Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FZR1 Sequence: fasta or formatted (404aa) NCBI GI: 209969678
Description:

Fzr1 protein isoform 3

Referenced in:

Anaphase-promoting Complex
Additional Cell Cycle Functions
Spindle, M phase, and Meiosis
WD Repeat Proteins

Other entries for this name:
alt prot [496aa] Fzr1 protein isoform 1
alt prot [493aa] Fzr1 protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         29           3
 C cysteine            1.2          5           1
 D aspartate           4.7         19           1
 E glutamate           5.0         20           1
 F phenylalanine       2.0          8           1
 G glycine             7.7         31           3
 H histidine           3.2         13           1
 I isoleucine          3.5         14           1
 K lysine              5.0         20           2
 L leucine            10.1         41           2
 M methionine          1.5          6           1
 N asparagine          5.0         20           1
 P proline             4.0         16           2
 Q glutamine           5.7         23           2
 R arginine            7.2         29           2
 S serine              9.7         39           2
 T threonine           6.7         27           1
 V valine              6.4         26           1
 W tryptophan          2.7         11           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Fzr1 protein isoform 3 
FZR1                  0.677   Fzr1 protein isoform 2 
FZR1                  0.671   Fzr1 protein isoform 1 
CDC20                 0.293   cell division cycle 20 
CDC20B                0.188   CDC20 cell division cycle 20 homolog B isoform 1 [Ho...
CDC20B                0.144   CDC20 cell division cycle 20 homolog B isoform 2 [H...
NLE1                  0.075   Notchless gene homolog isoform a 
WDR38                 0.068   WD repeat domain 38 
TAF5                  0.068   TBP-associated factor 5 
WDR69                 0.065   WD repeat domain 69 
WDR5                  0.064   WD repeat domain 5 
WDR5                  0.064   WD repeat domain 5 
TAF5L                 0.064   PCAF associated factor 65 beta isoform a 
GNB4                  0.063   guanine nucleotide-binding protein, beta-4 subunit [...
TBL1XR1               0.063   transducin (beta)-like 1 X-linked receptor 1 
PAFAH1B1              0.062   platelet-activating factor acetylhydrolase, isoform I...
KATNB1                0.062   katanin p80 subunit B 1 
GNB1                  0.062   guanine nucleotide-binding protein, beta-1 subunit [...
WDR5B                 0.060   WD repeat domain 5B 
GNB3                  0.059   guanine nucleotide-binding protein, beta-3 subunit [H...
PRPF4                 0.059   PRP4 pre-mRNA processing factor 4 homolog 
TBL1X                 0.058   transducin beta-like 1X isoform b 
TBL1X                 0.058   transducin beta-like 1X isoform b 
TBL1X                 0.058   transducin beta-like 1X isoform a 
TBL1X                 0.058   transducin beta-like 1X isoform a 
NLE1                  0.058   Notchless gene homolog isoform b 
WDR51A                0.057   WD repeat domain 51A isoform 3 
WDR51A                0.057   WD repeat domain 51A isoform 2 
WDR51A                0.057   WD repeat domain 51A isoform 1 
APAF1                 0.057   apoptotic peptidase activating factor 1 isoform d [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press