Guide to the Human Genome
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Name: RNF148 Sequence: fasta or formatted (305aa) NCBI GI: 37675277
Description:

ring finger protein 148

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         16           2
 C cysteine            3.3         10           1
 D aspartate           3.9         12           1
 E glutamate           4.6         14           2
 F phenylalanine       4.9         15           2
 G glycine             6.2         19           2
 H histidine           3.9         12           1
 I isoleucine          7.2         22           2
 K lysine              5.2         16           2
 L leucine             9.5         29           3
 M methionine          2.6          8           1
 N asparagine          4.9         15           1
 P proline             3.9         12           1
 Q glutamine           3.6         11           1
 R arginine            4.6         14           3
 S serine              7.2         22           2
 T threonine           6.6         20           1
 V valine              7.9         24           2
 W tryptophan          2.0          6           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 148 
RNF133                0.542   ring finger protein 133 
RNF128                0.446   ring finger protein 128 isoform 1 
RNF128                0.395   ring finger protein 128 isoform 2 
RNF149                0.307   ring finger protein 149 
RNF150                0.299   ring finger protein 150 
RNF130                0.263   ring finger protein 130 
RNF13                 0.094   ring finger protein 13 
RNF13                 0.094   ring finger protein 13 
ZNRF4                 0.078   zinc and ring finger 4 
RNF167                0.073   ring finger protein 167 
RNF215                0.066   ring finger protein 215 
RNF44                 0.064   ring finger protein 44 
ZNRF3                 0.063   zinc and ring finger 3 
RNF24                 0.063   ring finger protein 24 isoform 2 
RNF24                 0.063   ring finger protein 24 isoform 1 
RNF24                 0.063   ring finger protein 24 isoform 1 
RNF38                 0.058   ring finger protein 38 isoform 2 
RNF38                 0.058   ring finger protein 38 isoform 2 
RNF38                 0.058   ring finger protein 38 isoform 3 
RNF38                 0.058   ring finger protein 38 isoform 2 
RNF38                 0.058   ring finger protein 38 isoform 1 
RNF43                 0.056   ring finger protein 43 
RNF115                0.056   Rabring 7 
RNF111                0.056   ring finger protein 111 
LOC100290625          0.053   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.053   PREDICTED: hypothetical protein XP_002342853 
AMFR                  0.051   autocrine motility factor receptor 
RNF165                0.051   ring finger protein 165 
DZIP3                 0.050   DAZ interacting protein 3, zinc finger 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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