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Search of human proteins with 56118955
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56118955 hypothetical protein LOC51233 [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56118955 hypothetical protein LOC51233 [Homo sapiens] 478 e-135
gi|214830655 cyclin Y-like 1 isoform 1 [Homo sapiens] 56 3e-08
gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens] 51 9e-07
gi|55956788 nucleolin [Homo sapiens] 48 8e-06
gi|239755288 PREDICTED: cyclin Y-like 2 [Homo sapiens] 45 5e-05
gi|239749780 PREDICTED: cyclin Y-like 2 [Homo sapiens] 45 5e-05
gi|239744040 PREDICTED: cyclin Y-like 2 [Homo sapiens] 45 5e-05
gi|221136914 ArfGAP with GTPase domain, ankyrin repeat and PH do... 39 0.003
gi|115529449 upstream binding transcription factor, RNA polymera... 39 0.003
gi|115529451 upstream binding transcription factor, RNA polymera... 39 0.003
gi|7657671 upstream binding transcription factor, RNA polymerase... 39 0.003
gi|157384998 low density lipoprotein receptor-related protein 4 ... 37 0.014
gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens] 37 0.018
gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens] 37 0.018
gi|16445033 ACRC protein [Homo sapiens] 37 0.018
gi|40217843 cartilage oligomeric matrix protein precursor [Homo ... 36 0.031
gi|4504487 histidine rich calcium binding protein precursor [Hom... 36 0.031
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 35 0.053
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 35 0.053
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 35 0.053
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 35 0.070
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 35 0.070
gi|31543806 thrombospondin 4 precursor [Homo sapiens] 35 0.070
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 35 0.070
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 35 0.070
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 35 0.070
gi|6005902 thrombospondin 3 precursor [Homo sapiens] 35 0.070
gi|6005757 chromatin-specific transcription elongation factor la... 34 0.091
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 34 0.091
gi|21493045 A-kinase anchor protein 6 [Homo sapiens] 34 0.091
>gi|56118955 hypothetical protein LOC51233 [Homo sapiens]
Length = 229
Score = 478 bits (1231), Expect = e-135
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MGNILTCCINSHCGWPRGKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEGQDLQ 60
MGNILTCCINSHCGWPRGKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEGQDLQ
Sbjct: 1 MGNILTCCINSHCGWPRGKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEGQDLQ 60
Query: 61 HISNQKMPTGPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCD 120
HISNQKMPTGPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCD
Sbjct: 61 HISNQKMPTGPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCD 120
Query: 121 DDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQ 180
DDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQ
Sbjct: 121 DDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQ 180
Query: 181 ACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLESLSDEEIHPG 229
ACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLESLSDEEIHPG
Sbjct: 181 ACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLESLSDEEIHPG 229
>gi|214830655 cyclin Y-like 1 isoform 1 [Homo sapiens]
Length = 308
Score = 55.8 bits (133), Expect = 3e-08
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 1 MGNILTCCINSHCGWPRGKDAPCYE--SDTDIYETVA--AATSESTTVEPGKLDVGATEG 56
MGN LTCC++ + G+ A E +DIYE V+ A VEP +LD G EG
Sbjct: 1 MGNTLTCCVSPNASPKLGRRAGSAELYCASDIYEAVSGDAVAVAPAVVEPAELDFGEGEG 60
Query: 57 QDLQHISNQKMP-----TGPPED--RLSLKFLPSSEED 87
LQHIS+++MP P D R S FL S+ D
Sbjct: 61 HHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTD 98
>gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens]
Length = 251
Score = 50.8 bits (120), Expect = 9e-07
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1 MGNILTCCINS----HCGWPRGKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEG 56
MG+ LTCC+ +C R PC+E + I ETVAA STT +P KLD+ A +
Sbjct: 1 MGSKLTCCLGPSGGLNCDCCRPDVGPCHECE--IPETVAATAPASTTAKPAKLDLKAKKA 58
Query: 57 QDLQHISNQKMP 68
Q +Q++S K P
Sbjct: 59 QLMQYLSLPKTP 70
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 47.8 bits (112), Expect = 8e-06
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 34/200 (17%)
Query: 35 AAATSESTTVEPGKLDV-----GATEGQDLQHISNQK---MPTGPPEDRLSLKFLPSSEE 86
AAAT TV P K GAT G+ L +K +P ++ + K S EE
Sbjct: 89 AAATPAKKTVTPAKAVTTPGKKGATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSDEE 148
Query: 87 DNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSC 146
++DD S ED E+DD D+D+D+D +I P+ ++ S
Sbjct: 149 EDDD----------SEED----------EEDDEDEDEDED-EIEPAAMKAAAAAPASEDE 187
Query: 147 SSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQACSEDSLF-LRCSLRHKDEEEEDDDD 205
ED+ +DDD +DD ++ + +P + + ++ +DE+EE+DD+
Sbjct: 188 DDEDDED----DEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDE 243
Query: 206 IHITARIESDLTLESLSDEE 225
E D + DEE
Sbjct: 244 DEDDDDDEDDEDDDDEDDEE 263
>gi|239755288 PREDICTED: cyclin Y-like 2 [Homo sapiens]
Length = 362
Score = 45.1 bits (105), Expect = 5e-05
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 1 MGNILTCCI--NSHCGWPRGKDAPCYESDTDIYETVA----AATSESTTVEPGKLDVGAT 54
MGNILTCC+ + G + + C+ +++IYE A A + VEPG++ A
Sbjct: 1 MGNILTCCVCPRASPGLHQHQGLVCH-CESEIYEAAAGDLIAGVPVAAAVEPGEVTFVAG 59
Query: 55 EGQDLQHISNQKMPTGPP-------EDRLSLKFLPSSEEDNDDAK 92
EG + HI ++MP P + S FL S+ D + K
Sbjct: 60 EGLHMHHICEREMPEDIPLEPNPSDHPKASTIFLRKSQTDVQEKK 104
>gi|239749780 PREDICTED: cyclin Y-like 2 [Homo sapiens]
Length = 362
Score = 45.1 bits (105), Expect = 5e-05
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 1 MGNILTCCI--NSHCGWPRGKDAPCYESDTDIYETVA----AATSESTTVEPGKLDVGAT 54
MGNILTCC+ + G + + C+ +++IYE A A + VEPG++ A
Sbjct: 1 MGNILTCCVCPRASPGLHQHQGLVCH-CESEIYEAAAGDLIAGVPVAAAVEPGEVTFVAG 59
Query: 55 EGQDLQHISNQKMPTGPP-------EDRLSLKFLPSSEEDNDDAK 92
EG + HI ++MP P + S FL S+ D + K
Sbjct: 60 EGLHMHHICEREMPEDIPLEPNPSDHPKASTIFLRKSQTDVQEKK 104
>gi|239744040 PREDICTED: cyclin Y-like 2 [Homo sapiens]
Length = 362
Score = 45.1 bits (105), Expect = 5e-05
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 1 MGNILTCCI--NSHCGWPRGKDAPCYESDTDIYETVA----AATSESTTVEPGKLDVGAT 54
MGNILTCC+ + G + + C+ +++IYE A A + VEPG++ A
Sbjct: 1 MGNILTCCVCPRASPGLHQHQGLVCH-CESEIYEAAAGDLIAGVPVAAAVEPGEVTFVAG 59
Query: 55 EGQDLQHISNQKMPTGPP-------EDRLSLKFLPSSEEDNDDAK 92
EG + HI ++MP P + S FL S+ D + K
Sbjct: 60 EGLHMHHICEREMPEDIPLEPNPSDHPKASTIFLRKSQTDVQEKK 104
>gi|221136914 ArfGAP with GTPase domain, ankyrin repeat and PH
domain 5 [Homo sapiens]
Length = 686
Score = 39.3 bits (90), Expect = 0.003
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1 MGNILTCCINSHCG--WPRGKDAPCYESDTDIYETVA----AATSESTTVEPGKLDVGAT 54
MGNILTCC++ + + + + C S+++IYE A A + V+P ++ V
Sbjct: 1 MGNILTCCVHPSVSLEFDQQQGSVC-PSESEIYEAGAGDRMAGAPMAAAVQPAEVTVEVG 59
Query: 55 EGQDLQHISNQKMP 68
E + HI +Q+MP
Sbjct: 60 EDLHMHHIRDQEMP 73
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 33/118 (27%)
Query: 60 QHISNQKMPT------GPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPR 113
++ISN++ P R +L+ SEED+++
Sbjct: 610 EYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEE----------------------- 646
Query: 114 SEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
EDD+ +D++++D + S GG DSS SSED +D+D DDD+DD
Sbjct: 647 DEDDEDEDEEEEDDENGDSSEDGG----DSSESSSEDESEDGDENEEDDEDEDDDEDD 700
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 83 SSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFD 142
SSE+ D ++ S + SED EDD+ +DDD+DD + + +G
Sbjct: 665 SSEDGGDSSE---SSSEDESEDGDE-----NEEDDEDEDDDEDDDEDEDNESEGSSSSSS 716
Query: 143 SSSCSSEDN 151
SS SS+ +
Sbjct: 717 SSGDSSDSD 725
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 33/118 (27%)
Query: 60 QHISNQKMPT------GPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPR 113
++ISN++ P R +L+ SEED+++
Sbjct: 610 EYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEE----------------------- 646
Query: 114 SEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
EDD+ +D++++D + S GG DSS SSED +D+D DDD+DD
Sbjct: 647 DEDDEDEDEEEEDDENGDSSEDGG----DSSESSSEDESEDGDENEEDDEDEDDDEDD 700
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 83 SSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFD 142
SSE+ D ++ S + SED EDD+ +DDD+DD + + +G
Sbjct: 665 SSEDGGDSSE---SSSEDESEDGDE-----NEEDDEDEDDDEDDDEDEDNESEGSSSSSS 716
Query: 143 SSSCSSEDN 151
SS SS+ +
Sbjct: 717 SSGDSSDSD 725
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 33/118 (27%)
Query: 60 QHISNQKMPT------GPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPR 113
++ISN++ P R +L+ SEED+++
Sbjct: 647 EYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEE----------------------- 683
Query: 114 SEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
EDD+ +D++++D + S GG DSS SSED +D+D DDD+DD
Sbjct: 684 DEDDEDEDEEEEDDENGDSSEDGG----DSSESSSEDESEDGDENEEDDEDEDDDEDD 737
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 83 SSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFD 142
SSE+ D ++ S + SED EDD+ +DDD+DD + + +G
Sbjct: 702 SSEDGGDSSE---SSSEDESEDGDE-----NEEDDEDEDDDEDDDEDEDNESEGSSSSSS 753
Query: 143 SSSCSSEDN 151
SS SS+ +
Sbjct: 754 SSGDSSDSD 762
>gi|157384998 low density lipoprotein receptor-related protein 4
[Homo sapiens]
Length = 1905
Score = 37.0 bits (84), Expect = 0.014
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 116 DDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQIL 175
D+DC D D+D ILP+ + D+ C S VC D+DC+DD D+
Sbjct: 54 DNDCGDHSDEDGCILPT-CSPLDFHCDNGKCIRR---SWVC---DGDNDCEDDSDEQD-- 104
Query: 176 PSPVQACSEDSL-----FLRCSLRHKDEEEEDDDD 205
P + C ED + SL H D + + D+
Sbjct: 105 -CPPRECEEDEFPCQNGYCIRSLWHCDGDNDCGDN 138
>gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens]
Length = 1302
Score = 36.6 bits (83), Expect = 0.018
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 49/208 (23%)
Query: 18 GKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEGQDLQHISNQKMPTGPPEDRLS 77
G+D +E DI + V TSESTT K+D ++ I N PE +S
Sbjct: 515 GRDLKPHEDQQDINKDVGVKTSESTTTVKSKVD-----EREKYMIGNSVQKISEPEAEIS 569
Query: 78 LKFLP---------------------------SSEEDNDDAKILPSPVQGSSEDNLSLVC 110
LP SS+E+ A++ P P+ +S + +V
Sbjct: 570 PGSLPVTANMKASENLKHIVNHDDVFEESEELSSDEEMKMAEMRP-PLIETSINQPKVVA 628
Query: 111 LPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDD 170
L ++ DD + D ++ + Q ++S+CSS + S+ + D
Sbjct: 629 LSNNKKDDTKETDSLSDEVTHNSNQ------NNSNCSSPSRM-------SDSVSLNTDSS 675
Query: 171 DAQILPSPVQACSEDSLFLRCSLRHKDE 198
L SPV+ D + +R +DE
Sbjct: 676 QDTSLCSPVKQTHID---INSKIRQEDE 700
>gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens]
Length = 1371
Score = 36.6 bits (83), Expect = 0.018
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 49/208 (23%)
Query: 18 GKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEGQDLQHISNQKMPTGPPEDRLS 77
G+D +E DI + V TSESTT K+D ++ I N PE +S
Sbjct: 515 GRDLKPHEDQQDINKDVGVKTSESTTTVKSKVD-----EREKYMIGNSVQKISEPEAEIS 569
Query: 78 LKFLP---------------------------SSEEDNDDAKILPSPVQGSSEDNLSLVC 110
LP SS+E+ A++ P P+ +S + +V
Sbjct: 570 PGSLPVTANMKASENLKHIVNHDDVFEESEELSSDEEMKMAEMRP-PLIETSINQPKVVA 628
Query: 111 LPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDD 170
L ++ DD + D ++ + Q ++S+CSS + S+ + D
Sbjct: 629 LSNNKKDDTKETDSLSDEVTHNSNQ------NNSNCSSPSRM-------SDSVSLNTDSS 675
Query: 171 DAQILPSPVQACSEDSLFLRCSLRHKDE 198
L SPV+ D + +R +DE
Sbjct: 676 QDTSLCSPVKQTHID---INSKIRQEDE 700
>gi|16445033 ACRC protein [Homo sapiens]
Length = 691
Score = 36.6 bits (83), Expect = 0.018
Identities = 39/172 (22%), Positives = 62/172 (36%), Gaps = 33/172 (19%)
Query: 56 GQDLQHISNQKMPTGPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSE 115
G DL+ + + P+D P D+ +A S + +DN +P
Sbjct: 133 GNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSDVPDDN 192
Query: 116 DDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLP--RSEDDDCDDDDDDAQ 173
DD DD+ DD SS+DN +P +S+D D DD D
Sbjct: 193 SDDSSDDNSDD--------------------SSDDNSDDSDVPDDKSDDSDVPDDSSDDS 232
Query: 174 ILPSPVQACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLESLSDEE 225
+P S+DS ++ DD + + +S+ +S D E
Sbjct: 233 DVPDD---SSDDS--------EAPDDSSDDSEAPDDSSDDSEAPDDSSDDSE 273
Score = 33.1 bits (74), Expect = 0.20
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 116 DDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSS--EDNLSLVCLPRSEDDDC---DDDDD 170
DDD DDD+ +D ++ D+S S +DN P DD DD+ D
Sbjct: 125 DDDNDDDNGNDLEVPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSD 184
Query: 171 DAQILPSPVQACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLESLSDEEI 226
D+ + S+D + ++ DD D+ +SD+ +S D ++
Sbjct: 185 DSDVPDDNSDDSSDD------NSDDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDV 234
Score = 32.3 bits (72), Expect = 0.35
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 72 PEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILP 131
P+D P D+ +A S + +D+ S+D + DD DD++
Sbjct: 245 PDDSSDDSEAPDDSSDDSEAPDDSSDDSEAPDDS--------SDDSEASDDSSDDSEASD 296
Query: 132 SRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQ-ACSEDSLFLR 190
DS + + + S V +S+D D DD+ D +P P + C+E +
Sbjct: 297 DSSD------DSEAPDDKSDDSDVPEDKSDDSDVPDDNSDDLEVPVPAEDLCNEGQI--- 347
Query: 191 CSLRHKDEEE 200
DEEE
Sbjct: 348 ----ASDEEE 353
Score = 29.3 bits (64), Expect = 2.9
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 27/141 (19%)
Query: 85 EEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSS 144
++++DD+ + SS+DN S+D D+ DD D +P D S
Sbjct: 180 DDNSDDSDVPDDNSDDSSDDN--------SDDSSDDNSDDSD---VPDDKSDDSDVPDDS 228
Query: 145 SCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQACSEDSLFLRCSLRHKDEEEEDDD 204
S S+ +P DD + DD + +P + S+DS ++ DD
Sbjct: 229 SDDSD-------VPDDSSDDSEAPDDSSDDSEAPDDS-SDDS--------EAPDDSSDDS 272
Query: 205 DIHITARIESDLTLESLSDEE 225
+ + +S+ + +S D E
Sbjct: 273 EAPDDSSDDSEASDDSSDDSE 293
>gi|40217843 cartilage oligomeric matrix protein precursor [Homo
sapiens]
Length = 757
Score = 35.8 bits (81), Expect = 0.031
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 31/108 (28%)
Query: 85 EEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSS 144
++ D+ +P+ Q S+ + + D CDDDDD+D +P
Sbjct: 442 QDSRDNCPTVPNSAQEDSDHD--------GQGDACDDDDDNDG--VP------------- 478
Query: 145 SCSSEDNLSLVCLPRSEDDDCD------DDDDDAQILPSPVQACSEDS 186
S DN LV P ED D D DD DA + + C E++
Sbjct: 479 --DSRDNCRLVPNPGQEDADRDGVGDVCQDDFDADKVVDKIDVCPENA 524
Score = 28.9 bits (63), Expect = 3.8
Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 23/148 (15%)
Query: 88 NDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCS 147
N D + G + DN C + DD D D D + G R + +C
Sbjct: 333 NPDQRNTDEDKWGDACDN----CRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCP 388
Query: 148 SEDNLSLVCLPRSEDDDCDDDD-----DDAQILPSPVQA-CSEDSLFLRCSLRHKDEEEE 201
+P S+ D D D D+ +P QA D + C D +++
Sbjct: 389 R--------VPNSDQKDSDGDGIGDACDNCPQKSNPDQADVDHDFVGDAC-----DSDQD 435
Query: 202 DDDDIHITARIESDLTLESLSDEEIHPG 229
D D H +R S ++ H G
Sbjct: 436 QDGDGHQDSRDNCPTVPNSAQEDSDHDG 463
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 35.8 bits (81), Expect = 0.031
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 84 SEEDND--DAKILPSPV---QGSSEDNLSLVCLPRSEDDDCDDDDDDDAQI----LPSRV 134
SEED D D P QG ED+ +DDD DDDDDDD I R
Sbjct: 221 SEEDEDVSDGHHHHGPSHRHQGHEEDD-------DDDDDDDDDDDDDDVSIEYRHQAHRH 273
Query: 135 QGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDD 170
QG D + RS ++D +DDDD
Sbjct: 274 QGHGIEEDEDVSDGHHHRDPSHRHRSHEEDDNDDDD 309
Score = 29.6 bits (65), Expect = 2.2
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 161 EDDDCDDDDDDAQILPSPVQA-------------CSEDSLFLRCSLRHKDEEEEDDDD 205
+DDD DDDDDD + QA S+ S RH+ EE+D+DD
Sbjct: 250 DDDDDDDDDDDDVSIEYRHQAHRHQGHGIEEDEDVSDGHHHRDPSHRHRSHEEDDNDD 307
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 35.0 bits (79), Expect = 0.053
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 83 SSEEDNDDAKILP-----SPVQGSSEDNLSLVCLPRSEDDDCDDDDDDD 126
S +E+ +D K+L S G S+ V L EDDD DDDDDDD
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDD 169
Score = 31.2 bits (69), Expect = 0.77
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 115 EDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
ED + +D++++D ++L + G + + S+ V L EDDD DDDDDD
Sbjct: 117 EDAESEDEEEEDVKLLS--ISG---KRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDD 168
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 35.0 bits (79), Expect = 0.053
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 83 SSEEDNDDAKILP-----SPVQGSSEDNLSLVCLPRSEDDDCDDDDDDD 126
S +E+ +D K+L S G S+ V L EDDD DDDDDDD
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDD 169
Score = 31.2 bits (69), Expect = 0.77
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 115 EDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
ED + +D++++D ++L + G + + S+ V L EDDD DDDDDD
Sbjct: 117 EDAESEDEEEEDVKLLS--ISG---KRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDD 168
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 35.0 bits (79), Expect = 0.053
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 83 SSEEDNDDAKILP-----SPVQGSSEDNLSLVCLPRSEDDDCDDDDDDD 126
S +E+ +D K+L S G S+ V L EDDD DDDDDDD
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDD 169
Score = 31.2 bits (69), Expect = 0.77
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 115 EDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
ED + +D++++D ++L + G + + S+ V L EDDD DDDDDD
Sbjct: 117 EDAESEDEEEEDVKLLS--ISG---KRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDD 168
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 34.7 bits (78), Expect = 0.070
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 39/109 (35%)
Query: 83 SSEEDNDDAKILP-----SPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGG 137
S +E+ +D K+L S G S+ V L EDDD DD++DDD
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDD----------- 173
Query: 138 CYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQACSEDS 186
EDDD DD DD+ +PV+ D+
Sbjct: 174 -----------------------EDDDDDDFDDEEAEEKAPVKKSIRDT 199
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 34.7 bits (78), Expect = 0.070
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 39/109 (35%)
Query: 83 SSEEDNDDAKILP-----SPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGG 137
S +E+ +D K+L S G S+ V L EDDD DD++DDD
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDD----------- 173
Query: 138 CYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQACSEDS 186
EDDD DD DD+ +PV+ D+
Sbjct: 174 -----------------------EDDDDDDFDDEEAEEKAPVKKSIRDT 199
>gi|31543806 thrombospondin 4 precursor [Homo sapiens]
Length = 961
Score = 34.7 bits (78), Expect = 0.070
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 21/77 (27%)
Query: 117 DDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSED-------DDCDDDD 169
D+CDDDDD+D +P V G DN LV P ED D C+ D
Sbjct: 661 DECDDDDDNDG--IPDLVPPG-----------PDNCRLVPNPAQEDSNSDGVGDICESDF 707
Query: 170 DDAQILPSPVQACSEDS 186
D Q++ + C E++
Sbjct: 708 DQDQVI-DRIDVCPENA 723
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 34.7 bits (78), Expect = 0.070
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 112 PRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
P SE++D +D D+DD + + G ++ E+ ED+D D+D+D+
Sbjct: 156 PDSEEEDDEDGDEDDEEEEENEA-GPPEGYEEEEEEEEE----------EDEDEDEDEDE 204
Query: 172 AQILPSPVQACSEDSLFLRCSLRHKDEEEEDDDD 205
A E+ + L ++ + ++EEDDDD
Sbjct: 205 A----GSELGEGEEEVGLSYLMKEEIQDEEDDDD 234
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 34.7 bits (78), Expect = 0.070
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 112 PRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
P SE++D +D D+DD + + G ++ E+ ED+D D+D+D+
Sbjct: 115 PDSEEEDDEDGDEDDEEEEENEA-GPPEGYEEEEEEEEE----------EDEDEDEDEDE 163
Query: 172 AQILPSPVQACSEDSLFLRCSLRHKDEEEEDDDD 205
A E+ + L ++ + ++EEDDDD
Sbjct: 164 A----GSELGEGEEEVGLSYLMKEEIQDEEDDDD 193
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 34.7 bits (78), Expect = 0.070
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 112 PRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDD 171
P SE++D +D D+DD + + G ++ E+ ED+D D+D+D+
Sbjct: 108 PDSEEEDDEDGDEDDEEEEENEA-GPPEGYEEEEEEEEE----------EDEDEDEDEDE 156
Query: 172 AQILPSPVQACSEDSLFLRCSLRHKDEEEEDDDD 205
A E+ + L ++ + ++EEDDDD
Sbjct: 157 A----GSELGEGEEEVGLSYLMKEEIQDEEDDDD 186
>gi|6005902 thrombospondin 3 precursor [Homo sapiens]
Length = 956
Score = 34.7 bits (78), Expect = 0.070
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 31/110 (28%)
Query: 85 EEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSS 144
++ D+ LP+ Q S+++ D+CD DDD+D +P V G
Sbjct: 633 QDTKDNCPQLPNSSQLDSDND--------GLGDECDGDDDNDG--IPDYVPPG------- 675
Query: 145 SCSSEDNLSLVCLPRSEDDD-------CDDD-DDDAQILPSPVQACSEDS 186
DN LV P +D D C+DD D+DA + P+ C E +
Sbjct: 676 ----PDNCRLVPNPNQKDSDGNGVGDVCEDDFDNDAVV--DPLDVCPESA 719
>gi|6005757 chromatin-specific transcription elongation factor large
subunit [Homo sapiens]
Length = 1047
Score = 34.3 bits (77), Expect = 0.091
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 158 PRSEDDDCDDDDDDAQILPSPVQACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLT 217
P E D ++ D +++I +D +EEEED D+ + + ESD +
Sbjct: 927 PEGEGSDAEEGDSESEIEDETFNPSEDDY----------EEEEEDSDEDYSSEAEESDYS 976
Query: 218 LESLSDEE 225
ESL EE
Sbjct: 977 KESLGSEE 984
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 34.3 bits (77), Expect = 0.091
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 17/77 (22%)
Query: 96 SPVQGSSEDNLSLVCLPRSEDDDCDDDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLV 155
SPV +S L L L EDDD D++DDDD QG +D SSE + SL+
Sbjct: 2240 SPVTTASGTTLRLPPLQPEEDDDEDEEDDDDLS------QG----YD----SSERDFSLI 2285
Query: 156 ---CLPRSEDDDCDDDD 169
+P + D D DD
Sbjct: 2286 DDPMMPANSDSSEDADD 2302
>gi|21493045 A-kinase anchor protein 6 [Homo sapiens]
Length = 2319
Score = 34.3 bits (77), Expect = 0.091
Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 63 SNQKMP-TGPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCDD 121
S+QKM TG ++SL S ED+ S + SS D LSL C +
Sbjct: 1662 SSQKMSFTG----QMSLDIASSINEDS-----AASLTELSSSDELSL----------CSE 1702
Query: 122 DDDDDAQILPSRVQGGCYRFDSSSCSSED-NLSLVCLPRSEDDDCDDDDDDAQILPSPVQ 180
D +P R S D N+S++ + S C DD+DD+ +L S
Sbjct: 1703 DIVLHKNKIPESNASFRKRLTRSVADESDVNVSMI-VNVSCTSACTDDEDDSDLLSSSTL 1761
Query: 181 ACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLES 220
+E+ L ++ +E+DD I I D TL S
Sbjct: 1762 TLTEEELCIK--------DEDDDSSIATDDEIYEDCTLMS 1793
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,258,958
Number of Sequences: 37866
Number of extensions: 628263
Number of successful extensions: 3806
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 2826
Number of HSP's gapped (non-prelim): 672
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.