V + A +A+ + +T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 358 ------------LQVPGLMSSQVQMGGH-------------------------------P 374
LQ+P +QM G
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLA 416
Query: 375 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFV 434
T+ L NM P+ + EI +DV +EC+K+G V I + + G ++V
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN------SAQGNVYV 470
Query: 435 EFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYH 470
+ S+ A+ L GR FA +++ Y +YH
Sbjct: 471 KCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYH 506
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 89.4 bits (220), Expect = 7e-18
Identities = 108/522 (20%), Positives = 194/522 (37%), Gaps = 100/522 (19%)
Query: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR---RSKPLTRG 68
+E + ++ K+++ R RSH R RS+ ++R+ RSRDR + +S R R R R + +R
Sbjct: 28 HEERSKKRKKSKSRSRSHERKRSKSKERK-RSRDRERKKSKSRERKRSRSKERRRSRSRS 86
Query: 69 AKEEHGGLIRSPRHEKK--KKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMT 126
G RSP K +R +P + K+ + P + +T
Sbjct: 87 RDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLT 146
Query: 127 PDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV 186
P+ R AR ++ + I + +FF+ ++ +
Sbjct: 147 PE----------------ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDR-- 188
Query: 187 LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH-DYQPLPGMSENPSVY 245
+ K A++EF V A+ G G + ++ + M+ N
Sbjct: 189 ---NSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 245
Query: 246 VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
G + +L++G L + +D ++ + FG +++ L+ DS TG SKGY F
Sbjct: 246 SAGPM---------RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRAS--VGAKNATLVSPPSTINQTPVT------ 357
+ D +A+ LNG +L + + V + A +A+ + +T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 358 ------------LQVPGLMSSQVQMGGH-------------------------------- 373
LQ+P +QM G
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAA 416
Query: 374 -----PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPG 428
T+ L NM P+ + EI +DV +EC+K+G V I + +
Sbjct: 417 SVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN------SA 470
Query: 429 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYH 470
G ++V+ S+ A+ L GR FA +++ Y +YH
Sbjct: 471 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYH 512
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 81.3 bits (199), Expect = 2e-15
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 50/337 (14%)
Query: 21 ENRHRKRSHSRSRSRDRKRRSRSRDR-RNRDQRSASRDRRRRSKPLTRGAKEEHGGLIRS 79
E +KRS S ++SRDRKR SRSRDR R R + S SR R+ + +R HG RS
Sbjct: 57 ETSKKKRSRSHNKSRDRKR-SRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRS 115
Query: 80 PRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPV 139
H ++ +V ++ PP T +Y ++ P +P PV
Sbjct: 116 RDHRREDRV--HYRSPPLA----TGYRYGHSKS--------------PHFREKSPVREPV 155
Query: 140 VG-SQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN-- 196
S R AR ++ + I + DFF+A + V V+I D+N
Sbjct: 156 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGK-----------VRDVRIISDRNSR 204
Query: 197 ----FAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH-DYQPLPGMSENPSVYVPGVVS 251
A++EF + A+ G G + ++ + L M+ N G +
Sbjct: 205 RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPM- 263
Query: 252 TVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 311
+L++G L + +D ++ + FG + L+KDS TG SKGY F + D
Sbjct: 264 --------RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315
Query: 312 VTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPP 348
+A+ LNG +L + + V + T ++ P
Sbjct: 316 CARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFP 352
>gi|28467003 kinase interacting stathmin [Homo sapiens]
Length = 419
Score = 79.0 bits (193), Expect = 9e-15
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 374 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIF 433
PT VL L+N++ + L ++EEYE++VEDV++EC KYG V S+ +P+ E PG G++F
Sbjct: 319 PTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPK-----ENPGRGQVF 373
Query: 434 VEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 471
VE+ + D + A + LTGR F + VV + +Y R
Sbjct: 374 VEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKR 411
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 74.3 bits (181), Expect = 2e-13
Identities = 83/348 (23%), Positives = 135/348 (38%), Gaps = 83/348 (23%)
Query: 14 NKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR------RSKPLTR 67
+ + RD++ R+ S SRS R + RSRS DRR+ + S SRD RR RS PL
Sbjct: 59 SNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSE-SRSRDHRREDRVHYRSPPLAT 117
Query: 68 GAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTP 127
G + H +SP +K VR+ D ++P
Sbjct: 118 GYRYGHS---KSPHFREKSPVREPVD------------------------------NLSP 144
Query: 128 DGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL 187
+ R AR ++ + I + DFF+A + V
Sbjct: 145 E----------------ERDARTVFCMQLAARIRPRDLEDFFSAVGK-----------VR 177
Query: 188 AVQINQDKN------FAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH-DYQPLPGMSE 240
V+I D+N A++EF + A+ G G + ++ + L M+
Sbjct: 178 DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMAN 237
Query: 241 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 300
N G + +L++G L + +D ++ + FG + L+KDS TG SK
Sbjct: 238 NLQKGNGGPM---------RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK 288
Query: 301 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPP 348
GY F + D +A+ LNG +L + + V + T ++ P
Sbjct: 289 GYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFP 336
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 72.8 bits (177), Expect = 6e-13
Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 51/277 (18%)
Query: 98 GFEHITPMQYKAMQAAGQ------IPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRL 151
G +TP Q +A+Q A + I + + T+ +T + + R+
Sbjct: 55 GLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRV 114
Query: 152 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSV 205
YVG+I + + E+ + F AP P+ ++ ++ D K FAF+E+
Sbjct: 115 YVGSIYYELGEDTIRQAF-----------APFGPIKSIDMSWDSVTMKHKGFAFVEYEVP 163
Query: 206 DETTQAMA-FDGIIFQGQSLKIRRPHDY---QPL-PGMSENPSVYVPGVVSTVVPDSAHK 260
+ A+ + ++ G+++K+ RP + QP+ ++E + ++
Sbjct: 164 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF-------------NR 210
Query: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
+++ + L+DD +K + +FG +K+ L +D TG KGY F EY + A++ +
Sbjct: 211 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 270
Query: 321 NGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVT 357
N LG + L V +A V+PP + TP T
Sbjct: 271 NLFDLGGQYLRVGKA---------VTPPMPL-LTPAT 297
Score = 57.8 bits (138), Expect = 2e-08
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 33/187 (17%)
Query: 315 QAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVT----------LQVPGLM 364
QA + G+ + V SVG N L SPP+ P + P ++
Sbjct: 358 QAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEML 417
Query: 365 SSQVQMG----------------GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK 408
S Q M + V+ L NMV P+++ DD E E V +EC K
Sbjct: 418 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGE-----VTEECGK 472
Query: 409 YGLVKSIEIPRPVDGVEVPG--CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 466
+G V + I + G E KIFVEF+ + KA+Q L GR FA R VV + D
Sbjct: 473 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 532
Query: 467 DSYHRRD 473
+ + D
Sbjct: 533 ERFDNSD 539
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 72.0 bits (175), Expect = 1e-12
Identities = 82/358 (22%), Positives = 147/358 (41%), Gaps = 35/358 (9%)
Query: 10 QLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGA 69
Q E + R E R + + + + ++ R +R R ++ A + +++ P RGA
Sbjct: 567 QKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQR-KRARAEKKALKKKKKIRGPEKRGA 625
Query: 70 KEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLP-TMTPD 128
E+ E+ K R+ + P E T A AG+ A + P + +
Sbjct: 626 DEDDEKEWGDDEEEQPSKRRRVENSIPAAGE--TQNVEVAAGPAGKCAAVDVEPPSKQKE 683
Query: 129 GLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA 188
A +P V ++ + ++V N+P+ + E +L L +A G V
Sbjct: 684 KAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEP--------DTKLRPLFEACGEVVQI 735
Query: 189 VQINQDKN----FAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV 244
I ++ + ++EF+ QA+ D +G RP P S+NP
Sbjct: 736 RPIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEG------RPMFVSPCVDKSKNPDF 789
Query: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304
V +++ HKLFI GLP ++++E+ + G +K LV + A G KG A+
Sbjct: 790 KVFRYSTSL---EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAY 845
Query: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPG 362
EY + + QA+ ++GM + + + K A P + + P T + PG
Sbjct: 846 VEYENESQASQAVMKMDGMTIKENII---------KVAISNPPQRKVPEKPETRKAPG 894
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 70.9 bits (172), Expect = 2e-12
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 45/219 (20%)
Query: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFR 203
R+YVG+I + + E+ + F AP P+ ++ ++ D K FAF+E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAF-----------APFGPIKSIDMSWDSVTMKHKGFAFVEYE 135
Query: 204 SVDETTQAMA-FDGIIFQGQSLKIRRPHDY---QPL-PGMSENPSVYVPGVVSTVVPDSA 258
+ A+ + ++ G+++K+ RP + QP+ ++E +
Sbjct: 136 VPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF------------- 182
Query: 259 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 318
+++++ + L+DD +K + +FG +K+ L +D TG KGY F EY + A++
Sbjct: 183 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 242
Query: 319 GLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVT 357
+N LG + L V +A V+PP + TP T
Sbjct: 243 SMNLFDLGGQYLRVGKA---------VTPPMPL-LTPAT 271
Score = 57.8 bits (138), Expect = 2e-08
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 33/187 (17%)
Query: 315 QAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVT----------LQVPGLM 364
QA + G+ + V SVG N L SPP+ P + P ++
Sbjct: 332 QAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEML 391
Query: 365 SSQVQMG----------------GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK 408
S Q M + V+ L NMV P+++ DD E E V +EC K
Sbjct: 392 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGE-----VTEECGK 446
Query: 409 YGLVKSIEIPRPVDGVEVPG--CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 466
+G V + I + G E KIFVEF+ + KA+Q L GR FA R VV + D
Sbjct: 447 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 506
Query: 467 DSYHRRD 473
+ + D
Sbjct: 507 ERFDNSD 513
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 70.9 bits (172), Expect = 2e-12
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 45/219 (20%)
Query: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFR 203
R+YVG+I + + E+ + F AP P+ ++ ++ D K FAF+E+
Sbjct: 130 RVYVGSIYYELGEDTIRQAF-----------APFGPIKSIDMSWDSVTMKHKGFAFVEYE 178
Query: 204 SVDETTQAMA-FDGIIFQGQSLKIRRPHDY---QPL-PGMSENPSVYVPGVVSTVVPDSA 258
+ A+ + ++ G+++K+ RP + QP+ ++E +
Sbjct: 179 VPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF------------- 225
Query: 259 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 318
+++++ + L+DD +K + +FG +K+ L +D TG KGY F EY + A++
Sbjct: 226 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 285
Query: 319 GLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVT 357
+N LG + L V +A V+PP + TP T
Sbjct: 286 SMNLFDLGGQYLRVGKA---------VTPPMPL-LTPAT 314
Score = 57.8 bits (138), Expect = 2e-08
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 33/187 (17%)
Query: 315 QAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVT----------LQVPGLM 364
QA + G+ + V SVG N L SPP+ P + P ++
Sbjct: 375 QAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEML 434
Query: 365 SSQVQMG----------------GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK 408
S Q M + V+ L NMV P+++ DD E E V +EC K
Sbjct: 435 SEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGE-----VTEECGK 489
Query: 409 YGLVKSIEIPRPVDGVEVPG--CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 466
+G V + I + G E KIFVEF+ + KA+Q L GR FA R VV + D
Sbjct: 490 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 549
Query: 467 DSYHRRD 473
+ + D
Sbjct: 550 ERFDNSD 556
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 64.7 bits (156), Expect = 2e-10
Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 43/198 (21%)
Query: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
DS L + LP + D+ K L S G +++ LV+D TG S GY F Y D N D+
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 316 AIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPT 375
AI LNG++L K + V A PS+ + L V GL + Q
Sbjct: 96 AINTLNGLKLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMSQ------ 138
Query: 376 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 435
+E E++ S+YG + + I VD V G F+
Sbjct: 139 -----------------KEMEQLF-------SQYGRIITSRIL--VDQVTGVSRGVGFIR 172
Query: 436 FTSVFDCQKAMQGLTGRK 453
F + ++A++GL G+K
Sbjct: 173 FDKRIEAEEAIKGLNGQK 190
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 250 VSTVVPDSAH----KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
VS P SA L++ GLP ++ ++++L + +G + ++ D TG+S+G F
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 306 EYVDINVTDQAIAGLNGMQ 324
+ ++AI GLNG +
Sbjct: 172 RFDKRIEAEEAIKGLNGQK 190
Score = 38.5 bits (88), Expect = 0.013
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
+F+ L ++ + +L FG + +++D T KG+ F + + AIA L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 321 NGMQLGDKKLLV 332
NG +LG++ L V
Sbjct: 346 NGYRLGERVLQV 357
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 64.7 bits (156), Expect = 2e-10
Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 43/198 (21%)
Query: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
DS L + LP + D+ K L S G +++ LV+D TG S GY F Y D N D+
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 316 AIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPT 375
AI LNG++L K + V A PS+ + L V GL + Q
Sbjct: 96 AINTLNGLKLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMSQ------ 138
Query: 376 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 435
+E E++ S+YG + + I VD V G F+
Sbjct: 139 -----------------KEMEQLF-------SQYGRIITSRIL--VDQVTGVSRGVGFIR 172
Query: 436 FTSVFDCQKAMQGLTGRK 453
F + ++A++GL G+K
Sbjct: 173 FDKRIEAEEAIKGLNGQK 190
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 250 VSTVVPDSAH----KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
VS P SA L++ GLP ++ ++++L + +G + ++ D TG+S+G F
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171
Query: 306 EYVDINVTDQAIAGLNGMQ 324
+ ++AI GLNG +
Sbjct: 172 RFDKRIEAEEAIKGLNGQK 190
Score = 38.5 bits (88), Expect = 0.013
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
+F+ L ++ + +L FG + +++D T KG+ F + + AIA L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 321 NGMQLGDKKLLV 332
NG +LG++ L V
Sbjct: 339 NGYRLGERVLQV 350
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 63.9 bits (154), Expect = 3e-10
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 254 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
V S +F+G +P ++Q+K++ + GP+ +F LV D TG KGY FCEY D
Sbjct: 11 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 314 DQAIAGLNGMQLGDKKLLVQRAS 336
A+ LNG + + L V A+
Sbjct: 71 LSAMRNLNGREFSGRALRVDNAA 93
Score = 36.2 bits (82), Expect = 0.067
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAF 199
R R ++VGNIP+ TEE + D F+ PV++ ++ D K + F
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYDRETGKPKGYGF 61
Query: 200 LEFRSVDETTQAMA-FDGIIFQGQSLKI 226
E++ + AM +G F G++L++
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 63.2 bits (152), Expect = 5e-10
Identities = 77/326 (23%), Positives = 121/326 (37%), Gaps = 74/326 (22%)
Query: 30 SRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVR 89
+RSR RDR RR SR R S R R RS+ R HG RS H ++ +V
Sbjct: 60 NRSRDRDRYRRRNSRSR------SPGRQCRHRSRSWDR----RHGSESRSRDHRREDRVH 109
Query: 90 KYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQAR 149
Y++ A P L P R AR
Sbjct: 110 -----------------YRSPPLATGEPVDNLSPE--------------------ERDAR 132
Query: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN------FAFLEFR 203
++ + I + DFF+A + V V+I D+N A++EF
Sbjct: 133 TVFCMQLAARIRPRDLEDFFSAVGK-----------VRDVRIISDRNSRRSKGIAYVEFC 181
Query: 204 SVDETTQAMAFDGIIFQGQSLKIRRPH-DYQPLPGMSENPSVYVPGVVSTVVPDSAHKLF 262
+ A+ G G + ++ + L M+ N G + +L+
Sbjct: 182 EIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPM---------RLY 232
Query: 263 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
+G L + +D ++ + FG + L+KDS TG SKGY F + D +A+ LNG
Sbjct: 233 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 292
Query: 323 MQLGDKKLLVQRASVGAKNATLVSPP 348
+L + + V + T ++ P
Sbjct: 293 FELAGRPMRVGHVTERLDGGTDITFP 318
Score = 41.6 bits (96), Expect = 0.002
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 14 NKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR------RSKPLTR 67
+ + RD++ R+ S SRS R + RSRS DRR+ + S SRD RR RS PL
Sbjct: 59 SNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSE-SRSRDHRREDRVHYRSPPLAT 117
Query: 68 G 68
G
Sbjct: 118 G 118
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 62.4 bits (150), Expect = 9e-10
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 43/215 (20%)
Query: 239 SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
S N + P DS L + LP + ++ + L S G +++ LV+D TG
Sbjct: 26 SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 85
Query: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTL 358
S GY F Y+D ++AI LNG++L K + V A PS+ + L
Sbjct: 86 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANL 134
Query: 359 QVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIP 418
V GL + Q +E E++ S+YG + + I
Sbjct: 135 YVSGLPKTMTQ-----------------------KELEQLF-------SQYGRIITSRI- 163
Query: 419 RPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 453
VD V G F+ F + ++A++GL G+K
Sbjct: 164 -LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 235 LPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 294
+ GM+ + +PG T +F+ L ++ + +L FG + +++D
Sbjct: 278 IDGMTSLVGMNIPGHTGT-----GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 332
Query: 295 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332
T KG+ F + + AIA LNG +LGD+ L V
Sbjct: 333 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 370
Score = 29.6 bits (65), Expect = 6.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 400 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 459
E+ R G ++S ++ R D + G FV + D +KA+ L G + + +
Sbjct: 60 EEFRSLFGSIGEIESCKLVR--DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 117
Query: 460 VTKYCDPDSYHRRD 473
Y P S RD
Sbjct: 118 KVSYARPSSASIRD 131
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 62.4 bits (150), Expect = 9e-10
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 43/215 (20%)
Query: 239 SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
S N + P DS L + LP + ++ + L S G +++ LV+D TG
Sbjct: 29 SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 88
Query: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTL 358
S GY F Y+D ++AI LNG++L K + V A PS+ + L
Sbjct: 89 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANL 137
Query: 359 QVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIP 418
V GL + Q +E E++ S+YG + + I
Sbjct: 138 YVSGLPKTMTQ-----------------------KELEQLF-------SQYGRIITSRI- 166
Query: 419 RPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 453
VD V G F+ F + ++A++GL G+K
Sbjct: 167 -LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 200
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 235 LPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 294
+ GM+ + +PG T +F+ L ++ + +L FG + +++D
Sbjct: 267 IDGMTSLVGMNIPGHTGT-----GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 321
Query: 295 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332
T KG+ F + + AIA LNG +LGD+ L V
Sbjct: 322 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 359
Score = 29.6 bits (65), Expect = 6.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 400 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 459
E+ R G ++S ++ R D + G FV + D +KA+ L G + + +
Sbjct: 63 EEFRSLFGSIGEIESCKLVR--DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 120
Query: 460 VTKYCDPDSYHRRD 473
Y P S RD
Sbjct: 121 KVSYARPSSASIRD 134
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 62.4 bits (150), Expect = 9e-10
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 43/215 (20%)
Query: 239 SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
S N + P DS L + LP + ++ + L S G +++ LV+D TG
Sbjct: 26 SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 85
Query: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTL 358
S GY F Y+D ++AI LNG++L K + V A PS+ + L
Sbjct: 86 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANL 134
Query: 359 QVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIP 418
V GL + Q +E E++ S+YG + + I
Sbjct: 135 YVSGLPKTMTQ-----------------------KELEQLF-------SQYGRIITSRI- 163
Query: 419 RPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 453
VD V G F+ F + ++A++GL G+K
Sbjct: 164 -LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 235 LPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 294
+ GM+ + +PG T +F+ L ++ + +L FG + +++D
Sbjct: 264 IDGMTSLVGMNIPGHTGT-----GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 318
Query: 295 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332
T KG+ F + + AIA LNG +LGD+ L V
Sbjct: 319 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 356
Score = 29.6 bits (65), Expect = 6.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 400 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 459
E+ R G ++S ++ R D + G FV + D +KA+ L G + + +
Sbjct: 60 EEFRSLFGSIGEIESCKLVR--DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 117
Query: 460 VTKYCDPDSYHRRD 473
Y P S RD
Sbjct: 118 KVSYARPSSASIRD 131
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 62.4 bits (150), Expect = 9e-10
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 43/215 (20%)
Query: 239 SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
S N + P DS L + LP + ++ + L S G +++ LV+D TG
Sbjct: 43 SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 102
Query: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTL 358
S GY F Y+D ++AI LNG++L K + V A PS+ + L
Sbjct: 103 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANL 151
Query: 359 QVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIP 418
V GL + Q +E E++ S+YG + + I
Sbjct: 152 YVSGLPKTMTQ-----------------------KELEQLF-------SQYGRIITSRI- 180
Query: 419 RPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 453
VD V G F+ F + ++A++GL G+K
Sbjct: 181 -LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 214
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 235 LPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 294
+ GM+ + +PG T +F+ L ++ + +L FG + +++D
Sbjct: 281 IDGMTSLVGMNIPGHTGT-----GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 335
Query: 295 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332
T KG+ F + + AIA LNG +LGD+ L V
Sbjct: 336 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 373
Score = 29.6 bits (65), Expect = 6.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 400 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 459
E+ R G ++S ++ R D + G FV + D +KA+ L G + + +
Sbjct: 77 EEFRSLFGSIGEIESCKLVR--DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 134
Query: 460 VTKYCDPDSYHRRD 473
Y P S RD
Sbjct: 135 KVSYARPSSASIRD 148
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 62.4 bits (150), Expect = 9e-10
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 43/215 (20%)
Query: 239 SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
S N + P DS L + LP + ++ + L S G +++ LV+D TG
Sbjct: 26 SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 85
Query: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTL 358
S GY F Y+D ++AI LNG++L K + V A PS+ + L
Sbjct: 86 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANL 134
Query: 359 QVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIP 418
V GL + Q +E E++ S+YG + + I
Sbjct: 135 YVSGLPKTMTQ-----------------------KELEQLF-------SQYGRIITSRI- 163
Query: 419 RPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 453
VD V G F+ F + ++A++GL G+K
Sbjct: 164 -LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 235 LPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 294
+ GM+ + +PG T +F+ L ++ + +L FG + +++D
Sbjct: 264 IDGMTSLVGMNIPGHTGT-----GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 318
Query: 295 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332
T KG+ F + + AIA LNG +LGD+ L V
Sbjct: 319 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 356
Score = 29.6 bits (65), Expect = 6.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 400 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 459
E+ R G ++S ++ R D + G FV + D +KA+ L G + + +
Sbjct: 60 EEFRSLFGSIGEIESCKLVR--DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 117
Query: 460 VTKYCDPDSYHRRD 473
Y P S RD
Sbjct: 118 KVSYARPSSASIRD 131
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 62.4 bits (150), Expect = 9e-10
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 43/198 (21%)
Query: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315
DS L + LP + +++K L S G +++ LV+D TG S GY F Y+D ++
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 316 AIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPT 375
AI LNG++L K + V A PS+ + L V GL + Q
Sbjct: 96 AINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQ------ 138
Query: 376 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 435
+E E++ S+YG + + I VD V G F+
Sbjct: 139 -----------------KELEQLF-------SQYGRIITSRI--LVDQVTGISRGVGFIR 172
Query: 436 FTSVFDCQKAMQGLTGRK 453
F + ++A++GL G+K
Sbjct: 173 FDKRIEAEEAIKGLNGQK 190
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 250 VSTVVPDSAH----KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
VS P SA L++ GLP + ++++L + +G + ++ D TG+S+G F
Sbjct: 112 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171
Query: 306 EYVDINVTDQAIAGLNGMQ-LGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLM 364
+ ++AI GLNG + G + + + + T + S + Q+P + PG +
Sbjct: 172 RFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP-NRRYPGPL 230
Query: 365 SSQVQ 369
+ Q Q
Sbjct: 231 AQQAQ 235
Score = 42.4 bits (98), Expect = 0.001
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 17/179 (9%)
Query: 154 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA 213
G P G TE + F N + N + Q+ Q N + + + Q
Sbjct: 188 GQKPPGATEPITVKFANNPSQ-------KTNQAILSQLYQSPNRRYPG--PLAQQAQRFR 238
Query: 214 FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDD 273
D ++ +K P + GM+ + +PG P + +F+ L ++
Sbjct: 239 LDNLLNMAYGVKRFSP---MTIDGMTSLAGINIPGH-----PGTGWCIFVYNLAPDADES 290
Query: 274 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332
+ ++ FG + +++D T KG+ F + + AIA LNG +LGD+ L V
Sbjct: 291 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
Score = 30.0 bits (66), Expect = 4.8
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 348 PSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS 407
P+TIN SS V G L+ LP+ + +E ++
Sbjct: 18 PTTINNN---------CSSPVDSGNTEDSKTNLIVNYLPQNMTQEE--------LKSLFG 60
Query: 408 KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPD 467
G ++S ++ R D + G FV + D +KA+ L G + + + Y P
Sbjct: 61 SIGEIESCKLVR--DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 468 SYHRRD 473
S RD
Sbjct: 119 SASIRD 124
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 60.8 bits (146), Expect = 3e-09
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316
S +F+G +P ++Q+K++ + G + +F LV D TG KGY FCEY D A
Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73
Query: 317 IAGLNGMQLGDKKLLVQRASVGAKNATLVS--PPSTINQTP 355
+ LNG + + L V A+ L S P + I +P
Sbjct: 74 MRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSP 114
Score = 37.7 bits (86), Expect = 0.023
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 144 MTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFR 203
M R R ++VGNIP+ TEE + D F+ +G + V + + K + F E++
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFS---EVGSVVSF--RLVYDRETGKPKGYGFCEYQ 65
Query: 204 SVDETTQAMA-FDGIIFQGQSLKI 226
+ AM +G F G++L++
Sbjct: 66 DQETALSAMRNLNGREFSGRALRV 89
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 58.5 bits (140), Expect = 1e-08
Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 78/318 (24%)
Query: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK------NFAFLEFRS 204
LYVG++ +TE + + F+ P PVL++++ +D +A++ F+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFS-----------PAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 205 VDETTQA---MAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKL 261
+ +A M FD + +G+ ++I +PS+ GV + +
Sbjct: 62 PADAERALDTMNFD--VIKGKPIRIM---------WSQRDPSLRKSGVGN---------V 101
Query: 262 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 321
FI L +++ + + ++FG + + +V D SKGYAF + D+AI +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMN 159
Query: 322 GMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLM 381
GM L D+K+ V R + ++G E +
Sbjct: 160 GMLLNDRKVFVGR-------------------------FKSRKEREAELGAKAKEFTNVY 194
Query: 382 NMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFD 441
EE +DDE +E+ S++G S+++ R +G + G G FV + D
Sbjct: 195 IKNFGEE-VDDESLKELF-------SQFGKTLSVKVMRDPNG-KSKGFG--FVSYEKHED 243
Query: 442 CQKAMQGLTGRKFANRVV 459
KA++ + G++ + +++
Sbjct: 244 ANKAVEEMNGKEISGKII 261
Score = 48.1 bits (113), Expect = 2e-05
Identities = 78/352 (22%), Positives = 143/352 (40%), Gaps = 69/352 (19%)
Query: 115 QIPATA--LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPF-----GITEEAMMD 167
Q PA A L TM D + P+ ++ SQ R+ VGN+ I +A+ D
Sbjct: 60 QQPADAERALDTMNFD--VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 117
Query: 168 FFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEF-------RSVDETTQAMAFDGIIFQ 220
F+A G + + N K +AF+ F +++++ + D +F
Sbjct: 118 TFSA---FGNILSCK----VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Query: 221 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 280
G+ K R+ + + E +VY+ V +D+ +KEL +
Sbjct: 171 GR-FKSRKEREAELGAKAKEFTNVYIKNFGEEV-----------------DDESLKELFS 212
Query: 281 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 340
FG + +++D G SKG+ F Y ++A+ +NG ++ K + V RA +
Sbjct: 213 QFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Query: 341 NATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVE 400
Q + + L Q ++ + L + N+ ++ +DDE+
Sbjct: 272 -----------RQAELKRKFEQL--KQERISRYQGVNLYIKNL---DDTIDDEK------ 309
Query: 401 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 452
+R E S +G + S ++ ++ G G FV F+S + KA+ + GR
Sbjct: 310 -LRKEFSPFGSITSAKV--MLEDGRSKGFG--FVCFSSPEEATKAVTEMNGR 356
Score = 34.3 bits (77), Expect = 0.25
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
L+I L + ++D+++++ + FG + + ++ + G SKG+ F + +A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 321 NGMQLGDKKLLVQRA 335
NG +G K L V A
Sbjct: 354 NGRIVGSKPLYVALA 368
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 58.5 bits (140), Expect = 1e-08
Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 78/318 (24%)
Query: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK------NFAFLEFRS 204
LYVG++ +TE + + F+ P PVL++++ +D +A++ F+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFS-----------PAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 205 VDETTQA---MAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKL 261
+ +A M FD + +G+ ++I +PS+ GV + +
Sbjct: 62 PADAERALDTMNFD--VIKGKPIRIM---------WSQRDPSLRKSGVGN---------V 101
Query: 262 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 321
FI L +++ + + ++FG + + +V D SKGYAF + D+AI +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMN 159
Query: 322 GMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLM 381
GM L D+K+ V R + ++G E +
Sbjct: 160 GMLLNDRKVFVGR-------------------------FKSRKEREAELGAKAKEFTNVY 194
Query: 382 NMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFD 441
EE +DDE +E+ S++G S+++ R +G + G G FV + D
Sbjct: 195 IKNFGEE-VDDESLKELF-------SQFGKTLSVKVMRDPNG-KSKGFG--FVSYEKHED 243
Query: 442 CQKAMQGLTGRKFANRVV 459
KA++ + G++ + +++
Sbjct: 244 ANKAVEEMNGKEISGKII 261
Score = 48.1 bits (113), Expect = 2e-05
Identities = 78/352 (22%), Positives = 143/352 (40%), Gaps = 69/352 (19%)
Query: 115 QIPATA--LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPF-----GITEEAMMD 167
Q PA A L TM D + P+ ++ SQ R+ VGN+ I +A+ D
Sbjct: 60 QQPADAERALDTMNFD--VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 117
Query: 168 FFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEF-------RSVDETTQAMAFDGIIFQ 220
F+A G + + N K +AF+ F +++++ + D +F
Sbjct: 118 TFSA---FGNILSCK----VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Query: 221 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 280
G+ K R+ + + E +VY+ V +D+ +KEL +
Sbjct: 171 GR-FKSRKEREAELGAKAKEFTNVYIKNFGEEV-----------------DDESLKELFS 212
Query: 281 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 340
FG + +++D G SKG+ F Y ++A+ +NG ++ K + V RA +
Sbjct: 213 QFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Query: 341 NATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVE 400
Q + + L Q ++ + L + N+ ++ +DDE+
Sbjct: 272 -----------RQAELKRKFEQL--KQERISRYQGVNLYIKNL---DDTIDDEK------ 309
Query: 401 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 452
+R E S +G + S ++ ++ G G FV F+S + KA+ + GR
Sbjct: 310 -LRKEFSPFGSITSAKV--MLEDGRSKGFG--FVCFSSPEEATKAVTEMNGR 356
Score = 34.3 bits (77), Expect = 0.25
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
L+I L + ++D+++++ + FG + + ++ + G SKG+ F + +A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 321 NGMQLGDKKLLVQRA 335
NG +G K L V A
Sbjct: 354 NGRIVGSKPLYVALA 368
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 58.5 bits (140), Expect = 1e-08
Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 78/318 (24%)
Query: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK------NFAFLEFRS 204
LYVG++ +TE + + F+ P PVL++++ +D +A++ F+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFS-----------PAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 205 VDETTQA---MAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKL 261
+ +A M FD + +G+ ++I +PS+ GV + +
Sbjct: 62 PADAERALDTMNFD--VIKGKPIRIM---------WSQRDPSLRKSGVGN---------V 101
Query: 262 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 321
FI L +++ + + ++FG + + +V D SKGYAF + D+AI +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMN 159
Query: 322 GMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLM 381
GM L D+K+ V R + ++G E +
Sbjct: 160 GMLLNDRKVFVGR-------------------------FKSRKEREAELGAKAKEFTNVY 194
Query: 382 NMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFD 441
EE +DDE +E+ S++G S+++ R +G + G G FV + D
Sbjct: 195 IKNFGEE-VDDESLKELF-------SQFGKTLSVKVMRDPNG-KSKGFG--FVSYEKHED 243
Query: 442 CQKAMQGLTGRKFANRVV 459
KA++ + G++ + +++
Sbjct: 244 ANKAVEEMNGKEISGKII 261
Score = 48.1 bits (113), Expect = 2e-05
Identities = 78/352 (22%), Positives = 143/352 (40%), Gaps = 69/352 (19%)
Query: 115 QIPATA--LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPF-----GITEEAMMD 167
Q PA A L TM D + P+ ++ SQ R+ VGN+ I +A+ D
Sbjct: 60 QQPADAERALDTMNFD--VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 117
Query: 168 FFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEF-------RSVDETTQAMAFDGIIFQ 220
F+A G + + N K +AF+ F +++++ + D +F
Sbjct: 118 TFSA---FGNILSCK----VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Query: 221 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 280
G+ K R+ + + E +VY+ V +D+ +KEL +
Sbjct: 171 GR-FKSRKEREAELGAKAKEFTNVYIKNFGEEV-----------------DDESLKELFS 212
Query: 281 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 340
FG + +++D G SKG+ F Y ++A+ +NG ++ K + V RA +
Sbjct: 213 QFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Query: 341 NATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVE 400
Q + + L Q ++ + L + N+ ++ +DDE+
Sbjct: 272 -----------RQAELKRKFEQL--KQERISRYQGVNLYIKNL---DDTIDDEK------ 309
Query: 401 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 452
+R E S +G + S ++ ++ G G FV F+S + KA+ + GR
Sbjct: 310 -LRKEFSPFGSITSAKV--MLEDGRSKGFG--FVCFSSPEEATKAVTEMNGR 356
Score = 34.3 bits (77), Expect = 0.25
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
L+I L + ++D+++++ + FG + + ++ + G SKG+ F + +A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 321 NGMQLGDKKLLVQRA 335
NG +G K L V A
Sbjct: 354 NGRIVGSKPLYVALA 368
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 57.8 bits (138), Expect = 2e-08
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
+ LYVGN+ +TE ++ F+ ++G N + + + + F+EF
Sbjct: 7 KTLYVGNLSRDVTEALILQLFS---QIGPCK----NCKMIMDTAGNDPYCFVEFHEHRHA 59
Query: 209 TQAMA-FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLP 267
A+A +G G+ +K+ ++ P S+ VVST +F+G L
Sbjct: 60 AAALAAMNGRKIMGKEVKV----NWATTPS-SQKKDTSSSTVVSTQRSQDHFHVFVGDLS 114
Query: 268 NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 327
+ + +K FG + +VKD ATG SKGY F + + + AI + G LG
Sbjct: 115 PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 174
Query: 328 KKL 330
+++
Sbjct: 175 RQI 177
Score = 40.4 bits (93), Expect = 0.004
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 30/203 (14%)
Query: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
L++G L + + + +L + GP K ++ D+A + Y F E+ + A+A +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG--NDPYCFVEFHEHRHAAAALAAM 66
Query: 321 NGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCL 380
NG ++ K++ V A+ PS+ + + V SQ
Sbjct: 67 NGRKIMGKEVKVNWATT----------PSSQKKDTSSSTVVSTQRSQDHF---------- 106
Query: 381 MNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF 440
+ D E ED++ + +G + + + + + G G FV F + +
Sbjct: 107 ------HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG--FVSFFNKW 158
Query: 441 DCQKAMQGLTGRKFANRVVVTKY 463
D + A+Q + G+ R + T +
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNW 181
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
+Y G + G+TE+ M F +P ++ +++ DK ++F+ F S +
Sbjct: 216 VYCGGVTSGLTEQLMRQTF-----------SPFGQIMEIRVFPDKGYSFVRFNSHESAAH 264
Query: 211 A-MAFDGIIFQGQSLK 225
A ++ +G +G +K
Sbjct: 265 AIVSVNGTTIEGHVVK 280
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 57.0 bits (136), Expect = 4e-08
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 13 ENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGAKEE 72
E ++ER++ENR R+R R R R+R+RR R R+R +R R RR+ R ++E
Sbjct: 403 ERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEEWERERAKRDE 462
Query: 73 ----HGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKA 109
H R EK+K K PP + P + A
Sbjct: 463 KDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAA 503
Score = 33.9 bits (76), Expect = 0.33
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR-----RNRDQRSASRDR-RRRSKPL 65
N Q + E H R R R R+R+ R R R+R R R++R R+R R +
Sbjct: 387 NFRVQYTETEPYHNYRE--RERERERENRQRERERERERDRERERRQREREREREHERDK 444
Query: 66 TRGAKEEHGGLIRSPRHEKKKKVR 89
R ++E R+ R EK ++ R
Sbjct: 445 ERQRRKEEWERERAKRDEKDRQHR 468
>gi|41393554 LUC7-like isoform b [Homo sapiens]
Length = 371
Score = 55.8 bits (133), Expect = 8e-08
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 15 KQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGAKEEHG 74
++ER++E R +RS SR+R R RRSRSRDRR R RS SR+RR+ S+ +R H
Sbjct: 247 REEREREERLSRRSGSRTRDR---RRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHR 303
Query: 75 GLIRS 79
RS
Sbjct: 304 SRSRS 308
Score = 46.6 bits (109), Expect = 5e-05
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 5 DEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR-RNRDQRSASRDRRRRSK 63
D + + ++ R + +R SRSRSRDR RR RSR R +R R ASRDR + K
Sbjct: 266 DRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYK 325
Query: 64 -PLTRGAKEEHGGLIRSPR 81
R ++EE RS R
Sbjct: 326 FSRERASREESWESGRSER 344
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5 DEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKP 64
D+ + + E +++R+++ R+ R R+ SR+RDRR RS SRDRRRR
Sbjct: 226 DQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRR----RSRSRDRRRRR-- 279
Query: 65 LTRGAKEEHGGLIRSPRHEKKKKVR 89
+R E L RS ++ ++ R
Sbjct: 280 -SRSTSRERRKLSRSRSRDRHRRHR 303
Score = 42.7 bits (99), Expect = 7e-04
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 8 ERQLNENKQERD-KENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLT 66
ER+ E R R R+RS SR R R R+ RS SR+RR + RS SRDR RR + +
Sbjct: 249 EREREERLSRRSGSRTRDRRRSRSRDRRR-RRSRSTSRERR-KLSRSRSRDRHRRHRSRS 306
Query: 67 RGAKEEH 73
R H
Sbjct: 307 RSHSRGH 313
Score = 40.4 bits (93), Expect = 0.004
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 9 RQLNENKQERDKENRHRKRSHSRSRSRDRKR----RSRSRDRRNRDQ-RSASRDRRRRSK 63
R + + R +R R+R SRS SR+R++ RSR R RR+R + RS SR RR S+
Sbjct: 259 RSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASR 318
>gi|8922297 LUC7-like isoform a [Homo sapiens]
Length = 325
Score = 55.8 bits (133), Expect = 8e-08
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 15 KQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGAKEEHG 74
++ER++E R +RS SR+R R RRSRSRDRR R RS SR+RR+ S+ +R H
Sbjct: 247 REEREREERLSRRSGSRTRDR---RRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHR 303
Query: 75 GLIRS 79
RS
Sbjct: 304 SRSRS 308
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5 DEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKP 64
D+ + + E +++R+++ R+ R R+ SR+RDRR RS SRDRRRR
Sbjct: 226 DQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRR----RSRSRDRRRRR-- 279
Query: 65 LTRGAKEEHGGLIRSPRHEKKKKVR 89
+R E L RS ++ ++ R
Sbjct: 280 -SRSTSRERRKLSRSRSRDRHRRHR 303
Score = 45.1 bits (105), Expect = 1e-04
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 5 DEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR-RNRDQRSASRDRRRRSK 63
D + + ++ R + +R SRSRSRDR RR RSR R +R R ASRDR + K
Sbjct: 266 DRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYK 325
Score = 42.7 bits (99), Expect = 7e-04
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 8 ERQLNENKQERD-KENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLT 66
ER+ E R R R+RS SR R R R+ RS SR+RR + RS SRDR RR + +
Sbjct: 249 EREREERLSRRSGSRTRDRRRSRSRDRRR-RRSRSTSRERR-KLSRSRSRDRHRRHRSRS 306
Query: 67 RGAKEEH 73
R H
Sbjct: 307 RSHSRGH 313
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 9 RQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR-RNRDQRSASRDRRRRSKPLTR 67
R + + R +R R+R SRS SR+R++ SRSR R R+R RS SR R + +R
Sbjct: 259 RSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASR 318
Score = 37.4 bits (85), Expect = 0.030
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 6 EFERQLNENKQERDKENRH---RKRSHSRSRSRDRKR----RSRSRDRRNRDQ---RSAS 55
E E +L+ R ++ R R R RSRS R+R RSRSRDR R + RS S
Sbjct: 251 EREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHS 310
Query: 56 RDRRRRSK 63
R RR S+
Sbjct: 311 RGHRRASR 318
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 55.5 bits (132), Expect = 1e-07
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 6 EFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPL 65
E ER+ + ++ + K+ R +KR R R ++R +R R R +R +++R R+R R+ +
Sbjct: 122 ERERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKK 181
Query: 66 TRGAKEEHGGLIRSPRHEKKKKVRK 90
R KE + +KKK RK
Sbjct: 182 ERERKERRERKKERKKERRKKKERK 206
Score = 49.7 bits (117), Expect = 6e-06
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 13 ENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGAKEE 72
E K+ER K+ + +++ R + R+RKR+ R + R+ R ++ +RR+R K + +++
Sbjct: 53 ERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREK----ERRKRKKEKKKRERKQ 108
Query: 73 HGGLIRSPRHEKKKKVRK 90
G R + E+K++ R+
Sbjct: 109 RGRRERKKKKERKERERE 126
Score = 49.3 bits (116), Expect = 8e-06
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 RQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRG 68
R+ + K+ER+KE R R+R + R ++ R + R+R+ +++ ++RR + + +
Sbjct: 41 REREKRKREREKE-RKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKK 99
Query: 69 AKEEHGGLIRSPRHEKKKKVRK 90
K++ R R KKKK RK
Sbjct: 100 EKKKRERKQRGRRERKKKKERK 121
Score = 48.9 bits (115), Expect = 1e-05
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 6 EFERQLNENKQE----RDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRR 61
E E+Q E +++ R KE + R+R R R +K+ + R+R N+ +R R +RR+
Sbjct: 81 EREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRK 140
Query: 62 SKPLTRGAKEEHGGLIRSPRHEKKKKVRK 90
K +E+ G R ++KK+ R+
Sbjct: 141 KKRRKERKREKERGKRERKRKKRKKEERE 169
Score = 47.4 bits (111), Expect = 3e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 8 ERQLNENKQERDKENRHRKRSHSRSRSRDRKR-----RSRSRDRRNRDQRSASRDRRRRS 62
ER+ + ++ER++EN+ R+ R R + RK+ R R ++R R+++ R + R
Sbjct: 113 ERKKKKERKERERENKQRRE---RKRKKRRKKKRRKERKREKERGKRERKRKKRKKEERE 169
Query: 63 KPLTRGAKEEHGGLIRSPRHEKKKKVRK 90
K R KE R R E+KK+ +K
Sbjct: 170 KKRERNRKERKKERERKERRERKKERKK 197
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 6 EFERQLNENKQE----------RDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSAS 55
E ER+ K+E +++E + ++R R R+++RR R ++++ R+++
Sbjct: 51 EKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKKKRERKQRG 110
Query: 56 RDRRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRK 90
R R++ K +E R + +KKK RK
Sbjct: 111 RRERKKKKERKERERENKQRRERKRKKRRKKKRRK 145
Score = 43.9 bits (102), Expect = 3e-04
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 8 ERQLNENKQ----ERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSK 63
E++ E KQ ER K+ ++R + R+RKR+ R R ++ R +R ++R +R +
Sbjct: 100 EKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKR-RKKKRRKERKREKERGKRER 158
Query: 64 PLTRGAKEEHGGLIRSPRHEKKKKVRK 90
+ KEE R + E+ +K RK
Sbjct: 159 KRKKRKKEE-----REKKRERNRKERK 180
Score = 38.5 bits (88), Expect = 0.013
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 5 DEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKP 64
+E E++ N++ER KE R+R R R ++RK+ R + R +D+++ + + +P
Sbjct: 166 EEREKKRERNRKERKKE---RERKERRERKKERKKERRKKKERKKDRKTDRQTDSQVFRP 222
Query: 65 LTRGA 69
L A
Sbjct: 223 LRESA 227
Score = 35.8 bits (81), Expect = 0.087
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 8 ERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRS 62
+R+ E +++R++ + RK+ R R+RK + R ++RR + +R R R++
Sbjct: 162 KRKKEEREKKRERNRKERKKERERKERRERK-KERKKERRKKKERKKDRKTDRQT 215
Score = 34.7 bits (78), Expect = 0.19
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 8 ERQLNENKQERD-KENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLT 66
ER E K+ER+ KE R RK+ + R RK++ R +DR+ Q + R R
Sbjct: 173 ERNRKERKKERERKERRERKKERKKER---RKKKERKKDRKTDRQTDSQVFRPLRESAFN 229
Query: 67 R 67
R
Sbjct: 230 R 230
Score = 34.3 bits (77), Expect = 0.25
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 6 EFERQLNENKQE-RDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKP 64
E ER E K++ R KE R +KR +R ++RK+ ++RR R + R+++ +
Sbjct: 150 EKERGKRERKRKKRKKEEREKKRERNR---KERKKERERKERRERKKERKKERRKKKERK 206
Query: 65 LTRGAKEEHGGLIRSPRHE 83
R + + P E
Sbjct: 207 KDRKTDRQTDSQVFRPLRE 225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,137,349
Number of Sequences: 37866
Number of extensions: 926938
Number of successful extensions: 11469
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 4788
Number of HSP's gapped (non-prelim): 3759
length of query: 475
length of database: 18,247,518
effective HSP length: 106
effective length of query: 369
effective length of database: 14,233,722
effective search space: 5252243418
effective search space used: 5252243418
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.