Guide to the Human Genome
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Name: SLC35B1 Sequence: fasta or formatted (322aa) NCBI GI: 5032213
Description:

solute carrier family 35, member B1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         21           2
 C cysteine            2.2          7           1
 D aspartate           1.9          6           1
 E glutamate           2.8          9           2
 F phenylalanine       7.1         23           2
 G glycine             8.1         26           1
 H histidine           1.6          5           1
 I isoleucine          6.5         21           2
 K lysine              5.6         18           3
 L leucine            15.2         49           5
 M methionine          3.1         10           2
 N asparagine          2.5          8           1
 P proline             3.4         11           1
 Q glutamine           3.1         10           1
 R arginine            2.8          9           1
 S serine              6.8         22           4
 T threonine           7.1         23           3
 V valine              7.8         25           2
 W tryptophan          1.2          4           1
 Y tyrosine            4.7         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member B1 
SLC35B2               0.174   solute carrier family 35, member B2 
SLC35B3               0.146   solute carrier family 35, member B3 
SLC35B3               0.146   solute carrier family 35, member B3 
SLC35B3               0.146   solute carrier family 35, member B3 
SLC35B4               0.070   solute carrier family 35, member B4 
SLC35E1               0.028   solute carrier family 35, member E1 
SLC35C2               0.021   solute carrier family 35, member C2 isoform a 
SLC35C2               0.021   solute carrier family 35, member C2 isoform a 
SLC35C1               0.019   GDP-fucose transporter 1 isoform a 
SLC35C1               0.019   GDP-fucose transporter 1 isoform b 
SLC35C1               0.019   GDP-fucose transporter 1 isoform b 
LOC728661             0.016   similar to solute carrier family 35, member E2 [Hom...
SLC35E3               0.011   solute carrier family 35, member E2 
SLC35D3               0.011   solute carrier family 35, member D3 
SLC35A1               0.011   solute carrier family 35 (CMP-sialic acid transporter...
PIGZ                  0.010   phosphatidylinositol glycan anchor biosynthesis, cla...
CLCNKB                0.010   chloride channel Kb 
SOAT1                 0.008   sterol O-acyltransferase 1 
SLC35C2               0.008   solute carrier family 35, member C2 isoform b 
ATP11A                0.005   ATPase, class VI, type 11A isoform b 
ATP11A                0.005   ATPase, class VI, type 11A isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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