Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AGAP5 Sequence: fasta or formatted (686aa) NCBI GI: 221136914
Description:

ArfGAP with GTPase domain, ankyrin repeat and PH domain 5

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         48           3
 C cysteine            2.9         20           2
 D aspartate           4.4         30           2
 E glutamate           6.6         45           2
 F phenylalanine       2.0         14           1
 G glycine             5.4         37           3
 H histidine           3.2         22           2
 I isoleucine          5.1         35           2
 K lysine              5.2         36           3
 L leucine             8.3         57           3
 M methionine          2.3         16           1
 N asparagine          4.7         32           2
 P proline             5.1         35           3
 Q glutamine           5.1         35           3
 R arginine            4.5         31           2
 S serine             12.5         86           3
 T threonine           7.1         49           2
 V valine              4.8         33           2
 W tryptophan          1.6         11           1
 Y tyrosine            2.0         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ArfGAP with GTPase domain, ankyrin repeat and PH do... 
AGAP6                 0.957   centaurin, gamma-like family, member 3 
AGAP9                 0.954   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.952   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP4                 0.930   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP8                 0.930   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP7                 0.924   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP11                0.703   ankyrin repeat and GTPase domain Arf GTPase activat...
AGAP1                 0.579   centaurin, gamma 2 isoform 2 
AGAP1                 0.402   centaurin, gamma 2 isoform 1 
AGAP3                 0.397   centaurin, gamma 3 isoform a 
AGAP2                 0.323   centaurin, gamma 1 isoform PIKE-S 
AGAP2                 0.317   centaurin, gamma 1 isoform PIKE-L 
LOC100294038          0.236   PREDICTED: similar to centaurin, gamma-like family,...
CCNYL2                0.106   PREDICTED: cyclin Y-like 2 
CCNYL2                0.106   PREDICTED: cyclin Y-like 2 
CCNYL2                0.106   PREDICTED: cyclin Y-like 2 
ACAP3                 0.085   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
ACAP2                 0.075   centaurin, beta 2 
ACAP1                 0.074   centaurin beta1 
ASAP1                 0.073   development and differentiation enhancing factor 1 [...
GIT2                  0.067   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.067   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.067   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.067   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.067   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.067   G protein-coupled receptor kinase interacting ArfGA...
GIT1                  0.066   G protein-coupled receptor kinase interactor 1 isof...
GIT1                  0.066   G protein-coupled receptor kinase interactor 1 isofo...
ASAP3                 0.065   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press