Guide to the Human Genome
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Name: RNF165 Sequence: fasta or formatted (346aa) NCBI GI: 57165361
Description:

ring finger protein 165

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         19           1
 C cysteine            2.0          7           1
 D aspartate           4.6         16           1
 E glutamate           4.6         16           2
 F phenylalanine       4.0         14           1
 G glycine             5.2         18           1
 H histidine           7.5         26           2
 I isoleucine          1.7          6           1
 K lysine              2.6          9           2
 L leucine            11.3         39           2
 M methionine          2.0          7           1
 N asparagine          1.7          6           1
 P proline             9.2         32           2
 Q glutamine          10.1         35           3
 R arginine            7.2         25           2
 S serine              6.9         24           3
 T threonine           4.3         15           1
 V valine              6.1         21           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 165 
RNF111                0.332   ring finger protein 111 
RNF44                 0.067   ring finger protein 44 
ZNRF3                 0.056   zinc and ring finger 3 
RNF38                 0.053   ring finger protein 38 isoform 2 
RNF38                 0.053   ring finger protein 38 isoform 2 
RNF38                 0.053   ring finger protein 38 isoform 3 
RNF38                 0.053   ring finger protein 38 isoform 2 
RNF38                 0.053   ring finger protein 38 isoform 1 
RNF150                0.053   ring finger protein 150 
RNF128                0.050   ring finger protein 128 isoform 1 
RNF128                0.050   ring finger protein 128 isoform 2 
RNF13                 0.050   ring finger protein 13 
RNF13                 0.050   ring finger protein 13 
RNF167                0.050   ring finger protein 167 
RNF149                0.050   ring finger protein 149 
RNF130                0.050   ring finger protein 130 
RLIM                  0.049   ring finger protein, LIM domain interacting 
RLIM                  0.049   ring finger protein, LIM domain interacting 
RNF6                  0.047   ring finger protein 6 
RNF6                  0.047   ring finger protein 6 
RNF6                  0.047   ring finger protein 6 
RNF181                0.046   ring finger protein 181 
RNF43                 0.046   ring finger protein 43 
LOC100290625          0.044   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.044   PREDICTED: hypothetical protein XP_002342853 
RNF148                0.044   ring finger protein 148 
RNF11                 0.043   ring finger protein 11 
RNF133                0.043   ring finger protein 133 
ZNRF2                 0.040   zinc finger/RING finger 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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