Guide to the Human Genome
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Name: RNF13 Sequence: fasta or formatted (381aa) NCBI GI: 6005864
Description:

ring finger protein 13

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt mRNA [381aa] ring finger protein 13
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         21           2
 C cysteine            2.6         10           1
 D aspartate           8.4         32           2
 E glutamate           7.1         27           2
 F phenylalanine       4.2         16           1
 G glycine             4.2         16           2
 H histidine           2.4          9           1
 I isoleucine          7.1         27           2
 K lysine              6.0         23           2
 L leucine            10.5         40           2
 M methionine          1.6          6           1
 N asparagine          5.2         20           1
 P proline             5.2         20           3
 Q glutamine           3.4         13           1
 R arginine            3.9         15           2
 S serine              7.9         30           2
 T threonine           4.2         16           1
 V valine              7.1         27           3
 W tryptophan          0.3          1           1
 Y tyrosine            3.1         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 13 
RNF13                 1.000   ring finger protein 13 
RNF167                0.410   ring finger protein 167 
ZNRF4                 0.255   zinc and ring finger 4 
RNF150                0.100   ring finger protein 150 
RNF130                0.097   ring finger protein 130 
RNF128                0.088   ring finger protein 128 isoform 2 
RNF133                0.085   ring finger protein 133 
RNF128                0.081   ring finger protein 128 isoform 1 
ZNRF3                 0.078   zinc and ring finger 3 
RNF148                0.077   ring finger protein 148 
RNF149                0.077   ring finger protein 149 
RLIM                  0.073   ring finger protein, LIM domain interacting 
RLIM                  0.073   ring finger protein, LIM domain interacting 
RNF38                 0.061   ring finger protein 38 isoform 2 
RNF38                 0.061   ring finger protein 38 isoform 2 
RNF38                 0.061   ring finger protein 38 isoform 3 
RNF38                 0.061   ring finger protein 38 isoform 2 
RNF38                 0.061   ring finger protein 38 isoform 1 
RNF24                 0.057   ring finger protein 24 isoform 2 
RNF24                 0.057   ring finger protein 24 isoform 1 
RNF24                 0.057   ring finger protein 24 isoform 1 
RNF44                 0.057   ring finger protein 44 
RNF43                 0.053   ring finger protein 43 
RNF6                  0.051   ring finger protein 6 
RNF6                  0.051   ring finger protein 6 
RNF6                  0.051   ring finger protein 6 
RNF215                0.049   ring finger protein 215 
RNF165                0.047   ring finger protein 165 
RNF122                0.047   ring finger protein 122 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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