Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RNF126 Sequence: fasta or formatted (311aa) NCBI GI: 37622894
Description:

ring finger protein 126

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         19           1
 C cysteine            3.5         11           2
 D aspartate           5.1         16           2
 E glutamate           7.1         22           2
 F phenylalanine       3.5         11           1
 G glycine             8.0         25           1
 H histidine           3.9         12           1
 I isoleucine          4.5         14           2
 K lysine              1.3          4           1
 L leucine             6.8         21           2
 M methionine          0.6          2           1
 N asparagine          3.9         12           1
 P proline            10.9         34           3
 Q glutamine           4.5         14           2
 R arginine            6.4         20           2
 S serine              9.6         30          11
 T threonine           6.8         21           2
 V valine              4.5         14           1
 W tryptophan          1.0          3           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 126 
RNF115                0.358   Rabring 7 
PJA2                  0.090   praja 2, RING-H2 motif containing 
PJA1                  0.090   praja 1 isoform c 
PJA1                  0.090   praja 1 isoform b 
PJA1                  0.090   praja 1 isoform a 
RNF181                0.071   ring finger protein 181 
RNF6                  0.069   ring finger protein 6 
RNF6                  0.069   ring finger protein 6 
RNF6                  0.069   ring finger protein 6 
RNF38                 0.058   ring finger protein 38 isoform 2 
RNF38                 0.058   ring finger protein 38 isoform 2 
RNF38                 0.058   ring finger protein 38 isoform 3 
RNF38                 0.058   ring finger protein 38 isoform 2 
RNF38                 0.058   ring finger protein 38 isoform 1 
ZNRF3                 0.055   zinc and ring finger 3 
RLIM                  0.054   ring finger protein, LIM domain interacting 
RLIM                  0.054   ring finger protein, LIM domain interacting 
SYVN1                 0.054   synoviolin 1 isoform b 
SYVN1                 0.054   synoviolin 1 isoform a 
RNF130                0.054   ring finger protein 130 
AMFR                  0.052   autocrine motility factor receptor 
RNF128                0.052   ring finger protein 128 isoform 1 
RNF128                0.052   ring finger protein 128 isoform 2 
RNF150                0.050   ring finger protein 150 
RNF44                 0.050   ring finger protein 44 
ZNRF4                 0.050   zinc and ring finger 4 
RNF43                 0.050   ring finger protein 43 
RNF167                0.047   ring finger protein 167 
RNF122                0.047   ring finger protein 122 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press