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Search of human proteins with 58331163
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331163 PHD finger protein 19 isoform b [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58331163 PHD finger protein 19 isoform b [Homo sapiens] 433 e-122
gi|58331161 PHD finger protein 19 isoform a [Homo sapiens] 334 4e-92
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 133 1e-31
gi|13435397 PHD finger protein 1 isoform b [Homo sapiens] 133 1e-31
gi|6678764 metal response element binding transcription factor 2... 128 3e-30
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 44 1e-04
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 44 1e-04
gi|5454004 D4, zinc and double PHD fingers family 2 [Homo sapiens] 39 0.003
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 39 0.004
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 37 0.012
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 37 0.012
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 37 0.012
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 37 0.015
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 36 0.020
gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens] 36 0.020
gi|117190334 PHD finger protein 16 [Homo sapiens] 36 0.026
gi|7662006 PHD finger protein 16 [Homo sapiens] 36 0.026
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 36 0.026
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 36 0.026
gi|215599585 integrator complex subunit 12 [Homo sapiens] 36 0.026
gi|21361851 integrator complex subunit 12 [Homo sapiens] 36 0.026
gi|120659785 protein kinase D2 isoform A [Homo sapiens] 35 0.034
gi|120659782 protein kinase D2 isoform A [Homo sapiens] 35 0.034
gi|19923468 protein kinase D2 isoform A [Homo sapiens] 35 0.034
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens] 35 0.059
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 35 0.059
gi|40556370 PHD finger protein 15 [Homo sapiens] 35 0.059
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 34 0.100
gi|120659787 protein kinase D2 isoform B [Homo sapiens] 33 0.17
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 33 0.17
>gi|58331163 PHD finger protein 19 isoform b [Homo sapiens]
Length = 207
Score = 433 bits (1113), Expect = e-122
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MENRALDPGTRDSYGATSHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKI 60
MENRALDPGTRDSYGATSHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKI
Sbjct: 1 MENRALDPGTRDSYGATSHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKI 60
Query: 61 KRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCG 120
KRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCG
Sbjct: 61 KRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCG 120
Query: 121 LGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRVSLPSSPVPASPASSSGADQRLPSQ 180
LGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRVSLPSSPVPASPASSSGADQRLPSQ
Sbjct: 121 LGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRVSLPSSPVPASPASSSGADQRLPSQ 180
Query: 181 SLSSKQKGHTWALETDSASATVLGQDL 207
SLSSKQKGHTWALETDSASATVLGQDL
Sbjct: 181 SLSSKQKGHTWALETDSASATVLGQDL 207
>gi|58331161 PHD finger protein 19 isoform a [Homo sapiens]
Length = 580
Score = 334 bits (856), Expect = 4e-92
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MENRALDPGTRDSYGATSHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKI 60
MENRALDPGTRDSYGATSHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKI
Sbjct: 1 MENRALDPGTRDSYGATSHLPNKGALAKVKNNFKDLMSKLTEGQYVLCRWTDGLYYLGKI 60
Query: 61 KRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCG 120
KRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCG
Sbjct: 61 KRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCG 120
Query: 121 LGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
LGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR
Sbjct: 121 LGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 133 bits (334), Expect = 1e-31
Identities = 60/117 (51%), Positives = 80/117 (68%)
Query: 39 KLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 98
+L EGQ VL RWTDGL YLG IK+V S+++ CLV FED+S++ VLWKDI A +PGEE
Sbjct: 30 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELL 89
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
C +C +T P N ++ C KC YHQ CH+P A + + T W CR+C+FA+A +
Sbjct: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
>gi|13435397 PHD finger protein 1 isoform b [Homo sapiens]
Length = 567
Score = 133 bits (334), Expect = 1e-31
Identities = 60/117 (51%), Positives = 80/117 (68%)
Query: 39 KLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 98
+L EGQ VL RWTDGL YLG IK+V S+++ CLV FED+S++ VLWKDI A +PGEE
Sbjct: 30 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELL 89
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
C +C +T P N ++ C KC YHQ CH+P A + + T W CR+C+FA+A +
Sbjct: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
>gi|6678764 metal response element binding transcription factor 2
[Homo sapiens]
Length = 593
Score = 128 bits (322), Expect = 3e-30
Identities = 59/117 (50%), Positives = 73/117 (62%)
Query: 39 KLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 98
K EGQ VL RW+DGL+YLG IK+++ KQSC + FED+SK WVLWKDIQ E
Sbjct: 45 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMV 104
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
C IC + S NE++IC KCG GYHQ CH P S+ W CR+C+FA +
Sbjct: 105 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 161
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 43.9 bits (102), Expect = 1e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCH------IPIAGSADQPLLTPWFCRRC 148
C +CLG S +EI+ C CG+ H+ C+ I SA + PWFC C
Sbjct: 322 CCVCLGDNSEDADEIIQCDNCGITVHEGCYGVDGESDSIMSSASENSTEPWFCDAC 377
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 43.9 bits (102), Expect = 1e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCH------IPIAGSADQPLLTPWFCRRC 148
C +CLG S +EI+ C CG+ H+ C+ I SA + PWFC C
Sbjct: 322 CCVCLGDNSEDADEIIQCDNCGITVHEGCYGVDGESDSIMSSASENSTEPWFCDAC 377
Score = 28.9 bits (63), Expect = 3.2
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 98 KCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRVS 157
+C C G +G ++ C +C L YH C P + + W C+ C
Sbjct: 870 ECATCKG--TGDNENLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQEC--------- 918
Query: 158 LPSSPVPASPASSSGADQRLPSQSLSSKQK 187
+S + A+++ SQ L+ +QK
Sbjct: 919 ----DSSSSKEDENEAERKNISQELNMEQK 944
>gi|5454004 D4, zinc and double PHD fingers family 2 [Homo sapiens]
Length = 391
Score = 38.9 bits (89), Expect = 0.003
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRVSL 158
CNIC TS +++L C C GYH C P S +P W C C+ L + S+
Sbjct: 330 CNIC--GTSENDDQLLFCDDCDRGYHMYCLTP---SMSEPPEGSWSCHLCLDLLKEKASI 384
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 38.5 bits (88), Expect = 0.004
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 97 PKCNICLG-KTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRC 148
P+C +C K SG +++L+C C GYH C P+ S W C+ C
Sbjct: 386 PECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVP---TNGWKCKNC 435
Score = 32.7 bits (73), Expect = 0.22
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 98 KCNIC--LGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLT----PWFCRRCIF 150
+C +C GK + P +L+C C + YH C D PL T W C+ C++
Sbjct: 1006 ECTVCEACGKATDP-GRLLLCDDCDISYHTYC-------LDPPLQTVPKGGWKCKWCVW 1056
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform
2 [Homo sapiens]
Length = 1214
Score = 37.0 bits (84), Expect = 0.012
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCH-IPIAGSADQPLLTPWFCRRCI 149
E+ C IC N IL C C L HQ+C+ +P W CRRC+
Sbjct: 272 EDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQ------WLCRRCL 321
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 37.0 bits (84), Expect = 0.012
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCH-IPIAGSADQPLLTPWFCRRCI 149
E+ C IC+ N IL C C L HQ+C+ +P W CR C+
Sbjct: 213 EDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQ------WLCRHCL 262
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
1 [Homo sapiens]
Length = 1220
Score = 37.0 bits (84), Expect = 0.012
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCH-IPIAGSADQPLLTPWFCRRCI 149
E+ C IC N IL C C L HQ+C+ +P W CRRC+
Sbjct: 272 EDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQ------WLCRRCL 321
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 36.6 bits (83), Expect = 0.015
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 95 EEPK-CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALA 153
E+P C +C S + +L+C C GYH +C P + + WFC C A
Sbjct: 181 EDPTFCEVC--GRSDREDRLLLCDGCDAGYHMECLDP---PLQEVPVDEWFCPECA-APG 234
Query: 154 VRVSLPSSPVPASPASSSGADQRLPSQSLSSKQKGHTWALETDSASATV 202
V ++ + PV S AD +P+ S + G T A+ S V
Sbjct: 235 VVLAADAGPVSEEEVSLLLADV-VPTTSRLRPRAGRTRAIARTRQSERV 282
>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
Length = 689
Score = 36.2 bits (82), Expect = 0.020
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 46 VLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNI-CLG 104
V C G+ Y K+K SS K + ED + +++ G + K NI C G
Sbjct: 466 VTCGEAKGILYKKKMKHGSSVK---CIRNEDGTWLTPNEFEVEGKGRNAKNWKRNIRCEG 522
Query: 105 KTSGPL---------------NEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCR 146
T G L ++L CG C +H+ CHIP A + L + FCR
Sbjct: 523 MTLGELLKRKNSDECEVCCQGGQLLCCGTCPRVFHEDCHIPPV-EAKRMLWSCTFCR 578
>gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]
Length = 713
Score = 36.2 bits (82), Expect = 0.020
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 46 VLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNI-CLG 104
V C G+ Y K+K SS K + ED + +++ G + K NI C G
Sbjct: 466 VTCGEAKGILYKKKMKHGSSVK---CIRNEDGTWLTPNEFEVEGKGRNAKNWKRNIRCEG 522
Query: 105 KTSGPL---------------NEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCR 146
T G L ++L CG C +H+ CHIP A + L + FCR
Sbjct: 523 MTLGELLKRKNSDECEVCCQGGQLLCCGTCPRVFHEDCHIPPV-EAKRMLWSCTFCR 578
>gi|117190334 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 35.8 bits (81), Expect = 0.026
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFAL 152
E+ C++C S N+++ C KC + HQ C+ G P W CR C+ +
Sbjct: 199 EDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACY----GILKVP-EGSWLCRSCVLGI 251
>gi|7662006 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 35.8 bits (81), Expect = 0.026
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFAL 152
E+ C++C S N+++ C KC + HQ C+ G P W CR C+ +
Sbjct: 199 EDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACY----GILKVP-EGSWLCRSCVLGI 251
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 35.8 bits (81), Expect = 0.026
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLT----PWFCRRCIFALAV 154
C +C G+ S P + +L+C C + YH C D PLLT W C+ C+ +
Sbjct: 1430 CEVC-GQASDP-SRLLLCDDCDISYHTYC-------LDPPLLTVPKGGWKCKWCVSCMQC 1480
Query: 155 RVSLP 159
+ P
Sbjct: 1481 GAASP 1485
Score = 31.2 bits (69), Expect = 0.65
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 97 PKCNICLG-KTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRC 148
P+C +C + G +++L+C C GYH C P ++ W C+ C
Sbjct: 271 PECKVCQACRKPGNDSKMLVCETCDKGYHTFCLKP---PMEELPAHSWKCKAC 320
Score = 30.8 bits (68), Expect = 0.85
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAV 154
EE +C +C G G L ++ C CG YH C + A +A + W C C A
Sbjct: 225 EEARCAVCEGP--GELCDLFFCTSCGHHYHGAC-LDTALTARK--RAGWQCPECKVCQAC 279
Query: 155 R 155
R
Sbjct: 280 R 280
Score = 28.5 bits (62), Expect = 4.2
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 68 QSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILICGKCGLGYHQQC 127
Q+ +V F + K+ VL +D+ C +C G +L C +C YH C
Sbjct: 1361 QNTVVLFSNTDKF-VLMQDM-----------CVVCGSFGRGAEGHLLACSQCSQCYHPYC 1408
Query: 128 HIPIAGSADQPLLTPWFCRRCI 149
+ LL W C CI
Sbjct: 1409 --VNSKITKVMLLKGWRCVECI 1428
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 35.8 bits (81), Expect = 0.026
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCH-IPIAGSADQPLLTPWFCRRCIFALA 153
E+ C +CL N IL C C L HQ+C+ +P W CR C+
Sbjct: 211 EDAFCCVCLDDECHNSNVILFCDICNLAVHQECYGVPYIPEGQ------WLCRCCL---- 260
Query: 154 VRVSLPSSPV 163
PS PV
Sbjct: 261 ---QSPSRPV 267
>gi|215599585 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 35.8 bits (81), Expect = 0.026
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIP--IAGSADQPLLTPWFCRRCIFALAVRV 156
C +C N+++ C +C YH+ CH P A+ P L W+C RC + R+
Sbjct: 162 CVVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLV-WYCARCTRQMK-RM 219
Query: 157 SLPSSPVPASPA 168
+ + P PA
Sbjct: 220 AQKTQKPPQKPA 231
>gi|21361851 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 35.8 bits (81), Expect = 0.026
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIP--IAGSADQPLLTPWFCRRCIFALAVRV 156
C +C N+++ C +C YH+ CH P A+ P L W+C RC + R+
Sbjct: 162 CVVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLV-WYCARCTRQMK-RM 219
Query: 157 SLPSSPVPASPA 168
+ + P PA
Sbjct: 220 AQKTQKPPQKPA 231
>gi|120659785 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 35.4 bits (80), Expect = 0.034
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPI----AGSADQPLLTPWFCRRCIFALAV 154
C+ C G + + L C CGL YH++C I +G+ + L + L
Sbjct: 152 CDHCGEMLFGLVRQGLKCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGT 211
Query: 155 RVSLPSSPVPASPASSSGADQRLPSQSLSSKQKGHT 190
SLP + S +++ +R PS S SS +T
Sbjct: 212 SESLPCTAEELSRSTTELLPRRPPSSSSSSSASSYT 247
>gi|120659782 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 35.4 bits (80), Expect = 0.034
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPI----AGSADQPLLTPWFCRRCIFALAV 154
C+ C G + + L C CGL YH++C I +G+ + L + L
Sbjct: 152 CDHCGEMLFGLVRQGLKCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGT 211
Query: 155 RVSLPSSPVPASPASSSGADQRLPSQSLSSKQKGHT 190
SLP + S +++ +R PS S SS +T
Sbjct: 212 SESLPCTAEELSRSTTELLPRRPPSSSSSSSASSYT 247
>gi|19923468 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 35.4 bits (80), Expect = 0.034
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPI----AGSADQPLLTPWFCRRCIFALAV 154
C+ C G + + L C CGL YH++C I +G+ + L + L
Sbjct: 152 CDHCGEMLFGLVRQGLKCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGT 211
Query: 155 RVSLPSSPVPASPASSSGADQRLPSQSLSSKQKGHT 190
SLP + S +++ +R PS S SS +T
Sbjct: 212 SESLPCTAEELSRSTTELLPRRPPSSSSSSSASSYT 247
>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
Length = 509
Score = 34.7 bits (78), Expect = 0.059
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAV 154
E+ C++C NE++ C KC + HQ C+ G P W CR C +
Sbjct: 202 EDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY----GILKVP-EGSWLCRTCALGVQP 256
Query: 155 RVSLPSSPVPASPASSSG 172
+ L A + SG
Sbjct: 257 KCLLCPKKGGAMKPTRSG 274
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 34.7 bits (78), Expect = 0.059
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAV 154
E+ C++C NE++ C KC + HQ C+ G P W CR C +
Sbjct: 202 EDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY----GILKVP-EGSWLCRTCALGVQP 256
Query: 155 RVSLPSSPVPASPASSSG 172
+ L A + SG
Sbjct: 257 KCLLCPKKGGAMKPTRSG 274
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 34.7 bits (78), Expect = 0.059
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 95 EEPKCNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRC 148
E+ C++C NE++ C KC + HQ C+ G P W CR C
Sbjct: 198 EDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACY----GILKVP-TGSWLCRTC 246
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 33.9 bits (76), Expect = 0.100
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCI 149
C++C G+ ++L C KC YH +C P + W C +C+
Sbjct: 1482 CHVC-GRQHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV 1531
>gi|120659787 protein kinase D2 isoform B [Homo sapiens]
Length = 721
Score = 33.1 bits (74), Expect = 0.17
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 108 GPLNEILICGKCGLGYHQQCHIPI----AGSADQPLLTPWFCRRCIFALAVRVSLPSSPV 163
G + + L C CGL YH++C I +G+ + L + L SLP +
Sbjct: 4 GLVRQGLKCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGTSESLPCTAE 63
Query: 164 PASPASSSGADQRLPSQSLSSKQKGHT 190
S +++ +R PS S SS +T
Sbjct: 64 ELSRSTTELLPRRPPSSSSSSSASSYT 90
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 33.1 bits (74), Expect = 0.17
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 149 IFALAVRVSLPSSPVPASPASSSGADQRLPSQSLSSKQKGHTWALETDSASAT 201
+ A+AVRV+ P P S A+ L ++ S ++ H WA T + T
Sbjct: 403 VSAVAVRVAQAGDPAPTSAATRRSTLPALGARQPSGAKQNHAWAFHTSQGTLT 455
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,998,500
Number of Sequences: 37866
Number of extensions: 432774
Number of successful extensions: 2245
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2033
Number of HSP's gapped (non-prelim): 286
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.