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Search of human proteins with 56711322
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56711322 ring finger protein 43 [Homo sapiens]
(783 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56711322 ring finger protein 43 [Homo sapiens] 1649 0.0
gi|150378447 zinc and ring finger 3 [Homo sapiens] 244 2e-64
gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens] 83 9e-16
gi|63025220 ring finger protein 215 [Homo sapiens] 80 6e-15
gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens] 74 4e-13
gi|14149702 ring finger protein 167 [Homo sapiens] 74 5e-13
gi|29788758 ring finger protein 130 [Homo sapiens] 69 2e-11
gi|58331204 ring finger protein 150 [Homo sapiens] 67 6e-11
gi|150170725 zinc and ring finger 4 [Homo sapiens] 65 2e-10
gi|34577087 ring finger protein 13 [Homo sapiens] 64 4e-10
gi|6005864 ring finger protein 13 [Homo sapiens] 64 4e-10
gi|29789407 ring finger protein 149 [Homo sapiens] 64 4e-10
gi|7662486 ring finger protein 44 [Homo sapiens] 63 1e-09
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 62 3e-09
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 62 3e-09
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 62 3e-09
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 62 3e-09
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 62 3e-09
gi|21040269 ring finger protein 133 [Homo sapiens] 61 5e-09
gi|5174653 ring finger protein 6 [Homo sapiens] 60 6e-09
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 60 6e-09
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 60 6e-09
gi|34305295 ring finger protein 6 [Homo sapiens] 60 6e-09
gi|34305293 ring finger protein 6 [Homo sapiens] 60 6e-09
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 59 2e-08
gi|37675277 ring finger protein 148 [Homo sapiens] 59 2e-08
gi|33859668 Rabring 7 [Homo sapiens] 58 3e-08
gi|57165361 ring finger protein 165 [Homo sapiens] 57 7e-08
gi|37622894 ring finger protein 126 [Homo sapiens] 57 9e-08
gi|38045931 ring finger protein 122 [Homo sapiens] 56 1e-07
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 1649 bits (4269), Expect = 0.0
Identities = 783/783 (100%), Positives = 783/783 (100%)
Query: 1 MSGGHQLQLAALWPWLLMATLQAGFGRTGLVLAAAVESERSAEQKAIIRVIPLKMDPTGK 60
MSGGHQLQLAALWPWLLMATLQAGFGRTGLVLAAAVESERSAEQKAIIRVIPLKMDPTGK
Sbjct: 1 MSGGHQLQLAALWPWLLMATLQAGFGRTGLVLAAAVESERSAEQKAIIRVIPLKMDPTGK 60
Query: 61 LNLTLEGVFAGVAEITPAEGKLMQSHPLYLCNASDDDNLEPGFISIVKLESPRRAPRPCL 120
LNLTLEGVFAGVAEITPAEGKLMQSHPLYLCNASDDDNLEPGFISIVKLESPRRAPRPCL
Sbjct: 61 LNLTLEGVFAGVAEITPAEGKLMQSHPLYLCNASDDDNLEPGFISIVKLESPRRAPRPCL 120
Query: 121 SLASKARMAGERGASAVLFDITEDRAAAEQLQQPLGLTWPVVLIWGNDAEKLMEFVYKNQ 180
SLASKARMAGERGASAVLFDITEDRAAAEQLQQPLGLTWPVVLIWGNDAEKLMEFVYKNQ
Sbjct: 121 SLASKARMAGERGASAVLFDITEDRAAAEQLQQPLGLTWPVVLIWGNDAEKLMEFVYKNQ 180
Query: 181 KAHVRIELKEPPAWPDYDVWILMTVVGTIFVIILASVLRIRCRPRHSRPDPLQQRTAWAI 240
KAHVRIELKEPPAWPDYDVWILMTVVGTIFVIILASVLRIRCRPRHSRPDPLQQRTAWAI
Sbjct: 181 KAHVRIELKEPPAWPDYDVWILMTVVGTIFVIILASVLRIRCRPRHSRPDPLQQRTAWAI 240
Query: 241 SQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVD 300
SQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVD
Sbjct: 241 SQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVD 300
Query: 301 PWLHQHRTCPLCMFNITEGDSFSQSLGPSRSYQEPGRRLHLIRQHPGHAHYHLPAAYLLG 360
PWLHQHRTCPLCMFNITEGDSFSQSLGPSRSYQEPGRRLHLIRQHPGHAHYHLPAAYLLG
Sbjct: 301 PWLHQHRTCPLCMFNITEGDSFSQSLGPSRSYQEPGRRLHLIRQHPGHAHYHLPAAYLLG 360
Query: 361 PSRSAVARPPRPGPFLPSQEPGMGPRHHRFPRAAHPRAPGEQQRLAGAQHPYAQGWGLSH 420
PSRSAVARPPRPGPFLPSQEPGMGPRHHRFPRAAHPRAPGEQQRLAGAQHPYAQGWGLSH
Sbjct: 361 PSRSAVARPPRPGPFLPSQEPGMGPRHHRFPRAAHPRAPGEQQRLAGAQHPYAQGWGLSH 420
Query: 421 LQSTSQHPAACPVPLRRARPPDSSGSGESYCTERSGYLADGPASDSSSGPCHGSSSDSVV 480
LQSTSQHPAACPVPLRRARPPDSSGSGESYCTERSGYLADGPASDSSSGPCHGSSSDSVV
Sbjct: 421 LQSTSQHPAACPVPLRRARPPDSSGSGESYCTERSGYLADGPASDSSSGPCHGSSSDSVV 480
Query: 481 NCTDISLQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSRPRSLDSVVPTG 540
NCTDISLQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSRPRSLDSVVPTG
Sbjct: 481 NCTDISLQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSRPRSLDSVVPTG 540
Query: 541 ETQVSSHVHYHRHRHHHYKKRFQWHGRKPGPETGVPQSRPPIPRTQPQPEPPSPDQQVTR 600
ETQVSSHVHYHRHRHHHYKKRFQWHGRKPGPETGVPQSRPPIPRTQPQPEPPSPDQQVTR
Sbjct: 541 ETQVSSHVHYHRHRHHHYKKRFQWHGRKPGPETGVPQSRPPIPRTQPQPEPPSPDQQVTR 600
Query: 601 SNSAAPSGRLSNPQCPRALPEPAPGPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGP 660
SNSAAPSGRLSNPQCPRALPEPAPGPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGP
Sbjct: 601 SNSAAPSGRLSNPQCPRALPEPAPGPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGP 660
Query: 661 SEPTPGSRPQDATVHPACQIFPHYTPSVAYPWSPEAHPLICGPPGLDKRLLPETPGPCYS 720
SEPTPGSRPQDATVHPACQIFPHYTPSVAYPWSPEAHPLICGPPGLDKRLLPETPGPCYS
Sbjct: 661 SEPTPGSRPQDATVHPACQIFPHYTPSVAYPWSPEAHPLICGPPGLDKRLLPETPGPCYS 720
Query: 721 NSQPVWLCLTPRQPLEPHPPGEGPSEWSSDTAEGRPCPYPHCQVLSAQPGSEEELEELCE 780
NSQPVWLCLTPRQPLEPHPPGEGPSEWSSDTAEGRPCPYPHCQVLSAQPGSEEELEELCE
Sbjct: 721 NSQPVWLCLTPRQPLEPHPPGEGPSEWSSDTAEGRPCPYPHCQVLSAQPGSEEELEELCE 780
Query: 781 QAV 783
QAV
Sbjct: 781 QAV 783
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 244 bits (623), Expect = 2e-64
Identities = 185/512 (36%), Positives = 255/512 (49%), Gaps = 97/512 (18%)
Query: 86 HPLYLCNASDDDNL-EPGFISIVKLESPRRAPRPCLSLASKARMAGERGASAVLFDITED 144
HPL LCN +D+++L E G++ +VKLE P P+PCL++ KA+ A +RGA+AV+FD++E+
Sbjct: 2 HPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSEN 61
Query: 145 RAAAEQLQQPLG--LTWPVVLIWGNDAEKLMEFVYKNQKAHVRIELKEPPAWPDY-DVWI 201
A +QL Q L PVV + G DA KLM V K + A RI+ + P +Y D+ I
Sbjct: 62 PEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHRPPRQPTEYFDMGI 121
Query: 202 LMTVVGTIFVIILASVLRIRCRPRHSRPDPLQQRTAWAISQLATRRYQASCRQARGEWPD 261
+ + ++ L +++I+ + R S+ + + + A+ ++ TR++ + + R
Sbjct: 122 FLAFFVVVSLVCLILLVKIKLKQRRSQ-NSMNRLAVQALEKMETRKFNSKSKGRR----- 175
Query: 262 SGS-------SCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMF 314
GS S SS CAICLE++ +G+ELRVI C H FHR CVDPWL QH TCP C
Sbjct: 176 EGSCGALDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRH 235
Query: 315 NITEGDSFSQSLGPSRSYQEPGR--RLHLIRQHPGHAH--YHLPAAYLLGPSRSAVARPP 370
NI E ++ S GR R+ L +PG H +PA P+R+++
Sbjct: 236 NIIEQKGNPSAVCVETSNLSRGRQQRVTLPVHYPGRVHRTNAIPAY----PTRTSMDSHG 291
Query: 371 RP---------------GPFLPSQEPGMGPRHHRFPRAAH----------PRAPGEQQRL 405
P P P+ P H AAH P P + +L
Sbjct: 292 NPVTLLTMDRHGEQSLYSPQTPAYIRSYPPLHLDHSLAAHRCGLEHRAYSPAHPFRRPKL 351
Query: 406 AGA---------------QHPYAQGWGLSHLQSTSQH-PAACPVPLRRARPPDSSGS--- 446
+G QH Y Q GLS+ + Q P+ P RA PP SGS
Sbjct: 352 SGRSFSKAACFSQYETMYQHYYFQ--GLSYPEQEGQSPPSLAPRGPARAFPPSGSGSLLF 409
Query: 447 -----------GESYCTER-----------SGYLADGPASD----SSSGPCHGSSSDSVV 480
ES T SGYLAD P SD SSSG CH SSSDSVV
Sbjct: 410 PTVVHVAPPSHLESGSTSSFSCYHGHRSVCSGYLADCPGSDSSSSSSSGQCHCSSSDSVV 469
Query: 481 NCTDISLQGVHGSSSTFCSSLSSDFDPLVYCS 512
+CT++S QGV+GS STF SSLSSD+DP +Y S
Sbjct: 470 DCTEVSNQGVYGSCSTFRSSLSSDYDPFIYRS 501
>gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens]
Length = 428
Score = 83.2 bits (204), Expect = 9e-16
Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 19/265 (7%)
Query: 63 LTLEGVFAGVAEITPAEGKLMQSH---PLYLCNASDDDNLEPGFISIVKLESPRRAPRPC 119
L+ EGV+ + + P G L+ L CN + + + S V++ R
Sbjct: 65 LSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGG 124
Query: 120 -LSLASKARMAGERGAS-AVLFDITEDRAAAEQLQQPLGLTWPVVLIWGNDAEKLMEFVY 177
+ A K +A ERGAS AV+F+ R + P + ++I K+++ +
Sbjct: 125 GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQ 184
Query: 178 KNQKAHVRIEL-KEPPAWPDYDVWILMTVVGTIFVIILASV----LRIRCRPRHSRPDPL 232
+ + + IE+ K+ W ++ + + V + F+I A+V R R++R
Sbjct: 185 RGIQVTMVIEVGKKHGPWVNH--YSIFFVSVSFFIITAATVGYFIFYSARRLRNARAQSR 242
Query: 233 QQRTAWAISQLATRRYQA-SCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCL 291
+QR A ++ A R Q + +Q E G SC A+C+E + +R+++C
Sbjct: 243 KQRQLKADAKKAIGRLQLRTLKQGDKEIGPDGDSC------AVCIELYKPNDLVRILTCN 296
Query: 292 HEFHRNCVDPWLHQHRTCPLCMFNI 316
H FH+ CVDPWL +HRTCP+C +I
Sbjct: 297 HIFHKTCVDPWLLEHRTCPMCKCDI 321
>gi|63025220 ring finger protein 215 [Homo sapiens]
Length = 377
Score = 80.5 bits (197), Expect = 6e-15
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 7/87 (8%)
Query: 230 DPLQQRTAWAISQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVIS 289
D ++R ++ L TRR + S R A+G PD G A CA+CL+ F Q LRV+
Sbjct: 290 DLFKRRVVRRLASLKTRRCRLS-RAAQG-LPDPG-----AETCAVCLDYFCNKQWLRVLP 342
Query: 290 CLHEFHRNCVDPWLHQHRTCPLCMFNI 316
C HEFHR+CVDPWL +TCPLC FN+
Sbjct: 343 CKHEFHRDCVDPWLMLQQTCPLCKFNV 369
>gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens]
Length = 402
Score = 74.3 bits (181), Expect = 4e-13
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
Query: 121 SLASKARMAGERGASAVLFDITEDRAAAEQLQQPLGLTWPVVLIWGN-DAEKLMEFVYKN 179
+ + K + AG R A AV+ + G V ++ GN K+++ + +
Sbjct: 101 TFSEKIQTAGRRNADAVVIYNAPETGNQTIQMANFGAVDIVAIMIGNLKGTKILQSIQRG 160
Query: 180 QKAHVRIEL-KEPPAWPDYDVWILMTVVGTIFVIILASV----LRIRCRPRHSRPDPLQQ 234
+ + IE+ K+ W ++ + + V + F+I A+V R R++R +Q
Sbjct: 161 IQVTMVIEVGKKHGPWVNH--YSIFFVSVSFFIITAATVGYFIFYSARRLRNARAQSRKQ 218
Query: 235 RTAWAISQLATRRYQA-SCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHE 293
R A ++ A R Q + +Q E G SC A+C+E + +R+++C H
Sbjct: 219 RQLKADAKKAIGRLQLRTLKQGDKEIGPDGDSC------AVCIELYKPNDLVRILTCNHI 272
Query: 294 FHRNCVDPWLHQHRTCPLCMFNI 316
FH+ CVDPWL +HRTCP+C +I
Sbjct: 273 FHKTCVDPWLLEHRTCPMCKCDI 295
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 73.9 bits (180), Expect = 5e-13
Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 148 AEQLQQPLGLTWPVVLIWGNDAEKLME-FVYKNQKAHVRIELKEPPAWPDYDVWILMTVV 206
+E++QQ + + P V I +E L FVY+ R+ L +P I T +
Sbjct: 126 SEEIQQQIWI--PSVFIGERSSEYLRALFVYEKG---ARVLLVPDNTFPLGYYLIPFTGI 180
Query: 207 GTIFVIILASVLRIRCRPRHSRPDPLQQRTAWAISQLATRRYQASCRQARGEWPDSGSSC 266
+ V+ + +V+ RC +H + + T + Q+ T YQ +G+ D
Sbjct: 181 VGLLVLAMGAVMIARCI-QHRKRLQRNRLTKEQLKQIPTHDYQ------KGDQYD----- 228
Query: 267 SSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHR-TCPLCMFNITEG 319
VCAICL+E+ +G +LRV+ C H +H CVDPWL Q R TCP+C + G
Sbjct: 229 ----VCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRG 278
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 68.9 bits (167), Expect = 2e-11
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 200 WILMTVVGTIFVII--LASVLRIRCRPRHSRPDPLQQRTAWAISQLATRRYQASCRQARG 257
+I++ ++ + ++I + + R R+ R L AIS+L TR + ++
Sbjct: 202 FIVLMIISSAWLIFYFIQKIRYTNARDRNQRR--LGDAAKKAISKLTTRTVKKGDKETDP 259
Query: 258 EWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNI 316
++ CA+C+E + + +R++ C H FH++CVDPWL +H TCP+C NI
Sbjct: 260 DFDH----------CAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 67.0 bits (162), Expect = 6e-11
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 239 AISQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNC 298
AIS+L R + ++ ++ + CA+C+E + +R++ C H FH++C
Sbjct: 255 AISKLQIRTIKKGDKETESDFDN----------CAVCIEGYKPNDVVRILPCRHLFHKSC 304
Query: 299 VDPWLHQHRTCPLCMFNI 316
VDPWL HRTCP+C NI
Sbjct: 305 VDPWLLDHRTCPMCKMNI 322
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 65.1 bits (157), Expect = 2e-10
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 249 QASCRQARGEWPDSGSSCSSAPV---------CAICLEEFSEGQELRVISCLHEFHRNCV 299
QA C R P S+C A V CAICL+E+ EG +L+++ C H +H C+
Sbjct: 280 QACCSHRR---PVKTSTCQKAQVRTFTWHNDLCAICLDEYEEGDQLKILPCSHTYHCKCI 336
Query: 300 DPWLHQ--HRTCPLCMFNI-TEGDSFSQSL------GPSRSYQEP----------GRRLH 340
DPW Q R+CP+C ++ DSF + PS P RRL
Sbjct: 337 DPWFSQAPRRSCPVCKQSVAATEDSFDSTTYSFRDEDPSLPGHRPPIWAIQVQLRSRRLE 396
Query: 341 LIRQHPGHAH 350
L+ + H H
Sbjct: 397 LLGRASPHCH 406
>gi|34577087 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 64.3 bits (155), Expect = 4e-10
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 271 VCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQ-HRTCPLCMFNI--TEGDSFSQS 325
VCAICL+E+ +G +LR++ C H +H CVDPWL + +TCP+C + ++GDS S +
Sbjct: 239 VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDT 296
>gi|6005864 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 64.3 bits (155), Expect = 4e-10
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 271 VCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQ-HRTCPLCMFNI--TEGDSFSQS 325
VCAICL+E+ +G +LR++ C H +H CVDPWL + +TCP+C + ++GDS S +
Sbjct: 239 VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDT 296
>gi|29789407 ring finger protein 149 [Homo sapiens]
Length = 400
Score = 64.3 bits (155), Expect = 4e-10
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNI 316
CA+C+E F +R++ C H FHR C+DPWL HRTCP+C ++
Sbjct: 269 CAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDV 313
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 62.8 bits (151), Expect = 1e-09
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 260 PDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITE 318
PDS S +C +C +F Q LRV+ C HEFH CVD WL +RTCP+C + +E
Sbjct: 370 PDSHQS--EQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASE 426
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 61.6 bits (148), Expect = 3e-09
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 267 SSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITE 318
S +C +C+ +F Q LRV+ C HEFH CVD WL +RTCP+C + +E
Sbjct: 375 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 426
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 61.6 bits (148), Expect = 3e-09
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 267 SSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITE 318
S +C +C+ +F Q LRV+ C HEFH CVD WL +RTCP+C + +E
Sbjct: 375 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 426
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 61.6 bits (148), Expect = 3e-09
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 267 SSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITE 318
S +C +C+ +F Q LRV+ C HEFH CVD WL +RTCP+C + +E
Sbjct: 408 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 459
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 61.6 bits (148), Expect = 3e-09
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 267 SSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITE 318
S +C +C+ +F Q LRV+ C HEFH CVD WL +RTCP+C + +E
Sbjct: 375 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 426
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 61.6 bits (148), Expect = 3e-09
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 267 SSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITE 318
S +C +C+ +F Q LRV+ C HEFH CVD WL +RTCP+C + +E
Sbjct: 458 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 509
>gi|21040269 ring finger protein 133 [Homo sapiens]
Length = 376
Score = 60.8 bits (146), Expect = 5e-09
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNI 316
C IC E + +R+++C H FH+NC+DPW+ H TCP+C +I
Sbjct: 256 CVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICKCDI 300
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 60.5 bits (145), Expect = 6e-09
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 230 DPLQQRTAWAISQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVIS 289
D ++ T I L+TR Y+ + +C++C+ ++ G +LR +
Sbjct: 601 DRIRGLTKEQIDNLSTRHYE-----------HNSIDSELGKICSVCISDYVTGNKLRQLP 649
Query: 290 CLHEFHRNCVDPWLHQHRTCPLC 312
C+HEFH +C+D WL ++ TCP+C
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPIC 672
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 60.5 bits (145), Expect = 6e-09
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
C++C+ E++EG +LR + C HE+H +C+D WL ++ TCP+C
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPIC 610
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 60.5 bits (145), Expect = 6e-09
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
C++C+ E++EG +LR + C HE+H +C+D WL ++ TCP+C
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPIC 610
>gi|34305295 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 60.5 bits (145), Expect = 6e-09
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 230 DPLQQRTAWAISQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVIS 289
D ++ T I L+TR Y+ + +C++C+ ++ G +LR +
Sbjct: 601 DRIRGLTKEQIDNLSTRHYE-----------HNSIDSELGKICSVCISDYVTGNKLRQLP 649
Query: 290 CLHEFHRNCVDPWLHQHRTCPLC 312
C+HEFH +C+D WL ++ TCP+C
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPIC 672
>gi|34305293 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 60.5 bits (145), Expect = 6e-09
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 230 DPLQQRTAWAISQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVIS 289
D ++ T I L+TR Y+ + +C++C+ ++ G +LR +
Sbjct: 601 DRIRGLTKEQIDNLSTRHYE-----------HNSIDSELGKICSVCISDYVTGNKLRQLP 649
Query: 290 CLHEFHRNCVDPWLHQHRTCPLC 312
C+HEFH +C+D WL ++ TCP+C
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPIC 672
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 58.9 bits (141), Expect = 2e-08
Identities = 87/396 (21%), Positives = 129/396 (32%), Gaps = 23/396 (5%)
Query: 361 PSRSAVARPPRPGPFLPSQEPGMGPRHHRFPRAAHPRAPGEQQRLAGAQHPYAQGWGLSH 420
P+ + P P++PS M P + A PR+PG + + P + + +
Sbjct: 1567 PTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTS 1626
Query: 421 LQSTSQHPAACPV-PLRRARPPDSSGSGESYCTERSGYLADGPASDSSSGPCHGSSSDSV 479
+ P P P P S + SY Y P S S + P + +S S
Sbjct: 1627 PSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSY 1685
Query: 480 VNCTDISLQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSRPRSLDSVVPT 539
+ + +S S S + P SP P P+ S + S PT
Sbjct: 1686 SPTSP-----SYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1737
Query: 540 GETQVSSHVHYHRHRHHHYKKRFQWHGRKPGPETGVPQSRPPIPR---TQPQPEPPSPDQ 596
+ + +Y ++ + P P P P T P P SP
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797
Query: 597 QVTRSNSAAPSGRLSNPQCPRALPEPAPGPVDASSICPSTSSLFNLQKSSLSARHPQRKR 656
T S S +PS PQ P P +P +S TS + S S P+
Sbjct: 1798 SPT-SPSYSPSSPRYTPQSPTYTPS-SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTP 1855
Query: 657 RGGPSEPT-PGSRPQDATVHPACQIFPHYTPSVAYPWSPEAHPLICGPPGLDKRLLPETP 715
PT P P P + TP + P SP P + P +P
Sbjct: 1856 TSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYS-PTSPTYSPTSPVYTPTSPKYSPTSP 1914
Query: 716 -----GPCYSNSQPVWLCLTPR-QPLEPHPPGEGPS 745
P YS + P + +P+ P PG P+
Sbjct: 1915 TYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950
>gi|37675277 ring finger protein 148 [Homo sapiens]
Length = 305
Score = 58.9 bits (141), Expect = 2e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNI 316
C +C + + +R+++C H FH+ C+DPWL HRTCP+C +I
Sbjct: 258 CVVCFDTYKPQDVVRILTCKHFFHKACIDPWLLAHRTCPMCKCDI 302
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 58.2 bits (139), Expect = 3e-08
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQS 325
C +C E+++ +E+R + C H FH +C+ PWL H TCP+C ++ DS QS
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQS 281
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 57.0 bits (136), Expect = 7e-08
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 261 DSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNI 316
D G + C ICL +G+++R + C+H FH+ CVD WL + CP+C +I
Sbjct: 283 DEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>gi|37622894 ring finger protein 126 [Homo sapiens]
Length = 311
Score = 56.6 bits (135), Expect = 9e-08
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 254 QARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCM 313
QA P + S C +C ++++ G+ +R + C H FH C+ PWL QH +CP+C
Sbjct: 211 QALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 270
Query: 314 FNIT-----------EGDSFSQSLGPSRS 331
++T G SFS S S S
Sbjct: 271 KSLTGQNTATNPPGLTGVSFSSSSSSSSS 299
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 56.2 bits (134), Expect = 1e-07
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQSLG 327
CA+CLE+F EL V+ C H FHR C+ WL CP+C I +Q++G
Sbjct: 93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIASPSEATQNIG 148
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,149,092
Number of Sequences: 37866
Number of extensions: 2605968
Number of successful extensions: 19815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 978
Number of HSP's that attempted gapping in prelim test: 14130
Number of HSP's gapped (non-prelim): 5044
length of query: 783
length of database: 18,247,518
effective HSP length: 110
effective length of query: 673
effective length of database: 14,082,258
effective search space: 9477359634
effective search space used: 9477359634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.