Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SFRS3 Sequence: fasta or formatted (164aa) NCBI GI: 4506901
Description:

splicing factor, arginine/serine-rich 3

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          6           2
 C cysteine            2.4          4           1
 D aspartate           5.5          9           2
 E glutamate           6.1         10           1
 F phenylalanine       3.7          6           1
 G glycine             6.7         11           1
 H histidine           1.2          2           1
 I isoleucine          0.0          0           0
 K lysine              3.0          5           1
 L leucine             5.5          9           1
 M methionine          0.6          1           1
 N asparagine          5.5          9           2
 P proline             8.5         14           3
 Q glutamine           0.0          0           0
 R arginine           24.4         40           3
 S serine             13.4         22           1
 T threonine           1.2          2           1
 V valine              4.9          8           1
 W tryptophan          1.2          2           1
 Y tyrosine            2.4          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splicing factor, arginine/serine-rich 3 
SFRS7                 0.431   splicing factor, arginine/serine-rich 7 
FUSIP1                0.226   FUS interacting protein (serine-arginine rich) 1 iso...
SFRS2                 0.223   splicing factor, arginine/serine-rich 2 
SRrp35                0.220   serine-arginine repressor protein 
FUSIP1                0.214   FUS interacting protein (serine-arginine rich) 1 isof...
LOC653884             0.201   PREDICTED: similar to FUS interacting protein (seri...
SFRS5                 0.192   splicing factor, arginine/serine-rich 5 
SFRS5                 0.192   splicing factor, arginine/serine-rich 5 
SFRS2B                0.189   splicing factor, arginine/serine-rich 2B 
SFRS1                 0.157   splicing factor, arginine/serine-rich 1 isoform 2 [...
SFRS1                 0.157   splicing factor, arginine/serine-rich 1 isoform 1 [Ho...
SNRNP70               0.151   U1 small nuclear ribonucleoprotein 70 kDa 
RNPS1                 0.148   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.148   RNA-binding protein S1, serine-rich domain 
LOC643446             0.142   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.142   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.142   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.142   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.142   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.142   PREDICTED: similar to ribonucleic acid binding prote...
SFRS6                 0.142   arginine/serine-rich splicing factor 6 
RBMXL1                0.135   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.135   RNA binding motif protein, X-linked-like 1 
SFRS4                 0.132   splicing factor, arginine/serine-rich 4 
LOC100288788          0.132   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.132   PREDICTED: hypothetical protein XP_002343863 
RBMX                  0.132   RNA binding motif protein, X-linked 
RBMY1A1               0.113   RNA binding motif protein, Y-linked, family 1, member...
RBMY1E                0.113   RNA binding motif protein, Y-linked, family 1, membe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press