Guide to the Human Genome
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Name: AKAP6 Sequence: fasta or formatted (2319aa) NCBI GI: 21493045
Description:

A-kinase anchor protein 6

Referenced in:

Cyclic Nucleotides

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8        111           2
 C cysteine            2.0         46           2
 D aspartate           6.9        159           3
 E glutamate           9.4        217           3
 F phenylalanine       1.9         44           2
 G glycine             5.0        117           2
 H histidine           2.8         65           3
 I isoleucine          3.9         91           2
 K lysine              7.2        166           3
 L leucine            10.2        237           2
 M methionine          2.5         58           2
 N asparagine          4.8        111           2
 P proline             4.4        102           3
 Q glutamine           4.6        107           3
 R arginine            3.1         73           3
 S serine             13.6        315           5
 T threonine           5.4        126           3
 V valine              4.7        110           2
 W tryptophan          0.9         21           1
 Y tyrosine            1.9         43           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   A-kinase anchor protein 6 
SYNE1                 0.014   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.014   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.014   spectrin repeat containing, nuclear envelope 1 isof...
DSPP                  0.013   dentin sialophosphoprotein preproprotein 
SYNE2                 0.012   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.012   spectrin repeat containing, nuclear envelope 2 isof...
CEP68                 0.011   centrosomal protein 68kDa 
SYNE1                 0.009   spectrin repeat containing, nuclear envelope 1 isof...
GOLGB1                0.007   golgi autoantigen, golgin subfamily b, macrogolgin ...
ERC1                  0.007   RAB6-interacting protein 2 isoform delta 
ERC1                  0.006   RAB6-interacting protein 2 isoform epsilon 
MACF1                 0.006   microfilament and actin filament cross-linker protei...
MACF1                 0.006   microfilament and actin filament cross-linker protei...
SPTB                  0.006   spectrin beta isoform a 
SPTB                  0.006   spectrin beta isoform b 
DST                   0.006   dystonin isoform 4 
DST                   0.006   dystonin isoform 3 
DST                   0.006   dystonin isoform 2 
DST                   0.006   dystonin isoform 1 
DST                   0.006   dystonin isoform 1eA precursor 
GOLGA4                0.006   golgi autoantigen, golgin subfamily a, 4 
CENPE                 0.005   centromere protein E 
RAD50                 0.005   RAD50 homolog isoform 2 
RAD50                 0.005   RAD50 homolog isoform 1 
CEP110                0.005   centrosomal protein 110kDa 
UTRN                  0.005   utrophin 
SPTBN4                0.005   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
UACA                  0.004   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.004   uveal autoantigen with coiled-coil domains and ankyr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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