Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 56912198
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56912198 solute carrier family 35, member D3 [Homo sapiens]
(416 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56912198 solute carrier family 35, member D3 [Homo sapiens] 813 0.0
gi|14028875 solute carrier family 35 (UDP-glucuronic acid/UDP-N-... 89 1e-17
gi|223029426 solute carrier family 35, member D2 [Homo sapiens] 78 2e-14
gi|109150412 hypothetical protein LOC85019 [Homo sapiens] 38 0.019
gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo ... 35 0.096
gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo ... 34 0.21
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 33 0.48
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 33 0.48
gi|169203406 PREDICTED: hypothetical protein [Homo sapiens] 32 0.81
gi|169202578 PREDICTED: hypothetical protein [Homo sapiens] 32 0.81
gi|68989256 ras inhibitor RIN1 [Homo sapiens] 32 0.81
gi|16306552 semaphorin Y [Homo sapiens] 32 0.81
gi|42822887 Duffy blood group antigen isoform b [Homo sapiens] 32 1.1
gi|171846251 Duffy blood group antigen isoform a [Homo sapiens] 32 1.1
gi|5032213 solute carrier family 35, member B1 [Homo sapiens] 32 1.1
gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo ... 32 1.4
gi|224282119 splicing factor, arginine/serine-rich 14 [Homo sapi... 31 1.8
gi|224282117 splicing factor, arginine/serine-rich 14 [Homo sapi... 31 1.8
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 31 1.8
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 31 2.4
gi|119220564 one cut domain, family member 2 [Homo sapiens] 31 2.4
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 31 2.4
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 30 3.1
gi|27262667 colony stimulating factor 1 isoform a precursor [Hom... 30 4.0
gi|27262661 colony stimulating factor 1 isoform a precursor [Hom... 30 4.0
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 30 4.0
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 30 4.0
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 30 5.3
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 30 5.3
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 30 5.3
>gi|56912198 solute carrier family 35, member D3 [Homo sapiens]
Length = 416
Score = 813 bits (2100), Expect = 0.0
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MRQLCRGRVLGISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLR 60
MRQLCRGRVLGISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLR
Sbjct: 1 MRQLCRGRVLGISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLR 60
Query: 61 RLGLIAVPPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGV 120
RLGLIAVPPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGV
Sbjct: 61 RLGLIAVPPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGV 120
Query: 121 LVLKNGAPSPGVLAAVLITTCGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASA 180
LVLKNGAPSPGVLAAVLITTCGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASA
Sbjct: 121 LVLKNGAPSPGVLAAVLITTCGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASA 180
Query: 181 DTEHGPLTAQYVIAVSATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMN 240
DTEHGPLTAQYVIAVSATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMN
Sbjct: 181 DTEHGPLTAQYVIAVSATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMN 240
Query: 241 FTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGSIIYCVA 300
FTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGSIIYCVA
Sbjct: 241 FTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGSIIYCVA 300
Query: 301 KFMETRKQSNYEDLEAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESR 360
KFMETRKQSNYEDLEAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESR
Sbjct: 301 KFMETRKQSNYEDLEAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESR 360
Query: 361 QEVRGSPRGVPLVAGSSEEGSRRSLKDAYLEVWRLVRGTRYMKKDYLIENEELPSP 416
QEVRGSPRGVPLVAGSSEEGSRRSLKDAYLEVWRLVRGTRYMKKDYLIENEELPSP
Sbjct: 361 QEVRGSPRGVPLVAGSSEEGSRRSLKDAYLEVWRLVRGTRYMKKDYLIENEELPSP 416
>gi|14028875 solute carrier family 35 (UDP-glucuronic
acid/UDP-N-acetylgalactosamine dual transporter), member
D1 [Homo sapiens]
Length = 355
Score = 88.6 bits (218), Expect = 1e-17
Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 5/295 (1%)
Query: 18 HGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAVPPFGLSLARS 77
+GV S + ++ K +++ Y+F V L + + L ++ P ++ R
Sbjct: 49 YGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKALRVVKFPDLDRNVPRK 108
Query: 78 FAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVL 137
+ +L L+S + L+LPM+ V +R L TM ++LK S G+ V
Sbjct: 109 TFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTF-SWGIKMTVF 167
Query: 138 ITTCGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAV-S 196
GA +A + DL D GY ++ ++ AA +++ E G Y A+
Sbjct: 168 AMIIGAFVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFM 227
Query: 197 ATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTTLHCTYINSAVTTS 256
P L I F D+ A F GW D + F ++G + + T+ CT NSA+TT+
Sbjct: 228 ILPTLAIAYFTG-DAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTT 286
Query: 257 FVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGSIIYCVAKFMETR--KQS 309
VG +K+I +GMV D T G+ ++ GS++Y F E + KQS
Sbjct: 287 IVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQS 341
>gi|223029426 solute carrier family 35, member D2 [Homo sapiens]
Length = 337
Score = 77.8 bits (190), Expect = 2e-14
Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 9/315 (2%)
Query: 8 RVLGISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAV 67
RV + A+ +G S + ++ K L++ Y F + + + L + + +I
Sbjct: 24 RVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFLGIGQMAATIMILYVSKLNKIIHF 83
Query: 68 PPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGA 127
P F + + +L L S LSLPM+ V ++ +T+L+ ++L
Sbjct: 84 PDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPLTLLLETIILGKQY 143
Query: 128 PSPGVLAAVLITTCGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPL 187
S ++ +V GA +A DL + GY+ L + AA V ++ E G
Sbjct: 144 -SLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDPKELGKY 202
Query: 188 TAQYVIAVSATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTTLHCT 247
+ A +I S ++ D A F WK+ + F+ +G + ++T+ C+
Sbjct: 203 GVLFYNACFMIIPTLIISVSTGDLQQATEFNQWKNVVFILQFLLSCFLGFLLMYSTVLCS 262
Query: 248 YINSAVTTSFVGVVKSIATITVGMVAFSDVEPTSLFIAGVVVNTLGSIIYCVAKFMETRK 307
Y NSA+TT+ VG +K+++ +G++ D + L G+ + G + Y F+
Sbjct: 263 YYNSALTTAVVGAIKNVSVAYIGILIGGDYIFSLLNFVGLNICMAGGLRY---SFLTLSS 319
Query: 308 QSNYEDLEAQPRGEE 322
Q L+ +P GEE
Sbjct: 320 Q-----LKPKPVGEE 329
>gi|109150412 hypothetical protein LOC85019 [Homo sapiens]
Length = 296
Score = 37.7 bits (86), Expect = 0.019
Identities = 39/189 (20%), Positives = 75/189 (39%), Gaps = 2/189 (1%)
Query: 30 KFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAVPPFGLSLARSFAGVAVLSTLQS 89
K+++S +F++ TL Q + L L + +LG + + S + +VL
Sbjct: 24 KYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSSRSHVLVWLPASVLFVGII 83
Query: 90 SLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVLITTCGAALAGAG 149
+L L++P+++ ++ K SP + + L+ A
Sbjct: 84 YAGSRALSRLAIPVFLTLHNVAEVIICGYQKCFQKEKT-SPAKICSALLLLAAAGCLPFN 142
Query: 150 DLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAVSATPLLVICSFAST 209
D +P GY ++ +L AY +L QK+ + + QY+ + + LL S +
Sbjct: 143 DSQFNPDGYFWAIIHLLCVGAYKIL-QKSQKPSALSDIDQQYLNYIFSVVLLAFASHPTG 201
Query: 210 DSIHAWTFP 218
D FP
Sbjct: 202 DLFSVLDFP 210
>gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo
sapiens]
Length = 398
Score = 35.4 bits (80), Expect = 0.096
Identities = 56/275 (20%), Positives = 111/275 (40%), Gaps = 38/275 (13%)
Query: 29 LKFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAV--PPFGLSLARSFAGVAVLST 86
L +I+ + TLV LT + L+ ++ L+ V PPF AV+++
Sbjct: 41 LVVVITSIAIAIATLVVVLTFTVVVLTSLVVVTTSLVMVITPPF-----------AVITS 89
Query: 87 LQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVLITTCGAALA 146
L G+ + VV CL LV +GV++ G V + V++ T A+
Sbjct: 90 L----------GVVITSLVVIITCLVLVITALGVVITSLGVV---VTSLVMVITPLVAVI 136
Query: 147 GAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAVSATPLLVICSF 206
P+G V L V++ + +V+ T + V+ +++ +++ F
Sbjct: 137 -------TPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTVIITSLF 189
Query: 207 -ASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTTLHCTYINSAVTTSFVGVVKS-- 263
T + TF + ++V + + I+ + + C V V V+ S
Sbjct: 190 VVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITSLFVVIIPLVVVITSLI 249
Query: 264 --IATITVGMVAFSDVEPTSLFIAGVVVNTLGSII 296
I ++ V ++A V P+ + + +V + S++
Sbjct: 250 VVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLV 284
>gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo
sapiens]
Length = 391
Score = 34.3 bits (77), Expect = 0.21
Identities = 55/273 (20%), Positives = 108/273 (39%), Gaps = 41/273 (15%)
Query: 29 LKFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAVPPFGLSLARSFAGVAVLSTLQ 88
L +I+ + TLV LTS + L ++ PPF AV+++L
Sbjct: 41 LVVVITSIAIAIATLVVVLTSLVVVTT-----SLVMVITPPF-----------AVITSL- 83
Query: 89 SSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVLITTCGAALAGA 148
G+ + VV CL LV +GV++ G V + V++ T A+
Sbjct: 84 ---------GVVITSLVVIITCLVLVITALGVVITSLGVV---VTSLVMVITPLVAVI-- 129
Query: 149 GDLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAVSATPLLVICSF-A 207
P+G V L V++ + +V+ T + V+ +++ +++ F
Sbjct: 130 -----TPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTVIITSLFVV 184
Query: 208 STDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTTLHCTYINSAVTTSFVGVVKS---- 263
T + TF + ++V + + I+ + + C V V V+ S
Sbjct: 185 ITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITSLFVVIIPLVVVITSLIVV 244
Query: 264 IATITVGMVAFSDVEPTSLFIAGVVVNTLGSII 296
I ++ V ++A V P+ + + +V + S++
Sbjct: 245 ITSLVVVLIAVIVVTPSLIVVISSLVVVIASLV 277
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 33.1 bits (74), Expect = 0.48
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 326 SGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVPLVAGSSEEG 380
SG PF PG G G + E G + QE++GS RG+P GS EG
Sbjct: 157 SGKGCPFGK---PGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGSGREG 208
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 33.1 bits (74), Expect = 0.48
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 326 SGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVPLVAGSSEEG 380
SG PF PG G G + E G + QE++GS RG+P GS EG
Sbjct: 157 SGKGCPFGK---PGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGSGREG 208
>gi|169203406 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 32.3 bits (72), Expect = 0.81
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 300 AKFMETRKQSNYEDLEAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPA 356
AK + +++SN E PR + + + PF E P E G+G G A PA
Sbjct: 22 AKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPA 78
>gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 32.3 bits (72), Expect = 0.81
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 300 AKFMETRKQSNYEDLEAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPA 356
AK + +++SN E PR + + + PF E P E G+G G A PA
Sbjct: 22 AKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPA 78
>gi|68989256 ras inhibitor RIN1 [Homo sapiens]
Length = 783
Score = 32.3 bits (72), Expect = 0.81
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 291 TLGSIIYCVAKFMETRKQSNYED----LEAQPRGEEAQLSGDQLPFV---------MEEL 337
T G ++Y A++ ET+ E+ EA+ RGEE GD V E
Sbjct: 695 TTGYLVYRRAEWPETQGAVTEEEGSGQSEARSRGEEQGCQGDGDAGVKASPRDIREQSET 754
Query: 338 PGEGGNGRSEGGEAAGGPAQESRQEVRGS 366
EGG G +A GPAQ E GS
Sbjct: 755 TAEGGQG-----QAQEGPAQPGEPEAEGS 778
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 32.3 bits (72), Expect = 0.81
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 326 SGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVP 371
+GD + + G GRS GG AAGGPA R VR P G P
Sbjct: 715 AGDPWEWNQNRNNAKEGPGRSRGGHAAGGPA--PRVLVRPPPPGCP 758
>gi|42822887 Duffy blood group antigen isoform b [Homo sapiens]
Length = 336
Score = 32.0 bits (71), Expect = 1.1
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 3 QLCRGRVLGISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELL--- 59
QLC G + +A+ +FS + +L L S + +L C+ +A LL
Sbjct: 91 QLCPGWPVLAQLAVGSALFSIVVPVLAPGLGSTRSSALCSLGYCVWYGSAFAQALLLGCH 150
Query: 60 ----RRLGLIAVPPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMY 104
RLG VP L L GVA L TL +L + GL +Y
Sbjct: 151 ASLGHRLGAGQVPGLTLGLTVGIWGVAALLTLPVTLASGASGGLCTLIY 199
>gi|171846251 Duffy blood group antigen isoform a [Homo sapiens]
Length = 338
Score = 32.0 bits (71), Expect = 1.1
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 3 QLCRGRVLGISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELL--- 59
QLC G + +A+ +FS + +L L S + +L C+ +A LL
Sbjct: 93 QLCPGWPVLAQLAVGSALFSIVVPVLAPGLGSTRSSALCSLGYCVWYGSAFAQALLLGCH 152
Query: 60 ----RRLGLIAVPPFGLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMY 104
RLG VP L L GVA L TL +L + GL +Y
Sbjct: 153 ASLGHRLGAGQVPGLTLGLTVGIWGVAALLTLPVTLASGASGGLCTLIY 201
>gi|5032213 solute carrier family 35, member B1 [Homo sapiens]
Length = 322
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 95 SLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVLITTCGAAL 145
+L+ ++ P V+ K C P+ ML+GV +LK P L VL+ G AL
Sbjct: 104 ALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAKYL-CVLLIVAGVAL 153
>gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 570
Score = 31.6 bits (70), Expect = 1.4
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 324 QLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESRQEV---RGSPRGVPLVAGSSEEG 380
++ G +L ME S GE A G + RQE R S VP V G+S EG
Sbjct: 123 RMGGGRLGAPMERHGRASATSVSSAGEQAAGDPEGRRQEPLRRRASSASVPAV-GASAEG 181
Query: 381 SRRSLKDAY 389
+RR +Y
Sbjct: 182 TRRDRLGSY 190
>gi|224282119 splicing factor, arginine/serine-rich 14 [Homo
sapiens]
Length = 1082
Score = 31.2 bits (69), Expect = 1.8
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 313 DLEAQPRGEEAQLSGDQLPFVM------------EELPGEGGNGRSEGGEAAGG-PAQES 359
+ E +P EA+L P VM EE P GG G+SEG A G P + +
Sbjct: 873 EFEDEPPPREAELES---PEVMPEEEDEDDEDGGEEAPAPGGAGKSEGSTPADGLPGEAA 929
Query: 360 RQEVRGSP 367
++ G+P
Sbjct: 930 EDDLAGAP 937
>gi|224282117 splicing factor, arginine/serine-rich 14 [Homo
sapiens]
Length = 1082
Score = 31.2 bits (69), Expect = 1.8
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 313 DLEAQPRGEEAQLSGDQLPFVM------------EELPGEGGNGRSEGGEAAGG-PAQES 359
+ E +P EA+L P VM EE P GG G+SEG A G P + +
Sbjct: 873 EFEDEPPPREAELES---PEVMPEEEDEDDEDGGEEAPAPGGAGKSEGSTPADGLPGEAA 929
Query: 360 RQEVRGSP 367
++ G+P
Sbjct: 930 EDDLAGAP 937
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 1.8
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 317 QPRGEEAQLSGDQLPFVMEELPGEGGN--------GRSEGGEAAGGPAQESRQEVRGSPR 368
+P+G Q Q P P +GGN G+ +G A GG +S + G P+
Sbjct: 96 KPQGPPPQGGKPQGP------PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQ 149
Query: 369 GVPLVAGSSEEG 380
G P G++ +G
Sbjct: 150 GPPQQEGNNPQG 161
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 30.8 bits (68), Expect = 2.4
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 314 LEAQPRGEEAQLSGDQLPFVMEE-LPGEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVPL 372
LE + G E + D P + E LP +G R AAG P QE +E +P L
Sbjct: 1007 LEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPPPQELVEEEPSAP--PTL 1064
Query: 373 VAGSSEEGS 381
+ +E+GS
Sbjct: 1065 LEEETEDGS 1073
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 30.8 bits (68), Expect = 2.4
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 339 GEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVPLVAGSSEEGSRR 383
G GG G GG GGP E QE+ SP P AG GS R
Sbjct: 39 GSGGGGGGGGGGGGGGPGHE--QELLASPS--PHHAGRGAAGSLR 79
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 338 PGEGGN--------GRSEGGEAAGGPAQESRQEVRGSPRGVPLVAGSSEEG 380
P +GGN G+ +G A GG +S + G P+G P G++ +G
Sbjct: 244 PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQG 294
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 30.4 bits (67), Expect = 3.1
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 338 PGEGGNGRSEGGEA---------AGGPAQESRQEVRGSPRGVPLVAGSSEE 379
PG+ G+GR+EG A G ++ RQEV SP L A EE
Sbjct: 21 PGDDGDGRAEGFSLGLPLSEQARAAGAREKERQEVSSSPDVSELTATKHEE 71
>gi|27262667 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 4.0
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 309 SNYEDLEAQPRGEEAQLSGDQLPFVMEELPG-EGGNGRSEGGEAAGGPAQESRQEVRGSP 367
SN L AQP+ + SG LP + EL G R E GGPA E
Sbjct: 414 SNPSTLSAQPQLSRSHSSGSVLP--LGELEGRRSTRDRRSPAEPEGGPASEGAARPLPRF 471
Query: 368 RGVPLVAGSSEEGSRRS 384
VPL E S S
Sbjct: 472 NSVPLTDTGHERQSEGS 488
>gi|27262661 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 4.0
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 309 SNYEDLEAQPRGEEAQLSGDQLPFVMEELPG-EGGNGRSEGGEAAGGPAQESRQEVRGSP 367
SN L AQP+ + SG LP + EL G R E GGPA E
Sbjct: 414 SNPSTLSAQPQLSRSHSSGSVLP--LGELEGRRSTRDRRSPAEPEGGPASEGAARPLPRF 471
Query: 368 RGVPLVAGSSEEGSRRS 384
VPL E S S
Sbjct: 472 NSVPLTDTGHERQSEGS 488
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 318 PRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVPLVAGSS 377
P+ E AQL+G E + G GG+ P +ESR E R PR GSS
Sbjct: 886 PKEETAQLTGP-------EAGRKPARGVGSGGQGPPPPRRESRTETRWGPR-----PGSS 933
Query: 378 EEG 380
G
Sbjct: 934 RRG 936
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 30.0 bits (66), Expect = 4.0
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 312 EDLEAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAG-GPAQESRQEVRGSPRGV 370
E+ E + GEE + G+ EE GEG G EG E G G +E E G G
Sbjct: 949 EEEEGEWEGEEEEGEGEG----EEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGE 1004
Query: 371 PLVAGSSE 378
G E
Sbjct: 1005 GEEEGEGE 1012
Score = 29.6 bits (65), Expect = 5.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 315 EAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVPLVA 374
+ + GEE + G++ EE GEG +G EG E G + +E G G
Sbjct: 920 KGEEEGEEGEGEGEE-----EEGEGEGEDGEGEGEEEEG---EWEGEEEEGEGEGEEEGE 971
Query: 375 GSSEEG 380
G EEG
Sbjct: 972 GEGEEG 977
Score = 28.9 bits (63), Expect = 9.0
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 315 EAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGEAAGGPAQESRQE 362
E + E+ + GDQ EE G G + EGGE GG +E + E
Sbjct: 779 ERAGKEEKGEEEGDQGEGEEEETEGRGEE-KEEGGEVEGGEVEEGKGE 825
Score = 28.9 bits (63), Expect = 9.0
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 312 EDLEAQPRGEEAQLSGDQLPFVMEELPGEG--------GNGRSEGGEAAGGPAQESRQEV 363
E+ E + GEE + G++ EE GEG G G E GE G +E E
Sbjct: 827 EEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEE-GEEGEGEGEEEEGEG 885
Query: 364 RGSPRGVPLVAGSSEEG 380
G G G EEG
Sbjct: 886 EGEEEGEG--EGEEEEG 900
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 29.6 bits (65), Expect = 5.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 321 EEAQLSGDQLPFVMEELP--GEGGNGRSEGGEAAGGPAQESRQEVRGSPRGVP 371
EE + +P + E P GEGG G EGG A GG S + G+P+ P
Sbjct: 144 EEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGG----SGEREGGAPQPPP 192
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 29.6 bits (65), Expect = 5.3
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 347 EGGEAAGGPAQESRQEVRGSPRGVPLVAGSSEEGSRRSLKDA 388
E G AGG QE R +R +VAG EGS RS + A
Sbjct: 236 EDGVGAGGGPQEPRFPLRRREARSAVVAGPRREGSARSRRAA 277
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 29.6 bits (65), Expect = 5.3
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 347 EGGEAAGGPAQESRQEVRGSPRGVPLVAGSSEEGSRRSLKDA 388
E G AGG QE R +R +VAG EGS RS + A
Sbjct: 228 EDGVGAGGGPQEPRFPLRRREARSAVVAGPRREGSARSRRAA 269
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,285,130
Number of Sequences: 37866
Number of extensions: 706653
Number of successful extensions: 3111
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3052
Number of HSP's gapped (non-prelim): 92
length of query: 416
length of database: 18,247,518
effective HSP length: 105
effective length of query: 311
effective length of database: 14,271,588
effective search space: 4438463868
effective search space used: 4438463868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.