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Search of human proteins with 55956921
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform
b [Homo sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 585 e-167
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 563 e-161
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 348 3e-96
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 340 8e-94
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 337 9e-93
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 328 3e-90
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 304 5e-83
gi|20373175 musashi 2 isoform a [Homo sapiens] 189 2e-48
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 183 1e-46
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 179 3e-45
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 179 3e-45
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 179 3e-45
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 179 3e-45
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 177 7e-45
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 177 7e-45
gi|25121993 musashi 2 isoform b [Homo sapiens] 176 2e-44
gi|4505255 musashi 1 [Homo sapiens] 169 2e-42
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 155 3e-38
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 155 3e-38
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 155 3e-38
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 152 3e-37
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 152 3e-37
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 148 5e-36
gi|6678271 TAR DNA binding protein [Homo sapiens] 117 2e-26
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 83 2e-16
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 83 2e-16
gi|55956788 nucleolin [Homo sapiens] 79 5e-15
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 77 1e-14
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 77 1e-14
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 77 1e-14
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 585 bits (1508), Expect = e-167
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
Sbjct: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
Sbjct: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
Query: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
Sbjct: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
Query: 241 GSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
GSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY
Sbjct: 241 GSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 563 bits (1450), Expect = e-161
Identities = 285/332 (85%), Positives = 285/332 (85%), Gaps = 47/332 (14%)
Query: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
Sbjct: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
Sbjct: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
Query: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
Sbjct: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
Query: 241 GSGGRGNRNRGNRGSGGGGGGGG------------------------------------- 263
GSGGRGNRNRGNRGSGGGGGGGG
Sbjct: 241 GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 300
Query: 264 ----------QGSTNYGKSQRRGGHQNNYKPY 285
QGSTNYGKSQRRGGHQNNYKPY
Sbjct: 301 YGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 348 bits (893), Expect = 3e-96
Identities = 179/277 (64%), Positives = 213/277 (76%), Gaps = 14/277 (5%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
Query: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGS-GGRGNR 248
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE Y QQQQ+GS GG R
Sbjct: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
Query: 249 NRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
RG GG + YGK RRGGHQN+YKPY
Sbjct: 260 ARGR---------GGDQQSGYGKVSRRGGHQNSYKPY 287
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 340 bits (872), Expect = 8e-94
Identities = 181/317 (57%), Positives = 216/317 (68%), Gaps = 45/317 (14%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
Query: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ----------- 239
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE YQQQQ
Sbjct: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
Query: 240 ------------------YGSGGRGNRNRGNRGSGGGGGGGGQGSTNY------------ 269
Y + G GN ++G GG GG G NY
Sbjct: 260 ARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSG 319
Query: 270 -GKSQRRGGHQNNYKPY 285
GK RRGGHQN+YKPY
Sbjct: 320 YGKVSRRGGHQNSYKPY 336
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 337 bits (863), Expect = 9e-93
Identities = 179/296 (60%), Positives = 213/296 (71%), Gaps = 33/296 (11%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
Query: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
Query: 232 KEVY-QQQQYGS-GGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
KE Y QQQQ+GS GG R RG GG + YGK RRGGHQN+YKPY
Sbjct: 260 KEQYQQQQQWGSRGGFAGRARGR---------GGDQQSGYGKVSRRGGHQNSYKPY 306
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 328 bits (842), Expect = 3e-90
Identities = 181/336 (53%), Positives = 216/336 (64%), Gaps = 64/336 (19%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
Query: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
Query: 232 KEVYQQQQ-----------------------------YGSGGRGNRNRGNRGSGGGGGGG 262
KE YQQQQ Y + G GN ++G GG GG
Sbjct: 260 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 319
Query: 263 GQGSTNY-------------GKSQRRGGHQNNYKPY 285
G NY GK RRGGHQN+YKPY
Sbjct: 320 YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 304 bits (779), Expect = 5e-83
Identities = 152/242 (62%), Positives = 182/242 (75%), Gaps = 11/242 (4%)
Query: 55 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
Query: 115 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 173
F+LFKDAASV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
Query: 174 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
FG FGEIE IELPMD K N+RRGF FIT+ +EEPVKK+LE ++H + KCEIKVAQPKE
Sbjct: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
Query: 234 VY-QQQQYGSGGRGNRNRGNRGSGGGGGGGGQG---------STNYGKSQRRGGHQNNYK 283
VY QQQQ GGRG G G+ G G G GQ YG G NY
Sbjct: 313 VYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS 372
Query: 284 PY 285
Y
Sbjct: 373 GY 374
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 189 bits (480), Expect = 2e-48
Identities = 97/204 (47%), Positives = 128/204 (62%), Gaps = 10/204 (4%)
Query: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
NG++G +A+ ++ D GKMF+GGLSW TS L+DYF+KFGE+ +C + DP T RSRG
Sbjct: 4 NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
Query: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATE 167
FGF+ F D ASV+KVL Q H LD + IDPK A + P KKIFVGGL+
Sbjct: 64 FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
E +++YF +FG++E L D N+ RGF F+TF+ E+ V+KV E FH ++ E K
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 228 VAQPKEVYQQQQYGSGGRGNRNRG 251
AQPKEV + G RG R RG
Sbjct: 184 KAQPKEV----MFPPGTRG-RARG 202
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 183 bits (465), Expect = 1e-46
Identities = 90/240 (37%), Positives = 141/240 (58%), Gaps = 9/240 (3%)
Query: 47 PPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 106
P SG + G++ + K E K+F+GGLS++T+ L+++F K+G + DC + DP
Sbjct: 12 PDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQ 71
Query: 107 TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVG 159
T RSRGFGF+ + V+ + + H++DGRV++PK+A++ + VKKIFVG
Sbjct: 72 TKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVG 131
Query: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV 219
G+ + E +R+YF ++G+IE IE+ D + K+RGF F+TF + + V K++ +K+HT+
Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
Query: 220 SGSKCEIKVAQPKEVYQQ--QQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGG 277
+G CE+K A K+ Q Q G GG G G+ GGGGG N+G GG
Sbjct: 192 NGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGG 251
Score = 36.6 bits (83), Expect = 0.026
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 240 YGSGGRGNRNRGNRGSGGGGG------GGGQGSTNYGKSQRRGGHQNNYKPY 285
YG GG G N+G G GGGGG GG G NYG GG+ N++ Y
Sbjct: 289 YGGGGPGYGNQGG-GYGGGGGYDGYNEGGNFGGGNYG----GGGNYNDFGNY 335
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 240 YGSGGRGNRNRGNRGSGG-------GGGGGGQGSTNYGKSQRRGG 277
YG GG G +RG G GG GG GGG G Y + GG
Sbjct: 277 YG-GGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 236 QQQQYGS------GGRGNRNRGNRGSGGGGGGGGQGSTNY 269
QQ YG GGR + + G G GGG GG GS +
Sbjct: 339 QQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 378
Score = 28.1 bits (61), Expect = 9.2
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 237 QQQYGSGGRGNRNRGNRGSG---GGGGGGGQGSTNYG 270
QQQ G + G R SG GGG G G GS YG
Sbjct: 338 QQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYG 374
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 179 bits (453), Expect = 3e-45
Identities = 87/237 (36%), Positives = 142/237 (59%), Gaps = 22/237 (9%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
+ +E K+F+GGLS++T+++ L++Y+ ++G++ DC + DP + RSRGFGF+ F A
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVGGLNPEATEEKIREYFGE 176
V+ + + H +DGRV++PK+A+A ++ VKK+FVGG+ + E +R+YF E
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+I+ IE+ D + K+RGF F+TF + +PV K++ +K+HT++G E++ A ++ Q
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQ-----------GSTNYGKSQRRGGHQNNY 282
+ Q GRG GN G G GGGG GS YG + G N Y
Sbjct: 195 EVQSSRSGRG----GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Score = 63.2 bits (152), Expect = 3e-10
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 142 PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFIT 201
P + +K+ +K+F+GGL+ E TEE +R Y+ ++G++ + DP + RGF F+T
Sbjct: 9 PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68
Query: 202 FKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
F V + + H++ G +V +PK +++ G G
Sbjct: 69 FSSMAEVDAAMAARPHSIDG-----RVVEPKRAVAREESGKPG 106
Score = 37.7 bits (86), Expect = 0.012
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 240 YGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
YG GGRG G G G GGG G G NYG G+ N++ Y
Sbjct: 262 YG-GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 306
Score = 34.7 bits (78), Expect = 0.098
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 240 YGSGGRGNRNRGNRGSGGGG-----GGGGQGSTNYGKSQRRGGHQNNYKP 284
YG GG G GN+G G GG GGG GS NY +NY P
Sbjct: 269 YGGGGPGY---GNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGP 315
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 179 bits (453), Expect = 3e-45
Identities = 87/237 (36%), Positives = 142/237 (59%), Gaps = 22/237 (9%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
+ +E K+F+GGLS++T+++ L++Y+ ++G++ DC + DP + RSRGFGF+ F A
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVGGLNPEATEEKIREYFGE 176
V+ + + H +DGRV++PK+A+A ++ VKK+FVGG+ + E +R+YF E
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+I+ IE+ D + K+RGF F+TF + +PV K++ +K+HT++G E++ A ++ Q
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQ-----------GSTNYGKSQRRGGHQNNY 282
+ Q GRG GN G G GGGG GS YG + G N Y
Sbjct: 183 EVQSSRSGRG----GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
Score = 63.5 bits (153), Expect = 2e-10
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 146 MAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEE 205
M +K+ +K+F+GGL+ E TEE +R Y+ ++G++ + DP + RGF F+TF
Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
Query: 206 EPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
V + + H++ G +V +PK +++ G G
Sbjct: 61 AEVDAAMAARPHSIDG-----RVVEPKRAVAREESGKPG 94
Score = 37.7 bits (86), Expect = 0.012
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 240 YGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
YG GGRG G G G GGG G G NYG G+ N++ Y
Sbjct: 250 YG-GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 294
Score = 34.7 bits (78), Expect = 0.098
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 240 YGSGGRGNRNRGNRGSGGGG-----GGGGQGSTNYGKSQRRGGHQNNYKP 284
YG GG G GN+G G GG GGG GS NY +NY P
Sbjct: 257 YGGGGPGY---GNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGP 303
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 179 bits (453), Expect = 3e-45
Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 11/221 (4%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV G CE++ A PK+ +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGG 277
S RG R GN G G G G G G+ N+G+ G
Sbjct: 186 MASASSSQRGRRGSGNFGGGRGDGFG--GNDNFGRGGNFSG 224
Score = 58.2 bits (139), Expect = 8e-09
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K A + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 179 bits (453), Expect = 3e-45
Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 11/221 (4%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV G CE++ A PK+ +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGG 277
S RG R GN G G G G G G+ N+G+ G
Sbjct: 186 MASASSSQRGRRGSGNFGGGRGDGFG--GNDNFGRGGNFSG 224
Score = 58.2 bits (139), Expect = 8e-09
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K A + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 177 bits (450), Expect = 7e-45
Identities = 85/222 (38%), Positives = 135/222 (60%), Gaps = 13/222 (5%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYGKSQRRGG 277
Q+ S R R G+ GGG GGG G+ N+G+ G
Sbjct: 184 -QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSG 224
Score = 57.4 bits (137), Expect = 1e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
Score = 36.2 bits (82), Expect = 0.034
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 235 YQQQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNN 281
Y Q G GG G+ + N G GGG GGG + G S G+ NN
Sbjct: 274 YGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNN 320
Score = 34.7 bits (78), Expect = 0.098
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 240 YGSGGRGNRNRGNRGSGGG-------GGGGGQGSTNYGKSQRRGGHQNNYKPY 285
YGSGG+G N+G+ G G GGGGG G + G + GG N++ Y
Sbjct: 267 YGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGS-GSNFGGGGSYNDFGNY 318
Score = 32.0 bits (71), Expect = 0.64
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 240 YGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQN 280
YG GG G G+RG G GG G G + YG S + N
Sbjct: 253 YGGGGPGYSG-GSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 177 bits (450), Expect = 7e-45
Identities = 85/222 (38%), Positives = 135/222 (60%), Gaps = 13/222 (5%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYGKSQRRGG 277
Q+ S R R G+ GGG GGG G+ N+G+ G
Sbjct: 184 -QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSG 224
Score = 57.4 bits (137), Expect = 1e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 176 bits (446), Expect = 2e-44
Identities = 91/188 (48%), Positives = 117/188 (62%), Gaps = 10/188 (5%)
Query: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
+ KMF+GGLSW TS L+DYF+KFGE+ +C + DP T RSRGFGF+ F D ASV+KVL
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 129 DQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
Q H LD + IDPK A + P KKIFVGGL+ E +++YF +FG++E
Sbjct: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSG 243
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV + G
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEV----MFPPG 191
Query: 244 GRGNRNRG 251
RG R RG
Sbjct: 192 TRG-RARG 198
Score = 65.9 bits (159), Expect = 4e-11
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
P K+F+GGL+ + + + +R+YF +FGEI + DP + RGF F+TF + V KV
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 212 LEKKFHTVSGSKCEIKV-----AQPKEVYQQQQYGSGG 244
L + H + + KV AQPK V + ++ GG
Sbjct: 75 LGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGG 112
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 169 bits (429), Expect = 2e-42
Identities = 83/172 (48%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
D KMF+GGLSW T+++ L++YF +FGEV +C + DP T RSRGFGF+ F D A V+KV
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 128 LDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEA 182
L Q H LD + IDPK A + P KKIFVGGL+ T E +++YF +FG+++
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 183 IELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEV 234
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 155 bits (393), Expect = 3e-38
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 13/215 (6%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ +
Sbjct: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ +
Sbjct: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYG 270
Q+ S R+R G+ GGG GGG G+ N+G
Sbjct: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFG 217
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 155 bits (393), Expect = 3e-38
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 13/215 (6%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ +
Sbjct: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ +
Sbjct: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYG 270
Q+ S R+R G+ GGG GGG G+ N+G
Sbjct: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFG 217
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 155 bits (393), Expect = 3e-38
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 13/215 (6%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ +
Sbjct: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ +
Sbjct: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYG 270
Q+ S R+R G+ GGG GGG G+ N+G
Sbjct: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFG 217
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 152 bits (384), Expect = 3e-37
Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 21/225 (9%)
Query: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ GK+FVGGL W T+++ L+ YF+++GEVVDC I D T +SRGFGF+ FKD V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167
VL + H LDGR IDPK P + KIFVGG+ E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
++REYF +FG + + + D + + RGF FITF++E+ V + + FH + G K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYG 270
A+P++ Q Q G+ G+R N +G G YG
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
EG Q + + K+FVGG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145
I F+D SV++ ++ H + G+ ++ K+A
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 152 bits (384), Expect = 3e-37
Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 21/225 (9%)
Query: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ GK+FVGGL W T+++ L+ YF+++GEVVDC I D T +SRGFGF+ FKD V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167
VL + H LDGR IDPK P + KIFVGG+ E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
++REYF +FG + + + D + + RGF FITF++E+ V + + FH + G K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYG 270
A+P++ Q Q G+ G+R N +G G YG
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
EG Q + + K+FVGG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145
I F+D SV++ ++ H + G+ ++ K+A
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 148 bits (374), Expect = 5e-36
Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 15/223 (6%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
K+F+GGL+ TS+ L+ +F FG + DC + ++P T RSR FGF+ + + + +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 131 KEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
H +DG ++ K+A++ + VKK+FVGGL + E + E+F +FG +E
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE-VYQQQQYGS 242
E+ D + K+RGF F+ F+ + K KFH + G + E+K A PKE +Y S
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY------S 181
Query: 243 GGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
GG G +R +RG GG G GG G G S+ GG N+Y Y
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGG-GRDQNGLSKGGGGGYNSYGGY 223
Score = 52.0 bits (123), Expect = 6e-07
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 148 MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP 207
M+ + K+F+GGLN + +E +R +F FG + + ++P+ + R F F+T+ E
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 208 VKKVLEKKFHTVSGSKCEIKVAQPKE 233
+ H V G+ E+K A +E
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSRE 86
Score = 29.3 bits (64), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 241 GSGGRGNRNRGNRGS-----GGGGGGGGQGSTNY 269
G GG G + G R + GG GGGGG G +++
Sbjct: 272 GGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF 305
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 117 bits (292), Expect = 2e-26
Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 13/224 (5%)
Query: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
+ + + + V GL W T+++DLK+YF+ FGEV+ +K D TG S+GFGF+ F
Sbjct: 94 VKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 153
Query: 120 DAASVEKVLDQKEHRLDGRVIDPK--KAMAMKKDPV--KKIFVGGLNPEATEEKIREYFG 175
+ + KV+ Q+ H +DGR D K + + +P+ +K+FVG + TE+++RE+F
Sbjct: 154 EYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 176 EFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY 235
++G++ + +P R F F+TF +++ + + + + G I A+PK
Sbjct: 213 QYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDL-IIKGISVHISNAEPKHNS 266
Query: 236 QQQQYGSGGRGNR--NRGNRGSGGGGGGGGQGSTNYGKSQRRGG 277
+Q SG G GN+G G GGG G N S GG
Sbjct: 267 NRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGG 310
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 83.2 bits (204), Expect = 2e-16
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
N + E DA +F L+ +DL+++F+ G+V D + D N+ RS+G ++ F D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 121 AASVEKVLDQKEHRLDGRVI-------DPKKAMAMKKDPVK------KIFVGGLNPEATE 167
+SV + R+ G I + +A AM + K +++VG L+ TE
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
+ +R F FG IE+I+L MD + + +G+ FITF + E KK LE+
Sbjct: 264 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 52 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 111
+N A N K +++VG L ++ ++ L+ F FG + + MD TGRS+
Sbjct: 232 KNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 112 GFGFILFKDAASVEKVLDQ 130
G+GFI F D+ +K L+Q
Sbjct: 292 GYGFITFSDSECAKKALEQ 310
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 83.2 bits (204), Expect = 2e-16
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
N + E DA +F L+ +DL+++F+ G+V D + D N+ RS+G ++ F D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 121 AASVEKVLDQKEHRLDGRVI-------DPKKAMAMKKDPVK------KIFVGGLNPEATE 167
+SV + R+ G I + +A AM + K +++VG L+ TE
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
+ +R F FG IE+I+L MD + + +G+ FITF + E KK LE+
Sbjct: 264 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 52 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 111
+N A N K +++VG L ++ ++ L+ F FG + + MD TGRS+
Sbjct: 232 KNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 112 GFGFILFKDAASVEKVLDQ 130
G+GFI F D+ +K L+Q
Sbjct: 292 GYGFITFSDSECAKKALEQ 310
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 79.0 bits (193), Expect = 5e-15
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 56 EGDQINASKNEEDAGK---MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-TGRSR 111
+ KN +G+ + + LS+ +++ L++ F K IK+ N G+S+
Sbjct: 469 QNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA-----TFIKVPQNQNGKSK 523
Query: 112 GFGFILFKDAASVEKVLDQKEHR-LDGRVI-----DPKKAMAMKKDPVKKIFVGGLNPEA 165
G+ FI F ++ L+ R ++GR I P+ + + P K +FV GL+ +
Sbjct: 524 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDT 583
Query: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
TEE ++E F G + A + D + +GF F+ F EE K E + + G+K
Sbjct: 584 TEETLKESFD--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 640
Query: 225 EIKVAQPKEV--YQQQQYGSGGRGNR--NRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQN 280
+ A+PK + + G GG G R RG RG GG G GG G + R GG
Sbjct: 641 TLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGG--G 698
Query: 281 NYKP 284
++KP
Sbjct: 699 DHKP 702
Score = 63.2 bits (152), Expect = 3e-10
Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 16/241 (6%)
Query: 6 EEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKN 65
+++ E ++ E E E P G A P + EG + + N
Sbjct: 249 DDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFN 308
Query: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
+FVG L+++ S +LK + D + +D G +R FG++ F+ A +E
Sbjct: 309 ------LFVGNLNFNKSAPELKTGISDVFAKNDLAV-VDVRIGMTRKFGYVDFESAEDLE 361
Query: 126 KVLDQKEHRLDGRVI---DPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEA 182
K L+ ++ G I PK + K+ + + L + T+++++E F + EI
Sbjct: 362 KALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRL 421
Query: 183 IELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
+ K K +G +I FK E +K E+K T + I + E Q Q Y
Sbjct: 422 VS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR-SISLYYTGEKGQNQDYRG 475
Query: 243 G 243
G
Sbjct: 476 G 476
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 77.4 bits (189), Expect = 1e-14
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
+PME A E VP+GE+P GA ++A E ++ + EE
Sbjct: 678 EPMEKDPAEP---ETVPDGETPEDENP-TEEGADNSSAK--------MEEEEEEEEEEEE 725
Query: 68 DAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR---SRGFGFILFKDAA 122
+F+ L++DT+++ LK+ F+K G V C+I N S GFGF+ ++
Sbjct: 726 SLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPE 785
Query: 123 SVEKVLDQKE------HRLDGRVID---------PKKAMAMKKDPVKKIFVGGLNPEATE 167
+K L Q + H+L+ R+ + +K +K KI V + +A
Sbjct: 786 QAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHS 845
Query: 168 EKIREYFGEFGEIEAIELPMD-PKLNKRRGFVFITFKEEEPVKKVLEKKFHT 218
+IRE F FGE++ + LP RGF F+ F ++ K+ H+
Sbjct: 846 REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHS 897
Score = 47.8 bits (112), Expect = 1e-05
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 33/227 (14%)
Query: 11 ETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG 70
E + A E A P + G G G PP AE ++ K
Sbjct: 238 EGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEAR---AETEKPANQKEPTTCH 294
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT-GRSRGFGFILFKDAASVEKVLD 129
+ + G ++ ++K++ ++ V I++ N G G+ F+ F + V++ L
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKPVA---IRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 130 QKEHRLDGRVID---PKKAMAMKKDPVK-----------------------KIFVGGLNP 163
+ GR I+ K K P ++FV L
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 164 EATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
+TEE + + F ++G + + P+D K +GF FITF E K
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 33.1 bits (74), Expect = 0.29
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ V L ++ + F FG + DC++K + G+ R FGFI FK +K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQK 57
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 77.4 bits (189), Expect = 1e-14
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
+PME A E VP+GE+P GA ++A E ++ + EE
Sbjct: 678 EPMEKDPAEP---ETVPDGETPEDENP-TEEGADNSSAK--------MEEEEEEEEEEEE 725
Query: 68 DAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR---SRGFGFILFKDAA 122
+F+ L++DT+++ LK+ F+K G V C+I N S GFGF+ ++
Sbjct: 726 SLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPE 785
Query: 123 SVEKVLDQKE------HRLDGRVID---------PKKAMAMKKDPVKKIFVGGLNPEATE 167
+K L Q + H+L+ R+ + +K +K KI V + +A
Sbjct: 786 QAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHS 845
Query: 168 EKIREYFGEFGEIEAIELPMD-PKLNKRRGFVFITFKEEEPVKKVLEKKFHT 218
+IRE F FGE++ + LP RGF F+ F ++ K+ H+
Sbjct: 846 REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHS 897
Score = 47.8 bits (112), Expect = 1e-05
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 33/227 (14%)
Query: 11 ETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG 70
E + A E A P + G G G PP AE ++ K
Sbjct: 238 EGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEAR---AETEKPANQKEPTTCH 294
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT-GRSRGFGFILFKDAASVEKVLD 129
+ + G ++ ++K++ ++ V I++ N G G+ F+ F + V++ L
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKPVA---IRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 130 QKEHRLDGRVID---PKKAMAMKKDPVK-----------------------KIFVGGLNP 163
+ GR I+ K K P ++FV L
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 164 EATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
+TEE + + F ++G + + P+D K +GF FITF E K
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 33.1 bits (74), Expect = 0.29
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ V L ++ + F FG + DC++K + G+ R FGFI FK +K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQK 57
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 77.4 bits (189), Expect = 1e-14
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
+PME A E VP+GE+P GA ++A E ++ + EE
Sbjct: 678 EPMEKDPAEP---ETVPDGETPEDENP-TEEGADNSSAK--------MEEEEEEEEEEEE 725
Query: 68 DAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR---SRGFGFILFKDAA 122
+F+ L++DT+++ LK+ F+K G V C+I N S GFGF+ ++
Sbjct: 726 SLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPE 785
Query: 123 SVEKVLDQKE------HRLDGRVID---------PKKAMAMKKDPVKKIFVGGLNPEATE 167
+K L Q + H+L+ R+ + +K +K KI V + +A
Sbjct: 786 QAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHS 845
Query: 168 EKIREYFGEFGEIEAIELPMD-PKLNKRRGFVFITFKEEEPVKKVLEKKFHT 218
+IRE F FGE++ + LP RGF F+ F ++ K+ H+
Sbjct: 846 REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHS 897
Score = 47.8 bits (112), Expect = 1e-05
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 33/227 (14%)
Query: 11 ETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG 70
E + A E A P + G G G PP AE ++ K
Sbjct: 238 EGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEAR---AETEKPANQKEPTTCH 294
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT-GRSRGFGFILFKDAASVEKVLD 129
+ + G ++ ++K++ ++ V I++ N G G+ F+ F + V++ L
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKPVA---IRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 130 QKEHRLDGRVID---PKKAMAMKKDPVK-----------------------KIFVGGLNP 163
+ GR I+ K K P ++FV L
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 164 EATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
+TEE + + F ++G + + P+D K +GF FITF E K
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 33.1 bits (74), Expect = 0.29
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ V L ++ + F FG + DC++K + G+ R FGFI FK +K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQK 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,789,710
Number of Sequences: 37866
Number of extensions: 698418
Number of successful extensions: 14345
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 6776
Number of HSP's gapped (non-prelim): 4782
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.