Guide to the Human Genome
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Name: RNF115 Sequence: fasta or formatted (304aa) NCBI GI: 33859668
Description:

Rabring 7

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         21           2
 C cysteine            3.3         10           1
 D aspartate           6.2         19           2
 E glutamate           6.6         20           3
 F phenylalanine       6.2         19           2
 G glycine             7.9         24           4
 H histidine           4.6         14           1
 I isoleucine          3.3         10           1
 K lysine              2.0          6           1
 L leucine             6.9         21           2
 M methionine          1.3          4           1
 N asparagine          3.3         10           1
 P proline             7.2         22           3
 Q glutamine           4.3         13           1
 R arginine            6.2         19           2
 S serine              9.9         30           3
 T threonine           6.6         20           4
 V valine              3.9         12           1
 W tryptophan          2.0          6           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rabring 7 
RNF126                0.365   ring finger protein 126 
RNF181                0.090   ring finger protein 181 
PJA1                  0.084   praja 1 isoform c 
PJA1                  0.084   praja 1 isoform b 
PJA1                  0.084   praja 1 isoform a 
PJA2                  0.080   praja 2, RING-H2 motif containing 
RNF128                0.064   ring finger protein 128 isoform 1 
RNF128                0.064   ring finger protein 128 isoform 2 
RNF130                0.063   ring finger protein 130 
RNF6                  0.061   ring finger protein 6 
RNF6                  0.061   ring finger protein 6 
RNF6                  0.061   ring finger protein 6 
RNF149                0.056   ring finger protein 149 
ZNRF3                 0.056   zinc and ring finger 3 
RNF139                0.056   ring finger protein 139 
RNF150                0.056   ring finger protein 150 
RNF122                0.055   ring finger protein 122 
RNF148                0.055   ring finger protein 148 
RNF44                 0.055   ring finger protein 44 
RNF43                 0.053   ring finger protein 43 
RLIM                  0.053   ring finger protein, LIM domain interacting 
RLIM                  0.053   ring finger protein, LIM domain interacting 
RNF167                0.053   ring finger protein 167 
RNF38                 0.051   ring finger protein 38 isoform 2 
RNF38                 0.051   ring finger protein 38 isoform 2 
RNF38                 0.051   ring finger protein 38 isoform 3 
RNF38                 0.051   ring finger protein 38 isoform 2 
RNF38                 0.051   ring finger protein 38 isoform 1 
RNF133                0.051   ring finger protein 133 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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