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Search of human proteins with 5730079
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730079 FUS interacting protein (serine-arginine rich) 1
isoform 1 [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 384 e-107
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 376 e-105
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 342 1e-94
gi|148612890 serine-arginine repressor protein [Homo sapiens] 218 2e-57
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 100 5e-22
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 93 1e-19
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 92 2e-19
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 91 4e-19
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 84 7e-17
gi|9558733 transformer-2 alpha [Homo sapiens] 75 2e-14
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 74 7e-14
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 73 2e-13
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 61 6e-10
gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens] 61 6e-10
gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens] 61 6e-10
gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens] 59 2e-09
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 58 5e-09
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 57 9e-09
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 57 9e-09
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 57 9e-09
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 56 2e-08
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 56 2e-08
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 56 2e-08
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 56 2e-08
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 56 2e-08
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 56 2e-08
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 56 2e-08
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 56 2e-08
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 56 2e-08
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 55 3e-08
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 384 bits (985), Expect = e-107
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 180
SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 180
Query: 181 RKI 183
RKI
Sbjct: 181 RKI 183
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 376 bits (965), Expect = e-105
Identities = 181/182 (99%), Positives = 181/182 (99%), Gaps = 1/182 (0%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 180
SRSYERRRSRSRSFDYNYRRSYSPRN RPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRN-RPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 179
Query: 181 RK 182
RK
Sbjct: 180 RK 181
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 342 bits (876), Expect = 1e-94
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
Score = 28.9 bits (63), Expect = 2.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 87 QGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRS 141
+G KT ++ K G SR + R +S+SRS R RS+SRS + +S
Sbjct: 206 RGTSKTDSKTHYKSGSRYEKESRKKEPPR-SKSQSRSQSRSRSKSRSRSWTSPKS 259
Score = 26.9 bits (58), Expect = 9.8
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 91 KTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSY-SPRNS 147
KT K + S SRY+ R ++ RS + RS+SRS + RS+ SP++S
Sbjct: 204 KTRGTSKTDSKTHYKSGSRYEKESR-KKEPPRSKSQSRSQSRSRSKSRSRSWTSPKSS 260
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 218 bits (556), Expect = 2e-57
Identities = 119/184 (64%), Positives = 133/184 (72%), Gaps = 19/184 (10%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
MSRY RPPNTSLF+RNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
VRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE R+ S S +RRSR
Sbjct: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPS------DHRRSR 113
Query: 121 SRSYERRRSRSRSFDYNYRR------------SYSPRNSRPTGRPRRSRSHSDNDRPNCS 168
S S R RSRS S+ N RR SYS SR PRRS S + P +
Sbjct: 114 SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN 173
Query: 169 WNTQ 172
+ ++
Sbjct: 174 FGSR 177
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 100 bits (250), Expect = 5e-22
Identities = 73/193 (37%), Positives = 97/193 (50%), Gaps = 32/193 (16%)
Query: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 59 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDR-------------------------KTP 93
D RDAEDA+ +D + GR++ +Q A+ R ++P
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSP 122
Query: 94 NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRP 153
+ + R+ S SR RY RS+SRS R RSRS S + RRS S +S R
Sbjct: 123 RRRRRSRSRS-RSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
Query: 154 R-RSRSHSDNDRP 165
R RSRS S + P
Sbjct: 182 RSRSRSRSRSPPP 194
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 93.2 bits (230), Expect = 1e-19
Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDY------D 114
RDA DA+ LD + +CG ++ ++ + G++++ N+ + DDY
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPS----WGRRPRDDYRRRSPPP 111
Query: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSHS-DNDR 164
R R R RS+ R RSRS S D RS S RN +P+ RSRS S N+R
Sbjct: 112 RRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNER 163
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 92.4 bits (228), Expect = 2e-19
Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
+L V N+ T + LRR F +YG + DVY+P + +T+ PRGFA+V+F D RDA+DA
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 71 LDRKWICGRQIEIQFAQ-GDRKTPNQMKAKE---------GRNVYSSSRYDDYDRYR-RS 119
+D + GR++ +Q A+ G R P + + GR S R R R RS
Sbjct: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
Query: 120 RSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYT 179
RSR RSRSRS R S SP + P R R SRS R ++Y ++Y+
Sbjct: 135 RSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR---ESRYGGSHYS 191
Query: 180 S 180
S
Sbjct: 192 S 192
Score = 32.7 bits (73), Expect = 0.18
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 97 KAKEGRNVYSSSRYDD--YDRYRRSRS----------------RSYERRRSRSRSFDYNY 138
+++ G + YSSS Y + Y RY SRS +S RRS+S S +
Sbjct: 182 ESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSR 241
Query: 139 RRSYSPRNSR--PTGRPRRSRSHSDNDRP 165
RS S +R P R+S+S S + RP
Sbjct: 242 SRSRSSSMTRSPPRVSKRKSKSRSRSKRP 270
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 91.3 bits (225), Expect = 4e-19
Identities = 67/174 (38%), Positives = 87/174 (50%), Gaps = 21/174 (12%)
Query: 1 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 60 DVRDAEDALHNLDRKWICGRQIEIQFAQG-------DRK------TPNQMKAKEGRNVYS 106
D RDAEDA+ LD K ICG ++ ++ + G DR PN + G +
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY 115
Query: 107 SSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHS 160
+ Y R RRSRSRS R SRSR Y+ RS S + PRRSRS S
Sbjct: 116 AYDCHRYSRRRRSRSRS--RSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSIS 167
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/53 (52%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 108 SRYDDYDRYRRSRSRSYER-RRSRSRSFDYNYRRSYSPRNSR-PTGRPRRSRS 158
SRY RSRSRS R R SRS+S RS SP+ SR P+G PRRS S
Sbjct: 187 SRYFQSPSRSRSRSRSISRPRSSRSKS------RSPSPKRSRSPSGSPRRSAS 233
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 84.0 bits (206), Expect = 7e-17
Identities = 66/171 (38%), Positives = 83/171 (48%), Gaps = 20/171 (11%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
PN L V ++ T DLR F +YGPI DV + D +RR RGFA+V FE+V DA++A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127
+ + GR+I + F+ R GR Y SSR DY Y R R Y+ R
Sbjct: 176 KERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY--YDRGYDRGYDDR 233
Query: 128 RSRSRSF----------------DYNY-RRSYSPRNSRPTGRPR-RSRSHS 160
SRS+ D Y RRS SP SR R R RSRS+S
Sbjct: 234 DYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYS 284
Score = 52.8 bits (125), Expect = 2e-07
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 94 NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRP 153
++ K++ S SR Y RSRSRS RRSRSRS+ +YRR +S +S P
Sbjct: 46 SRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHS-PMSTR 104
Query: 154 RRSRSHSDNDRPNCSWNTQYSSAYYTSRKI 183
RR + N PNC S Y T R +
Sbjct: 105 RRHVGNRANPDPNCCLGVFGLSLYTTERDL 134
Score = 33.5 bits (75), Expect = 0.10
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 115 RYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQY 173
R+ +RSRS E RRSRS+S + RS S R+SR RSRS S + S++ Y
Sbjct: 31 RHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDY 90
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 75.5 bits (184), Expect = 2e-14
Identities = 62/176 (35%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 2 SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61
SR PNT L V ++ T DLR F RYGP+ V V D T R RGFA+V FE +
Sbjct: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
Query: 62 RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-------------- 107
D+++A+ + + GR+I + ++ R GR +S
Sbjct: 171 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGG 230
Query: 108 ----------------SRYDDYD-RY-RRSRSRSYERRRSRSRSFDYNYRRSYSPR 145
RY+DYD RY RRS S Y R RSRSRS RSYSPR
Sbjct: 231 GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRS------RSYSPR 280
Score = 47.0 bits (110), Expect = 9e-06
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 106 SSSRYDDYDRYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
S SR + RY RSRS S+ RRRSRSRS+ YRR S +S + R R + S ++ D
Sbjct: 58 SRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPD- 116
Query: 165 PNCSWNTQYSSAYYTSRKI 183
PN S Y T R +
Sbjct: 117 PNTCLGVFGLSLYTTERDL 135
Score = 43.1 bits (100), Expect = 1e-04
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 92 TPNQMKAKEGRNVYSSSRY----DDYDRYR---RSRSRSYERRR-SRSRSFDYNYRRSYS 143
TP ++K++ S SR + + R R RSRSR + RR +RSRS +++RR
Sbjct: 24 TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSR 83
Query: 144 PRNSRPTGRPRRSRSHS 160
R+ P R RRSRSHS
Sbjct: 84 SRSYTPEYRRRRSRSHS 100
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 73.9 bits (180), Expect = 7e-14
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFV ++ DT + L + F +YG I +V V D T+R RGF +V FE++ DA+DA+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK-----AKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
+ K + GRQI + Q + + N+ + + GR + R R R Y
Sbjct: 68 NGKSVDGRQIRVD--QAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 127 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDND 163
R SRS Y R Y S+ G RS S D
Sbjct: 126 NRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 72.8 bits (177), Expect = 2e-13
Identities = 60/176 (34%), Positives = 80/176 (45%), Gaps = 27/176 (15%)
Query: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
+LFV V DT LRREF YGPI +++ + +PRG+A++++E RD A +
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 71 LDRKWICGRQIEIQFAQGDRK---TPNQMKAKEGR--------NVYSSSRYDDYDRY--- 116
D K I GR++ + +G P ++ G N+ S R DD RY
Sbjct: 164 ADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR-DDTSRYDER 222
Query: 117 -------RRSRSRSYER-RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
R R R ER RR RSR D R R SR R RRSRS +R
Sbjct: 223 PGPSPLPHRDRDRDRERERRERSRERDKERER----RRSRSRDRRRRSRSRDKEER 274
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 89 DRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNS 147
DR+ + +++E R DR RRSRSR E RRRSR RS D + R R+S
Sbjct: 236 DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKD--RDRKRRSS 293
Query: 148 RPTGRPRRSRSHSDNDR 164
R R RR R + R
Sbjct: 294 RSRERARRERERKEELR 310
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 60.8 bits (146), Expect = 6e-10
Identities = 31/107 (28%), Positives = 62/107 (57%), Gaps = 10/107 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+++ ++ + R +D++R F YG +++V + G+ +V+FED RDA+DA++ L
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK--------NGYGFVEFEDSRDADDAVYEL 55
Query: 72 DRKWICGRQIEIQFAQGDRKTPN--QMKAKEGRNVYSSSRYDDYDRY 116
+ K +CG ++ ++ A+G R+ + ++ G YSS R D+Y
Sbjct: 56 NGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKY 102
Score = 43.9 bits (102), Expect = 8e-05
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 56 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR 115
++F D + AL LD I GR I + D+ + ++ G S SR R
Sbjct: 151 IEFRSYSDMKRALDKLDGTEINGRNIRLI---EDKPRTSHRRSYSGSRSRSRSR-----R 202
Query: 116 YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHS 160
RSRSR R RSRS S + RS S SR + R+SRS S
Sbjct: 203 RSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKS 247
Score = 34.7 bits (78), Expect = 0.047
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 91 KTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER-----------RRSRSRS------ 133
++ ++ K K R +S SR D Y +SRSRS R +SRSRS
Sbjct: 244 RSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNS 303
Query: 134 ---FDYNYRRSYSPRNSRPTGRPR-RSRSHS 160
+ RS SP R T R R RSRS S
Sbjct: 304 PLPVPPSKARSVSPPPKRATSRSRSRSRSKS 334
>gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]
Length = 296
Score = 60.8 bits (146), Expect = 6e-10
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
L+V +A++ + L F +G I D+ +PLD+ T + RGFA+V+FE DA A+ N+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRS 131
+ + GR I + A+ P ++K R V+S D D ++ ++ E +
Sbjct: 68 NESELFGRTIRVNLAK-----PMRIKEGSSRPVWS-----DDDWLKKFSGKTLEENKEEE 117
Query: 132 RS 133
S
Sbjct: 118 GS 119
>gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens]
Length = 301
Score = 60.8 bits (146), Expect = 6e-10
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
L+V +A++ + L F +G I D+ +PLD+ T + RGFA+V+FE DA A+ N+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRS 131
+ + GR I + A+ P ++K R V+S D D ++ ++ E +
Sbjct: 68 NESELFGRTIRVNLAK-----PMRIKEGSSRPVWS-----DDDWLKKFSGKTLEENKEEE 117
Query: 132 RS 133
S
Sbjct: 118 GS 119
>gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens]
Length = 492
Score = 59.3 bits (142), Expect = 2e-09
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 5 LRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDA 64
++PP LFV + T EDL F R+GPI V D+ T +A+++FE D
Sbjct: 235 IKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDC 294
Query: 65 EDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR 115
E A +D I R+I + F+Q K + K K G+ Y+ S + +Y++
Sbjct: 295 EKAFFKMDNVLIDDRRIHVDFSQSVAKV--KWKGKGGK--YTKSDFKEYEK 341
Score = 26.9 bits (58), Expect = 9.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 94 NQMKAKEGRNVYSSSRYDDY--DRYRRSRSRSYERRRSRSRSFD 135
++ +++E YS+S Y D Y R RS+ +R RS +S D
Sbjct: 442 SRSRSRERDGHYSNSHKSKYQTDLYERERSKKRDRSRSPKKSKD 485
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 57.8 bits (138), Expect = 5e-09
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
S++V NV +E+L F G + V + D ++ P+GFAY++F D +L
Sbjct: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 231
Query: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSR 130
LD GRQI++ + + R S++ R + R R R
Sbjct: 232 LDESLFRGRQIKV------------IPKRTNRPGISTT------------DRGFPRARYR 267
Query: 131 SRSFDYNYRRS--YSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQY 173
+R+ +YN RS YS NSRP GR R R+ + SW + Y
Sbjct: 268 ARTTNYNSSRSRFYSGFNSRPRGRVYRGRARA------TSWYSPY 306
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 9e-09
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFVRN+ + EDL + F +YGP+ +++ P+D T++P+GFA++ F A A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK--AKEGRNVYSSSRY 110
D + GR + + P+ +K A E + SS Y
Sbjct: 464 DGQVFQGRMLHV--------LPSTIKKEASEDASALGSSSY 496
Score = 35.0 bits (79), Expect = 0.036
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFY-TRRPRGFAYVQFEDVRDAEDAL 68
+ + VRN+ S ++R F +G + V +P T RGF +V F +DA+ A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 69 HNL-DRKWICGRQIEIQFAQGD 89
+ L + GR++ +++A +
Sbjct: 892 NALCHSTHLYGRRLVLEWADSE 913
Score = 34.7 bits (78), Expect = 0.047
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL---DFYTRRPRGFAYVQFEDVRDA 64
P +LF++N+ DT E L+ F + G + + GF +V++ A
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 65 EDALHNLDRKWICGRQIEIQFAQ 87
+ AL L + G ++E++ ++
Sbjct: 788 QKALKQLQGHVVDGHKLEVRISE 810
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 9e-09
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFVRN+ + EDL + F +YGP+ +++ P+D T++P+GFA++ F A A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK--AKEGRNVYSSSRY 110
D + GR + + P+ +K A E + SS Y
Sbjct: 464 DGQVFQGRMLHV--------LPSTIKKEASEDASALGSSSY 496
Score = 35.0 bits (79), Expect = 0.036
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFY-TRRPRGFAYVQFEDVRDAEDAL 68
+ + VRN+ S ++R F +G + V +P T RGF +V F +DA+ A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 69 HNL-DRKWICGRQIEIQFAQGD 89
+ L + GR++ +++A +
Sbjct: 892 NALCHSTHLYGRRLVLEWADSE 913
Score = 34.7 bits (78), Expect = 0.047
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL---DFYTRRPRGFAYVQFEDVRDA 64
P +LF++N+ DT E L+ F + G + + GF +V++ A
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 65 EDALHNLDRKWICGRQIEIQFAQ 87
+ AL L + G ++E++ ++
Sbjct: 788 QKALKQLQGHVVDGHKLEVRISE 810
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 9e-09
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LFVRN+ + EDL + F +YGP+ +++ P+D T++P+GFA++ F A A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMK--AKEGRNVYSSSRY 110
D + GR + + P+ +K A E + SS Y
Sbjct: 464 DGQVFQGRMLHV--------LPSTIKKEASEDASALGSSSY 496
Score = 35.0 bits (79), Expect = 0.036
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFY-TRRPRGFAYVQFEDVRDAEDAL 68
+ + VRN+ S ++R F +G + V +P T RGF +V F +DA+ A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 69 HNL-DRKWICGRQIEIQFAQGD 89
+ L + GR++ +++A +
Sbjct: 892 NALCHSTHLYGRRLVLEWADSE 913
Score = 34.7 bits (78), Expect = 0.047
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL---DFYTRRPRGFAYVQFEDVRDA 64
P +LF++N+ DT E L+ F + G + + GF +V++ A
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 65 EDALHNLDRKWICGRQIEIQFAQ 87
+ AL L + G ++E++ ++
Sbjct: 788 QKALKQLQGHVVDGHKLEVRISE 810
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 56.2 bits (134), Expect = 2e-08
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+++ ++ R D+ R F YG I++V + G+ +V+F+D+RDA+DA++ L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK--------NGYGFVEFDDLRDADDAVYEL 55
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSR 122
+ K +CG ++ ++ A+G R+ + + G Y S D Y R+ R
Sbjct: 56 NGKDLCGERVIVEHARGPRRDGSYGSGRSGYG-YRRSGRDKYGPPTRTEYR 105
Score = 50.1 bits (118), Expect = 1e-06
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 3 RYLRPPNTS--LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
+Y P T L V N++ +DL+ + G + D + R + ++F
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYA----DAHKGR-KNEGVIEFVS 149
Query: 61 VRDAEDALHNLDRKWICGRQIE-IQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYR-- 117
D + AL LD + GR+I ++ G R+ + +++ S SR+ R R
Sbjct: 150 YSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSG 209
Query: 118 ---------RSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHS 160
RSRSRS R RS+SRS + RS ++ P+ RSRSHS
Sbjct: 210 SSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHS 261
Score = 36.6 bits (83), Expect = 0.012
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 90 RKTPNQMKAKEGRNVYSSSRYDDYDRYR-RSRSRSYERRRSRSRSFDYNYRRSYSPRNSR 148
R++ ++ ++K G S SR D+ + R RSR R RSRSRS R+ S R+S+
Sbjct: 328 RQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSK 387
Query: 149 PTGRPRRSRSHSDNDR 164
++ + +D +
Sbjct: 388 AGSSKKKKKEDTDRSQ 403
Score = 30.0 bits (66), Expect = 1.2
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 91 KTPNQMKAK-EGRNVYSSSRYDDYDRYRRSRSRSYERR----RSRSRSFDYNYRRSYSPR 145
++P++ K+K + R+ R ++ R SR RS E+ RSRSRS + RS S
Sbjct: 289 RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRS 348
Query: 146 NSRP--TGRPR-------RSRSHSDNDRPNCSWNTQYSSAYYTSRK 182
S+ GR R RSRS S ++R + + S A + +K
Sbjct: 349 KSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKK 394
Score = 29.6 bits (65), Expect = 1.5
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 94 NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRR------SRSRSFDYNYRRSYSPRNS 147
++ +EGR S ++ RSRSRS + + SRSRS + RS S S
Sbjct: 420 SESSQREGRG---ESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRS 476
Query: 148 RPTGR-PRRSRSHS 160
R R P RSRS S
Sbjct: 477 RSASRSPSRSRSRS 490
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 106 SSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSP-------RNSRPTGRPRRSRS 158
S SR R ++ +SRS + +SRSRS RS S +N+ G+P +SRS
Sbjct: 232 SRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKP-KSRS 290
Query: 159 HS 160
S
Sbjct: 291 PS 292
Score = 27.7 bits (60), Expect = 5.7
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 87 QGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRN 146
+G ++ N +E R+ S+ + SRSRS ++RSRS + S SP
Sbjct: 426 EGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSR 485
Query: 147 SRPTGRPRRSRSHS 160
S RSRSHS
Sbjct: 486 S-------RSRSHS 492
Score = 27.3 bits (59), Expect = 7.5
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 87 QGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRN 146
+G+ + + R+ +S + RSRS+S + RSRS+S + RS S
Sbjct: 428 RGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSR 487
Query: 147 SRPTGR 152
SR R
Sbjct: 488 SRSHSR 493
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 56.2 bits (134), Expect = 2e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + +T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 DRKWICGRQIEIQFA 86
+ K + G+ I+++ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
Score = 27.3 bits (59), Expect = 7.5
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 22/77 (28%)
Query: 107 SSRYDDY-----------DRYRRSRSRSYERRRSR----SRSFDYNYRRSYSP----RNS 147
SSRYDDY D Y SRS Y R R R + R Y P +S
Sbjct: 307 SSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSS 366
Query: 148 RPTGRPR---RSRSHSD 161
G PR R S SD
Sbjct: 367 SSRGAPRGGGRGGSRSD 383
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 55.8 bits (133), Expect = 2e-08
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + T + L+ EFG+YG I+ V++ D T + RGFA+V FE DA+ A ++
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRS 131
+ K++ G+ I M A+ + + SSR+ SRSR R R
Sbjct: 70 NGKYLDGKAI--------------MVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGG 115
Query: 132 RSFDYNYRRSYSPRNSRPTGRPRRSRSHS 160
SP+ GRP R ++
Sbjct: 116 S----------SPQRPPSQGRPDDGRGYA 134
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 55.8 bits (133), Expect = 2e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + +T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 DRKWICGRQIEIQFA 86
+ K + G+ I+++ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 55.8 bits (133), Expect = 2e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
LF+ + +T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 DRKWICGRQIEIQFA 86
+ K + G+ I+++ A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 13 FVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
F+ + +T + L FG+YG IV+V++ D T + RGFA++ FE DA+DA +++
Sbjct: 11 FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70
Query: 73 RKWICGRQIEIQ------FAQGDRKTPNQMKAKEGRNVYSSSR 109
K + G+ I+++ F G R P +++ V R
Sbjct: 71 GKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGR 113
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 13 FVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
F+ + +T + L FG+YG IV+V++ D T + RGFA++ FE DA+DA +++
Sbjct: 11 FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70
Query: 73 RKWICGRQIEIQ------FAQGDRKTPNQMKAKEGRNVYSSSR 109
K + G+ I+++ F G R P +++ V R
Sbjct: 71 GKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGR 113
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 55.8 bits (133), Expect = 2e-08
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+F+ + R +D+ R F YG I D+ + RGF +V+FED RDA+DA++ L
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR---- 127
D K +C ++ I+ A+ + + GR YS DR+ R R+ R
Sbjct: 58 DGKELCSERVTIEHARA------RSRGGRGRGRYS-------DRFSSRRPRNDRRNAPPV 104
Query: 128 RSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRP 165
R+ +R N S ++ + R + +D RP
Sbjct: 105 RTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP 142
Score = 52.4 bits (124), Expect = 2e-07
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 56 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-SRYDDYD 114
V+F D ++A+ L K I GR+I++ +G ++ R SS SR
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL--IEGSKRHSRSRSRSRSRTRSSSRSRSRSRS 206
Query: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
R R+S SRS R RSRSRS + RS P S+ G RS+S + DR
Sbjct: 207 RSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR 256
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 55.8 bits (133), Expect = 2e-08
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
+F+ + R +D+ R F YG I D+ + RGF +V+FED RDA+DA++ L
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
Query: 72 DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR---- 127
D K +C ++ I+ A+ + + GR YS DR+ R R+ R
Sbjct: 58 DGKELCSERVTIEHARA------RSRGGRGRGRYS-------DRFSSRRPRNDRRNAPPV 104
Query: 128 RSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRP 165
R+ +R N S ++ + R + +D RP
Sbjct: 105 RTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP 142
Score = 52.4 bits (124), Expect = 2e-07
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 56 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-SRYDDYD 114
V+F D ++A+ L K I GR+I++ +G ++ R SS SR
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL--IEGSKRHSRSRSRSRSRTRSSSRSRSRSRS 206
Query: 115 RYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
R R+S SRS R RSRSRS + RS P S+ G RS+S + DR
Sbjct: 207 RSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR 256
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 55.1 bits (131), Expect = 3e-08
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
P SL+V ++ D L +F GPI+ + V D TRR G+AY+ F+ DAE A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 68 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYD 114
L ++ + + G+ I I ++Q D P K+ G N++ + D D
Sbjct: 69 LDTMNFEMLKGQPIRIMWSQRD---PGLRKSGVG-NIFIKNLEDSID 111
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
++F++N+ D ++ L F +G I+ V D + R GF +V FE A+ A++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINT 157
Query: 71 LDRKWICGRQIEIQFAQGDRKTPNQM--KAKEGRNVYSSSRYDDYD 114
++ + R++ + + R+ ++ +A E N+Y + D D
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 3 RYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
R R +L+V+N+ D + LR+EF YG I V + +GF +V F
Sbjct: 287 RLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPE 344
Query: 63 DAEDALHNLDRKWICGRQIEIQFAQ 87
+A A+ ++ + + + + + AQ
Sbjct: 345 EATKAVTEMNGRIVGTKPLYVALAQ 369
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,289,253
Number of Sequences: 37866
Number of extensions: 312506
Number of successful extensions: 3171
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 1244
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.