Guide to the Human Genome
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Name: RNF6 Sequence: fasta or formatted (685aa) NCBI GI: 34305295
Description:

ring finger protein 6

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt mRNA [685aa] ring finger protein 6
alt mRNA [685aa] ring finger protein 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         24           2
 C cysteine            1.0          7           1
 D aspartate           4.7         32           4
 E glutamate           8.5         58           2
 F phenylalanine       2.3         16           2
 G glycine             7.2         49           2
 H histidine           3.6         25           2
 I isoleucine          4.5         31           1
 K lysine              0.6          4           1
 L leucine             7.4         51           2
 M methionine          1.0          7           1
 N asparagine          8.0         55           2
 P proline             3.6         25           1
 Q glutamine           5.5         38           2
 R arginine           13.6         93           3
 S serine             11.4         78           3
 T threonine           7.3         50           2
 V valine              3.9         27           1
 W tryptophan          0.7          5           1
 Y tyrosine            1.5         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 6 
RNF6                  1.000   ring finger protein 6 
RNF6                  1.000   ring finger protein 6 
RLIM                  0.297   ring finger protein, LIM domain interacting 
RLIM                  0.297   ring finger protein, LIM domain interacting 
RNF44                 0.038   ring finger protein 44 
RNF38                 0.037   ring finger protein 38 isoform 2 
RNF38                 0.037   ring finger protein 38 isoform 2 
RNF38                 0.037   ring finger protein 38 isoform 3 
RNF38                 0.037   ring finger protein 38 isoform 2 
RNF38                 0.037   ring finger protein 38 isoform 1 
RNF167                0.035   ring finger protein 167 
RNF126                0.032   ring finger protein 126 
RNF130                0.030   ring finger protein 130 
RNF11                 0.028   ring finger protein 11 
RNF13                 0.028   ring finger protein 13 
RNF13                 0.028   ring finger protein 13 
RNF115                0.028   Rabring 7 
LOC100290625          0.027   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.027   PREDICTED: hypothetical protein XP_002342853 
ZNRF3                 0.027   zinc and ring finger 3 
RNF43                 0.026   ring finger protein 43 
RNF122                0.025   ring finger protein 122 
SRRM2                 0.025   splicing coactivator subunit SRm300 
PJA1                  0.025   praja 1 isoform c 
PJA1                  0.025   praja 1 isoform b 
PJA1                  0.025   praja 1 isoform a 
RNF165                0.024   ring finger protein 165 
RNF111                0.024   ring finger protein 111 
RNF150                0.024   ring finger protein 150 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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