Guide to the Human Genome
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Name: SFRP1 Sequence: fasta or formatted (314aa) NCBI GI: 56117838
Description:

secreted frizzled-related protein 1

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         21           2
 C cysteine            5.1         16           1
 D aspartate           4.5         14           1
 E glutamate           5.7         18           1
 F phenylalanine       4.5         14           2
 G glycine             6.1         19           2
 H histidine           2.9          9           2
 I isoleucine          3.8         12           2
 K lysine             11.8         37           4
 L leucine            10.2         32           2
 M methionine          3.2         10           1
 N asparagine          3.8         12           1
 P proline             7.0         22           2
 Q glutamine           3.5         11           2
 R arginine            3.2         10           2
 S serine              5.1         16           2
 T threonine           2.9          9           2
 V valine              6.1         19           1
 W tryptophan          1.3          4           1
 Y tyrosine            2.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secreted frizzled-related protein 1 
SFRP5                 0.520   secreted frizzled-related protein 5 
SFRP2                 0.327   secreted frizzled-related protein 2 precursor 
FZD7                  0.126   frizzled 7 
FZD1                  0.123   frizzled 1 
FZD4                  0.121   frizzled 4 
FZD2                  0.119   frizzled 2 
FZD10                 0.119   frizzled 10 
FZD9                  0.115   frizzled 9 
FZD8                  0.107   frizzled 8 
FZD5                  0.105   frizzled 5 precursor 
FRZB                  0.104   frizzled-related protein 
SFRP4                 0.099   secreted frizzled-related  protein 4 
FZD3                  0.097   frizzled 3 
FZD6                  0.088   frizzled 6 
CORIN                 0.075   corin 
CPZ                   0.061   carboxypeptidase Z isoform 2 precursor 
CPZ                   0.061   carboxypeptidase Z isoform 1 
COL18A1               0.060   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
MFRP                  0.046   membrane frizzled-related protein 
SMO                   0.038   smoothened 
KIAA0247              0.016   hypothetical protein LOC9766 
CFB                   0.013   complement factor B preproprotein 
RSF1                  0.013   remodeling and spacing factor 1 
ANKRD12               0.011   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.011   ankyrin repeat domain 12 isoform 1 
RC3H1                 0.011   roquin 
RFPL3                 0.009   ret finger protein-like 3 isoform 1 
RFPL3                 0.009   ret finger protein-like 3 isoform 2 
BIRC6                 0.008   baculoviral IAP repeat-containing 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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