Guide to the Human Genome
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Name: TAGLN3 Sequence: fasta or formatted (199aa) NCBI GI: 56549135
Description:

transgelin 3

Referenced in:

Cytoskeleton

Other entries for this name:
alt mRNA [199aa] transgelin 3
alt mRNA [199aa] transgelin 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         14           2
 C cysteine            1.5          3           1
 D aspartate           5.0         10           2
 E glutamate           7.0         14           2
 F phenylalanine       3.0          6           1
 G glycine             9.0         18           1
 H histidine           1.5          3           1
 I isoleucine          5.5         11           2
 K lysine              6.5         13           1
 L leucine             7.0         14           1
 M methionine          5.0         10           1
 N asparagine          3.0          6           1
 P proline             5.0         10           3
 Q glutamine           9.0         18           2
 R arginine            5.5         11           2
 S serine              5.5         11           1
 T threonine           4.0          8           2
 V valine              4.5          9           1
 W tryptophan          2.0          4           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transgelin 3 
TAGLN3                1.000   transgelin 3 
TAGLN3                1.000   transgelin 3 
TAGLN2                0.717   transgelin 2 
TAGLN                 0.668   transgelin 
TAGLN                 0.668   transgelin 
CNN3                  0.312   calponin 3 
CNN1                  0.304   calponin 1, basic, smooth muscle 
CNN2                  0.283   calponin 2 isoform a 
CNN2                  0.231   calponin 2 isoform b 
LMO7                  0.044   LIM domain only 7 isoform 1 
VAV1                  0.042   vav 1 guanine nucleotide exchange factor 
LRCH1                 0.042   leucine-rich repeats and calponin homology (CH) doma...
VAV3                  0.042   vav 3 guanine nucleotide exchange factor isoform 1 ...
ARHGEF6               0.036   Rac/Cdc42 guanine nucleotide exchange factor 6 [Homo...
VAV2                  0.034   vav 2 guanine nucleotide exchange factor isoform 1 ...
VAV2                  0.034   vav 2 guanine nucleotide exchange factor isoform 2 [...
LRCH2                 0.029   leucine-rich repeats and calponin homology (CH) dom...
LIMCH1                0.023   LIM and calponin homology domains 1 isoform c [Homo...
LIMCH1                0.023   LIM and calponin homology domains 1 isoform b [Homo...
LIMCH1                0.023   LIM and calponin homology domains 1 isoform a [Homo...
ARHGEF7               0.018   PAK-interacting exchange factor beta isoform b [Homo...
PLS1                  0.018   plastin 1 
PLS1                  0.018   plastin 1 
IQGAP3                0.016   IQ motif containing GTPase activating protein 3 [Hom...
LCP1                  0.013   L-plastin 
PLS3                  0.013   plastin 3 
PLS3                  0.013   plastin 3 
LOC100291533          0.005   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.005   PREDICTED: hypothetical protein XP_002342946 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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