Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RFPL3 Sequence: fasta or formatted (317aa) NCBI GI: 149408135
Description:

ret finger protein-like 3 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {288aa} ret finger protein-like 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         13           2
 C cysteine            5.0         16           4
 D aspartate           5.7         18           2
 E glutamate           5.4         17           2
 F phenylalanine       4.4         14           2
 G glycine             5.7         18           1
 H histidine           1.6          5           1
 I isoleucine          3.5         11           1
 K lysine              4.4         14           2
 L leucine            12.3         39           2
 M methionine          3.2         10           1
 N asparagine          3.8         12           2
 P proline             6.0         19           2
 Q glutamine           4.1         13           1
 R arginine            6.9         22           1
 S serine              9.1         29           2
 T threonine           5.7         18           2
 V valine              7.3         23           1
 W tryptophan          0.9          3           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ret finger protein-like 3 isoform 1 
RFPL2                 0.934   ret finger protein-like 2 isoform 1 
RFPL1                 0.918   ret finger protein-like 1 
RFPL3                 0.907   ret finger protein-like 3 isoform 2 
RFPL2                 0.859   ret finger protein-like 2 isoform 2 
RFPL2                 0.853   ret finger protein-like 2 isoform 3 
RFPL2                 0.853   ret finger protein-like 2 isoform 3 
RFPL4A                0.500   ret finger protein-like 4A 
TRIM27                0.205   ret finger protein 
BTN3A3                0.199   butyrophilin, subfamily 3, member A3 isoform a 
BTN3A3                0.199   butyrophilin, subfamily 3, member A3 isoform b [Homo...
MEFV                  0.199   Mediterranean fever protein 
RFPL4B                0.197   ret finger protein-like 4B 
BTN3A1                0.192   butyrophilin, subfamily 3, member A1 isoform c [Hom...
BTN3A1                0.192   butyrophilin, subfamily 3, member A1 isoform a [Homo...
TRIM21                0.188   tripartite motif protein 21 
TRIML1                0.179   tripartite motif family-like 1 
TRIM11                0.178   tripartite motif-containing 11 
BTN1A1                0.175   butyrophilin, subfamily 1, member A1 
BTN2A2                0.175   butyrophilin, subfamily 2, member A2 isoform b [Homo...
BTN2A2                0.175   butyrophilin, subfamily 2, member A2 isoform a 
BTN2A1                0.170   butyrophilin, subfamily 2, member A1 isoform 1 precur...
TRIM39                0.168   tripartite motif-containing 39 isoform 2 
TRIM39                0.168   tripartite motif-containing 39 isoform 1 
TRIM38                0.163   tripartite motif-containing 38 
ERMAP                 0.163   erythroblast membrane-associated protein precursor [...
ERMAP                 0.163   erythroblast membrane-associated protein precursor [...
TRIM69                0.155   tripartite motif-containing 69 isoform b 
TRIM69                0.155   tripartite motif-containing 69 isoform a 
TRIM68                0.155   ring finger protein 137 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press