Guide to the Human Genome
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Name: RNF133 Sequence: fasta or formatted (376aa) NCBI GI: 21040269
Description:

ring finger protein 133

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         14           1
 C cysteine            3.2         12           2
 D aspartate           2.7         10           1
 E glutamate           6.4         24           3
 F phenylalanine       4.3         16           2
 G glycine             6.4         24           2
 H histidine           4.0         15           1
 I isoleucine          7.7         29           2
 K lysine              5.1         19           2
 L leucine             7.7         29           2
 M methionine          2.1          8           1
 N asparagine          6.6         25           2
 P proline             4.8         18           2
 Q glutamine           3.7         14           1
 R arginine            4.0         15           2
 S serine              6.1         23           2
 T threonine           6.6         25           2
 V valine             10.9         41           4
 W tryptophan          2.1          8           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 133 
RNF148                0.436   ring finger protein 148 
RNF128                0.430   ring finger protein 128 isoform 1 
RNF128                0.394   ring finger protein 128 isoform 2 
RNF150                0.242   ring finger protein 150 
RNF149                0.218   ring finger protein 149 
RNF130                0.198   ring finger protein 130 
RNF13                 0.084   ring finger protein 13 
RNF13                 0.084   ring finger protein 13 
RNF167                0.066   ring finger protein 167 
ZNRF4                 0.058   zinc and ring finger 4 
ZNRF3                 0.056   zinc and ring finger 3 
RNF145                0.053   ring finger protein 145 
RNF215                0.052   ring finger protein 215 
RNF43                 0.048   ring finger protein 43 
RNF44                 0.046   ring finger protein 44 
RNF24                 0.042   ring finger protein 24 isoform 2 
RNF24                 0.042   ring finger protein 24 isoform 1 
RNF24                 0.042   ring finger protein 24 isoform 1 
RNF38                 0.042   ring finger protein 38 isoform 2 
RNF38                 0.042   ring finger protein 38 isoform 2 
RNF38                 0.042   ring finger protein 38 isoform 3 
RNF38                 0.042   ring finger protein 38 isoform 2 
RNF38                 0.042   ring finger protein 38 isoform 1 
RNF115                0.042   Rabring 7 
LOC100290625          0.042   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.042   PREDICTED: hypothetical protein XP_002342853 
DZIP3                 0.042   DAZ interacting protein 3, zinc finger 
RNF165                0.040   ring finger protein 165 
PJA1                  0.040   praja 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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