Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PLS1 Sequence: fasta or formatted (629aa) NCBI GI: 223718250
Description:

plastin 1

Referenced in:

Cytoskeleton

Other entries for this name:
alt mRNA [629aa] plastin 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         42           1
 C cysteine            1.1          7           1
 D aspartate           5.9         37           2
 E glutamate           7.9         50           3
 F phenylalanine       3.0         19           1
 G glycine             5.6         35           2
 H histidine           1.4          9           1
 I isoleucine          7.9         50           3
 K lysine              8.1         51           3
 L leucine            11.9         75           3
 M methionine          2.4         15           1
 N asparagine          8.4         53           3
 P proline             3.8         24           2
 Q glutamine           2.2         14           1
 R arginine            3.2         20           2
 S serine              7.3         46           2
 T threonine           4.0         25           3
 V valine              5.4         34           2
 W tryptophan          1.3          8           1
 Y tyrosine            2.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plastin 1 
PLS1                  1.000   plastin 1 
PLS3                  0.785   plastin 3 
PLS3                  0.785   plastin 3 
LCP1                  0.767   L-plastin 
DST                   0.038   dystonin isoform 4 
DST                   0.038   dystonin isoform 3 
DST                   0.038   dystonin isoform 2 
DST                   0.038   dystonin isoform 1 
PLEC1                 0.036   plectin 1 isoform 11 
PLEC1                 0.034   plectin 1 isoform 2 
PLEC1                 0.033   plectin 1 isoform 8 
PLEC1                 0.033   plectin 1 isoform 10 
PLEC1                 0.033   plectin 1 isoform 7 
PLEC1                 0.033   plectin 1 isoform 6 
PLEC1                 0.033   plectin 1 isoform 3 
PLEC1                 0.033   plectin 1 isoform 1 
LOC652460             0.030   PREDICTED: similar to plectin 1, partial 
MACF1                 0.029   microfilament and actin filament cross-linker protei...
FLNA                  0.029   filamin A, alpha isoform 2 
FLNA                  0.029   filamin A, alpha isoform 1 
SPTB                  0.029   spectrin beta isoform a 
SPTB                  0.029   spectrin beta isoform b 
SYNE1                 0.029   spectrin repeat containing, nuclear envelope 1 isof...
ACTN4                 0.026   actinin, alpha 4 
FLNC                  0.025   gamma filamin isoform b 
FLNC                  0.025   gamma filamin isoform a 
SPTBN4                0.024   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
DMD                   0.024   dystrophin Dp427c isoform 
DMD                   0.024   dystrophin Dp427p1 isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press