Guide to the Human Genome
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Name: C18orf45 Sequence: fasta or formatted (296aa) NCBI GI: 109150412
Description:

hypothetical protein LOC85019

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         26           3
 C cysteine            4.1         12           2
 D aspartate           2.4          7           1
 E glutamate           1.7          5           1
 F phenylalanine       8.1         24           2
 G glycine             6.8         20           2
 H histidine           2.0          6           1
 I isoleucine          6.1         18           2
 K lysine              4.7         14           1
 L leucine            16.6         49           4
 M methionine          0.7          2           1
 N asparagine          2.4          7           1
 P proline             3.4         10           1
 Q glutamine           3.4         10           2
 R arginine            2.4          7           2
 S serine              9.5         28           3
 T threonine           4.7         14           2
 V valine              6.4         19           2
 W tryptophan          2.0          6           1
 Y tyrosine            4.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC85019 
SLC35D2               0.068   solute carrier family 35, member D2 
SLC35D3               0.023   solute carrier family 35, member D3 
TAS2R39               0.012   taste receptor, type 2, member 39 
DNAH10                0.005   dynein, axonemal, heavy chain 10 
SRD5A3                0.005   steroid 5 alpha-reductase 3 
TMC6                  0.005   transmembrane channel-like 6 
TMC6                  0.005   transmembrane channel-like 6 
CARD6                 0.005   caspase recruitment domain family, member 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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