Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RNF122 Sequence: fasta or formatted (155aa) NCBI GI: 38045931
Description:

ring finger protein 122

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          6           1
 C cysteine            8.4         13           2
 D aspartate           3.2          5           1
 E glutamate           4.5          7           1
 F phenylalanine       6.5         10           1
 G glycine             7.1         11           1
 H histidine           1.9          3           1
 I isoleucine          5.8          9           1
 K lysine              7.1         11           2
 L leucine            11.6         18           2
 M methionine          3.2          5           1
 N asparagine          3.9          6           1
 P proline             5.2          8           2
 Q glutamine           5.2          8           1
 R arginine            2.6          4           1
 S serine              5.8          9           1
 T threonine           2.6          4           1
 V valine              7.1         11           2
 W tryptophan          1.3          2           1
 Y tyrosine            3.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 122 
RNF24                 0.461   ring finger protein 24 isoform 2 
RNF24                 0.461   ring finger protein 24 isoform 1 
RNF24                 0.461   ring finger protein 24 isoform 1 
RNF130                0.136   ring finger protein 130 
RNF149                0.127   ring finger protein 149 
RNF167                0.120   ring finger protein 167 
RNF13                 0.114   ring finger protein 13 
RNF13                 0.114   ring finger protein 13 
RNF128                0.114   ring finger protein 128 isoform 1 
RNF128                0.114   ring finger protein 128 isoform 2 
RNF6                  0.110   ring finger protein 6 
RNF115                0.110   Rabring 7 
RNF6                  0.110   ring finger protein 6 
RNF6                  0.110   ring finger protein 6 
RNF215                0.107   ring finger protein 215 
RNF44                 0.104   ring finger protein 44 
RNF150                0.104   ring finger protein 150 
RNF38                 0.101   ring finger protein 38 isoform 2 
RNF38                 0.101   ring finger protein 38 isoform 2 
RNF38                 0.101   ring finger protein 38 isoform 3 
RNF38                 0.101   ring finger protein 38 isoform 2 
RNF38                 0.101   ring finger protein 38 isoform 1 
RNF43                 0.101   ring finger protein 43 
RNF126                0.097   ring finger protein 126 
ZNRF4                 0.097   zinc and ring finger 4 
RNF148                0.097   ring finger protein 148 
ZNRF3                 0.094   zinc and ring finger 3 
RNF145                0.094   ring finger protein 145 
RNF139                0.091   ring finger protein 139 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press