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Search of human proteins with 55956919
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform
a [Homo sapiens]
(332 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 699 0.0
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 545 e-155
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 416 e-116
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 404 e-113
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 381 e-106
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 330 1e-90
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 318 4e-87
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 207 8e-54
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 203 2e-52
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 203 2e-52
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 199 3e-51
gi|20373175 musashi 2 isoform a [Homo sapiens] 194 9e-50
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 192 3e-49
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 192 3e-49
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 192 5e-49
gi|25121993 musashi 2 isoform b [Homo sapiens] 177 9e-45
gi|4505255 musashi 1 [Homo sapiens] 176 3e-44
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 171 8e-43
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 169 2e-42
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 169 2e-42
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 168 7e-42
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 162 5e-40
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 162 5e-40
gi|6678271 TAR DNA binding protein [Homo sapiens] 122 3e-28
gi|55956788 nucleolin [Homo sapiens] 84 1e-16
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 83 3e-16
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 83 3e-16
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 80 2e-15
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 80 2e-15
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 77 2e-14
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 699 bits (1803), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
Sbjct: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
Sbjct: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
Query: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
Sbjct: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
Query: 241 GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 300
GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY
Sbjct: 241 GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 300
Query: 301 YGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
YGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY
Sbjct: 301 YGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 545 bits (1403), Expect = e-155
Identities = 271/288 (94%), Positives = 274/288 (95%), Gaps = 4/288 (1%)
Query: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
Sbjct: 1 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI 60
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
Sbjct: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
Query: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
Sbjct: 121 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
Query: 241 GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGP 288
GSGGRGNRNRGNRGSGGGGGGGGQ + YG +G G+Q Y P
Sbjct: 241 GSGGRGNRNRGNRGSGGGGGGGGQGST---NYGKSQRRG-GHQNNYKP 284
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 416 bits (1068), Expect = e-116
Identities = 215/329 (65%), Positives = 251/329 (76%), Gaps = 22/329 (6%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
Query: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGS-GGRGNR 248
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE Y QQQQ+GS GG R
Sbjct: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
Query: 249 NRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYG----YQQGYGPGYGGYDYSPY-GYYGY 303
RG GGG SQ+WNQGY NYWNQGYG QGYG GYGGYDY+ Y YYGY
Sbjct: 260 ARGR--------GGGPSQNWNQGYSNYWNQGYGNYGYNSQGYG-GYGGYDYTGYNNYYGY 310
Query: 304 GPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
G DYS + YGK RRGGHQN+YKPY
Sbjct: 311 G---DYSNQQSGYGKVSRRGGHQNSYKPY 336
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 404 bits (1038), Expect = e-113
Identities = 215/348 (61%), Positives = 251/348 (72%), Gaps = 41/348 (11%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
Query: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
Query: 232 KEVY-QQQQYGS-GGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYG----YQQG 285
KE Y QQQQ+GS GG R RG GGG SQ+WNQGY NYWNQGYG QG
Sbjct: 260 KEQYQQQQQWGSRGGFAGRARGR--------GGGPSQNWNQGYSNYWNQGYGNYGYNSQG 311
Query: 286 YGPGYGGYDYSPY-GYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
YG GYGGYDY+ Y YYGYG DYS + YGK RRGGHQN+YKPY
Sbjct: 312 YG-GYGGYDYTGYNNYYGYG---DYSNQQSGYGKVSRRGGHQNSYKPY 355
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 381 bits (979), Expect = e-106
Identities = 192/290 (66%), Positives = 229/290 (78%), Gaps = 14/290 (4%)
Query: 55 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
Query: 115 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 173
F+LFKDAASV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
Query: 174 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
FG FGEIE IELPMD K N+RRGF FIT+ +EEPVKK+LE ++H + KCEIKVAQPKE
Sbjct: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
Query: 234 VY-QQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYG-YQQGYG---- 287
VY QQQQ GGRG G RG G G G GQ Q+WNQG+ NY++QGYG Y YG
Sbjct: 313 VYRQQQQQQKGGRG-AAAGGRG-GTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQN 370
Query: 288 -PGYGGYDYSPYGY--YGYGPGY-DYSQGSTNYGKSQRRGG-HQNNYKPY 332
GYGGYDY+ Y Y YGYG GY DYS + YGK+ R GG HQNNY+PY
Sbjct: 371 YSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 330 bits (845), Expect = 1e-90
Identities = 180/322 (55%), Positives = 212/322 (65%), Gaps = 57/322 (17%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
Query: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNR 250
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE YQQQQ G RG
Sbjct: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRG---- 254
Query: 251 GNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYS 310
G G G GG QS
Sbjct: 255 GFAGRARGRGGDQQS--------------------------------------------- 269
Query: 311 QGSTNYGKSQRRGGHQNNYKPY 332
YGK RRGGHQN+YKPY
Sbjct: 270 ----GYGKVSRRGGHQNSYKPY 287
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 318 bits (815), Expect = 4e-87
Identities = 180/341 (52%), Positives = 212/341 (62%), Gaps = 76/341 (22%)
Query: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
Query: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
Query: 232 KEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYG 291
KE YQQQQ G RG G G G GG QS
Sbjct: 260 KEQYQQQQQW-GSRG----GFAGRARGRGGDQQS-------------------------- 288
Query: 292 GYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
YGK RRGGHQN+YKPY
Sbjct: 289 -----------------------GYGKVSRRGGHQNSYKPY 306
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 207 bits (528), Expect = 8e-54
Identities = 114/302 (37%), Positives = 167/302 (55%), Gaps = 17/302 (5%)
Query: 47 PPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 106
P SG + G++ + K E K+F+GGLS++T+ L+++F K+G + DC + DP
Sbjct: 12 PDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQ 71
Query: 107 TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVG 159
T RSRGFGF+ + V+ + + H++DGRV++PK+A++ + VKKIFVG
Sbjct: 72 TKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVG 131
Query: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV 219
G+ + E +R+YF ++G+IE IE+ D + K+RGF F+TF + + V K++ +K+HT+
Sbjct: 132 GIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 191
Query: 220 SGSKCEIKVAQPKEVYQQ--QQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWN-QGYGNYW 276
+G CE+K A K+ Q Q G GG G+ N RG GGGGG + N G G Y
Sbjct: 192 NGHNCEVKKALSKQEMQSAGSQRGRGG-GSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYG 250
Query: 277 NQGYGYQQGYGPGYGGYD--YSPYGYYGYGPGYD----YSQGSTNYGKSQRRGGHQNNYK 330
G G + YG G GGY+ G YG GPGY Y G YG G Y
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYD 310
Query: 331 PY 332
Y
Sbjct: 311 GY 312
Score = 50.8 bits (120), Expect = 2e-06
Identities = 36/87 (41%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 240 YGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQG-------YGYQQ--GYGPGY 290
YG GG G N+G G GGGGG G ++ N G GNY G Y QQ YGP
Sbjct: 289 YGGGGPGYGNQGG-GYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMK 347
Query: 291 GGYDYSPYGYYGYGPGYDYSQGSTNYG 317
GG YG GY GS YG
Sbjct: 348 GGSFGGRSSGSPYGGGYGSGGGSGGYG 374
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 203 bits (517), Expect = 2e-52
Identities = 107/299 (35%), Positives = 171/299 (57%), Gaps = 37/299 (12%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
+ +E K+F+GGLS++T+++ L++Y+ ++G++ DC + DP + RSRGFGF+ F A
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVGGLNPEATEEKIREYFGE 176
V+ + + H +DGRV++PK+A+A ++ VKK+FVGG+ + E +R+YF E
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+I+ IE+ D + K+RGF F+TF + +PV K++ +K+HT++G E++ A ++ Q
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYW---NQGYGYQQGYGPGYGGY 293
+ Q GRG GN G G GGGG ++ G G+ + + GYG +G+G GY GY
Sbjct: 195 EVQSSRSGRG----GNFGFGDSRGGGG---NFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Query: 294 DYSP---------------YGYYGYGPGY-----DYSQGSTNYGKSQRRGGHQNNYKPY 332
P GY G GPGY Y G NYG G+ N++ Y
Sbjct: 248 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 306
Score = 63.2 bits (152), Expect = 3e-10
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 142 PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFIT 201
P + +K+ +K+F+GGL+ E TEE +R Y+ ++G++ + DP + RGF F+T
Sbjct: 9 PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68
Query: 202 FKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
F V + + H++ G +V +PK +++ G G
Sbjct: 69 FSSMAEVDAAMAARPHSIDG-----RVVEPKRAVAREESGKPG 106
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/89 (41%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 240 YGSGGRGNRNRGNRGSGGGGG----GGGQSQSWNQG-YGNYWNQGYGYQQGYGPGYGGYD 294
YG GG G GN+G G GGG GGG S N +GNY Q Y +GG
Sbjct: 269 YGGGGPGY---GNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 325
Query: 295 Y--SPYGYYGYGPGYDYSQGSTNYGKSQR 321
PYG YGPG S GS YG R
Sbjct: 326 NMGGPYGGGNYGPG--GSGGSGGYGGRSR 352
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 203 bits (517), Expect = 2e-52
Identities = 107/299 (35%), Positives = 171/299 (57%), Gaps = 37/299 (12%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
+ +E K+F+GGLS++T+++ L++Y+ ++G++ DC + DP + RSRGFGF+ F A
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKD-------PVKKIFVGGLNPEATEEKIREYFGE 176
V+ + + H +DGRV++PK+A+A ++ VKK+FVGG+ + E +R+YF E
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+I+ IE+ D + K+RGF F+TF + +PV K++ +K+HT++G E++ A ++ Q
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYW---NQGYGYQQGYGPGYGGY 293
+ Q GRG GN G G GGGG ++ G G+ + + GYG +G+G GY GY
Sbjct: 183 EVQSSRSGRG----GNFGFGDSRGGGG---NFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
Query: 294 DYSP---------------YGYYGYGPGY-----DYSQGSTNYGKSQRRGGHQNNYKPY 332
P GY G GPGY Y G NYG G+ N++ Y
Sbjct: 236 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNY 294
Score = 63.5 bits (153), Expect = 2e-10
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 146 MAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEE 205
M +K+ +K+F+GGL+ E TEE +R Y+ ++G++ + DP + RGF F+TF
Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
Query: 206 EPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGG 244
V + + H++ G +V +PK +++ G G
Sbjct: 61 AEVDAAMAARPHSIDG-----RVVEPKRAVAREESGKPG 94
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/89 (41%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 240 YGSGGRGNRNRGNRGSGGGGG----GGGQSQSWNQG-YGNYWNQGYGYQQGYGPGYGGYD 294
YG GG G GN+G G GGG GGG S N +GNY Q Y +GG
Sbjct: 257 YGGGGPGY---GNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 313
Query: 295 Y--SPYGYYGYGPGYDYSQGSTNYGKSQR 321
PYG YGPG S GS YG R
Sbjct: 314 NMGGPYGGGNYGPG--GSGGSGGYGGRSR 340
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 199 bits (506), Expect = 3e-51
Identities = 106/279 (37%), Positives = 161/279 (57%), Gaps = 21/279 (7%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K+ +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ--E 185
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQ-------SWNQGYGNYWNQGYGYQQGYGPG 289
S RG GN G G GGG GG S G+G ++G G G G G
Sbjct: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGG--SRGGGGYGGSGDG 243
Query: 290 YGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNN 328
Y G+ + GY G GPG YS GS YG + G+Q +
Sbjct: 244 YNGFG-NDGGYGGGGPG--YSGGSRGYGSGGQGYGNQGS 279
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
Score = 53.5 bits (127), Expect = 3e-07
Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 235 YQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQG----YGNYWNQGYGYQQGYGPGY 290
Y Q G GG G+ + N G GGG GGG S G +GNY NQ + G +
Sbjct: 274 YGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNF 333
Query: 291 GGYDYSPYGYYGY-------GPGYDYSQGSTNYGKSQR 321
GG PYG G GY S S++YG +R
Sbjct: 334 GGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRR 371
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 194 bits (493), Expect = 9e-50
Identities = 110/259 (42%), Positives = 145/259 (55%), Gaps = 17/259 (6%)
Query: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
NG++G +A+ ++ D GKMF+GGLSW TS L+DYF+KFGE+ +C + DP T RSRG
Sbjct: 4 NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
Query: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATE 167
FGF+ F D ASV+KVL Q H LD + IDPK A + P KKIFVGGL+
Sbjct: 64 FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
E +++YF +FG++E L D N+ RGF F+TF+ E+ V+KV E FH ++ E K
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 228 VAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNY-WNQGYGYQQGY 286
AQPKEV + G RG G G GY N+ G GY G+
Sbjct: 184 KAQPKEV----MFPPGTRGRARGLPYTMDAFMLGMGM-----LGYPNFVATYGRGY-PGF 233
Query: 287 GPGYGGYDYSPYGYYGYGP 305
P Y GY + + YGP
Sbjct: 234 APSY-GYQFPGFPAAAYGP 251
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 192 bits (488), Expect = 3e-49
Identities = 102/275 (37%), Positives = 158/275 (57%), Gaps = 14/275 (5%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV G CE++ A PK+ +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296
S RG R GN G G G G GG + ++ +G GN+ +G G+ G G GGY S
Sbjct: 186 MASASSSQRGRRGSGNFGGGRGDGFGG-NDNFGRG-GNFSGRG-GF--GGSCGGGGYGGS 240
Query: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
GY G+G G +Y +N+ P
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K A + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 192 bits (488), Expect = 3e-49
Identities = 102/275 (37%), Positives = 158/275 (57%), Gaps = 14/275 (5%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV G CE++ A PK+ +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQ--E 185
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296
S RG R GN G G G G GG + ++ +G GN+ +G G+ G G GGY S
Sbjct: 186 MASASSSQRGRRGSGNFGGGRGDGFGG-NDNFGRG-GNFSGRG-GF--GGSCGGGGYGGS 240
Query: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
GY G+G G +Y +N+ P
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K A + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 192 bits (487), Expect = 5e-49
Identities = 102/276 (36%), Positives = 161/276 (58%), Gaps = 16/276 (5%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K+ +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ--E 185
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQ-GYGYQQGYGPGYGGYDY 295
S RG GN G G GGG GG + ++ +G GN+ + G+G +G G GYGG
Sbjct: 186 MASASSSQRGRSGSGNFGGGRGGGFGG-NDNFGRG-GNFSGRGGFGGSRG-GGGYGG--- 239
Query: 296 SPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
S GY G+G G +Y +N+ P
Sbjct: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
E V + + H V G E K A +E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 177 bits (450), Expect = 9e-45
Identities = 102/236 (43%), Positives = 131/236 (55%), Gaps = 17/236 (7%)
Query: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
+ KMF+GGLSW TS L+DYF+KFGE+ +C + DP T RSRGFGF+ F D ASV+KVL
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 129 DQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
Q H LD + IDPK A + P KKIFVGGL+ E +++YF +FG++E
Sbjct: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSG 243
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV + G
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEV----MFPPG 191
Query: 244 GRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNY-WNQGYGYQQGYGPGYGGYDYSPY 298
RG G G GY N+ G GY G+ P Y GY + Y
Sbjct: 192 TRGRARGLPYTMDAFMLGMGM-----LGYPNFVATYGRGY-PGFAPSY-GYQFPDY 240
Score = 65.9 bits (159), Expect = 5e-11
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
P K+F+GGL+ + + + +R+YF +FGEI + DP + RGF F+TF + V KV
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 212 LEKKFHTVSGSKCEIKV-----AQPKEVYQQQQYGSGG 244
L + H + + KV AQPK V + ++ GG
Sbjct: 75 LGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGG 112
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 176 bits (445), Expect = 3e-44
Identities = 100/247 (40%), Positives = 133/247 (53%), Gaps = 28/247 (11%)
Query: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
D KMF+GGLSW T+++ L++YF +FGEV +C + DP T RSRGFGF+ F D A V+KV
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 128 LDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEA 182
L Q H LD + IDPK A + P KKIFVGGL+ T E +++YF +FG+++
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 183 IELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT---- 193
Query: 243 GGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG 302
G G+S+ G + G G GY PG+ Y+ Y G
Sbjct: 194 ----------------GSARGRSRVMPYGMDAFM-LGIG-MLGY-PGFQATTYASRSYTG 234
Query: 303 YGPGYDY 309
PGY Y
Sbjct: 235 LAPGYTY 241
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 171 bits (433), Expect = 8e-43
Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 12/266 (4%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
K+F+GGL+ TS+ L+ +F FG + DC + ++P T RSR FGF+ + + + +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 131 KEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
H +DG ++ K+A++ + VKK+FVGGL + E + E+F +FG +E
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSG 243
E+ D + K+RGF F+ F+ + K KFH + G + E+K A PKE G G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
Query: 244 GRGNR-NRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG 302
R +R RG RG GGG G S+ GY +Y G G GY GG S YG
Sbjct: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSD 247
Query: 303 YGPGY----DYSQGSTNYGKSQRRGG 324
YG G+ YSQ ++YG + GG
Sbjct: 248 YGNGFGGFGSYSQHQSSYGPMKSGGG 273
Score = 52.0 bits (123), Expect = 7e-07
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 148 MKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP 207
M+ + K+F+GGLN + +E +R +F FG + + ++P+ + R F F+T+ E
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 208 VKKVLEKKFHTVSGSKCEIKVAQPKE 233
+ H V G+ E+K A +E
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSRE 86
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 169 bits (429), Expect = 2e-42
Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 19/275 (6%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ +
Sbjct: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ +
Sbjct: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296
Q+ S R+R G+ GGG GGG S + N G+G ++ G G G+G +GG S
Sbjct: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFS-GCG---GFGGSHGG---S 235
Query: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
GY G+G G ++Y +N+ P
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGP 270
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 169 bits (429), Expect = 2e-42
Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 19/275 (6%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ +
Sbjct: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ +
Sbjct: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296
Q+ S R+R G+ GGG GGG S + N G+G ++ G G G+G +GG S
Sbjct: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFS-GCG---GFGGSHGG---S 235
Query: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
GY G+G G ++Y +N+ P
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGP 270
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 168 bits (425), Expect = 7e-42
Identities = 91/275 (33%), Positives = 149/275 (54%), Gaps = 19/275 (6%)
Query: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ +
Sbjct: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
Query: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ +
Sbjct: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
Query: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
+G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K
Sbjct: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
Query: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296
Q+ S R+R G+ GGG GGG S + N G+G ++ G G G G +GG S
Sbjct: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFS-GCG---GLGGSHGG---S 235
Query: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
GY G+G G ++Y +N+ P
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGP 270
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 162 bits (409), Expect = 5e-40
Identities = 94/254 (37%), Positives = 130/254 (51%), Gaps = 26/254 (10%)
Query: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ GK+FVGGL W T+++ L+ YF+++GEVVDC I D T +SRGFGF+ FKD V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167
VL + H LDGR IDPK P + KIFVGG+ E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
++REYF +FG + + + D + + RGF FITF++E+ V + + FH + G K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYG--NYWNQGYGYQ 283
A+P++ Q Q G+ G+R N G G +W QGYG W
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPN---AANGWAGQPPPTWQQGYGPQGMWVPAGQAI 243
Query: 284 QGYGPGYGGYDYSP 297
GYGP G P
Sbjct: 244 GGYGPPPAGRGAPP 257
Score = 65.1 bits (157), Expect = 8e-11
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
EG Q + + K+FVGG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145
I F+D SV++ ++ H + G+ ++ K+A
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 162 bits (409), Expect = 5e-40
Identities = 94/254 (37%), Positives = 130/254 (51%), Gaps = 26/254 (10%)
Query: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ GK+FVGGL W T+++ L+ YF+++GEVVDC I D T +SRGFGF+ FKD V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167
VL + H LDGR IDPK P + KIFVGG+ E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
++REYF +FG + + + D + + RGF FITF++E+ V + + FH + G K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYG--NYWNQGYGYQ 283
A+P++ Q Q G+ G+R N G G +W QGYG W
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPN---AANGWAGQPPPTWQQGYGPQGMWVPAGQAI 243
Query: 284 QGYGPGYGGYDYSP 297
GYGP G P
Sbjct: 244 GGYGPPPAGRGAPP 257
Score = 65.1 bits (157), Expect = 8e-11
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
EG Q + + K+FVGG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145
I F+D SV++ ++ H + G+ ++ K+A
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 122 bits (307), Expect = 3e-28
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 19/242 (7%)
Query: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
+ + + + V GL W T+++DLK+YF+ FGEV+ +K D TG S+GFGF+ F
Sbjct: 94 VKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 153
Query: 120 DAASVEKVLDQKEHRLDGRVIDPK--KAMAMKKDPV--KKIFVGGLNPEATEEKIREYFG 175
+ + KV+ Q+ H +DGR D K + + +P+ +K+FVG + TE+++RE+F
Sbjct: 154 EYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 176 EFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY 235
++G++ + +P R F F+TF +++ + + + + G I A+PK
Sbjct: 213 QYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDL-IIKGISVHISNAEPKHNS 266
Query: 236 QQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDY 295
+Q SG G GN G G GG G S+ G GN NQ G G G +G +
Sbjct: 267 NRQLERSGRFG----GNPGGFGNQGGFGNSRGGGAGLGN--NQ--GSNMGGGMNFGAFSI 318
Query: 296 SP 297
+P
Sbjct: 319 NP 320
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 84.3 bits (207), Expect = 1e-16
Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 32/256 (12%)
Query: 56 EGDQINASKNEEDAGK---MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-TGRSR 111
+ KN +G+ + + LS+ +++ L++ F K IK+ N G+S+
Sbjct: 469 QNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA-----TFIKVPQNQNGKSK 523
Query: 112 GFGFILFKDAASVEKVLDQKEHR-LDGRVI-----DPKKAMAMKKDPVKKIFVGGLNPEA 165
G+ FI F ++ L+ R ++GR I P+ + + P K +FV GL+ +
Sbjct: 524 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDT 583
Query: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
TEE ++E F G + A + D + +GF F+ F EE K E + + G+K
Sbjct: 584 TEETLKESFD--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 640
Query: 225 EIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQ 284
+ A+PK G GG G R G GG GG G + G+G G+G +
Sbjct: 641 TLDWAKPK--------GEGGFGGRGGGR----GGFGGRGGGRGGRGGFGGRGRGGFGGRG 688
Query: 285 GYGPGY-GGYDYSPYG 299
G+ G GG D+ P G
Sbjct: 689 GFRGGRGGGGDHKPQG 704
Score = 63.2 bits (152), Expect = 3e-10
Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 16/241 (6%)
Query: 6 EEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKN 65
+++ E ++ E E E P G A P + EG + + N
Sbjct: 249 DDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFN 308
Query: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
+FVG L+++ S +LK + D + +D G +R FG++ F+ A +E
Sbjct: 309 ------LFVGNLNFNKSAPELKTGISDVFAKNDLAV-VDVRIGMTRKFGYVDFESAEDLE 361
Query: 126 KVLDQKEHRLDGRVI---DPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEA 182
K L+ ++ G I PK + K+ + + L + T+++++E F + EI
Sbjct: 362 KALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRL 421
Query: 183 IELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
+ K K +G +I FK E +K E+K T + I + E Q Q Y
Sbjct: 422 VS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR-SISLYYTGEKGQNQDYRG 475
Query: 243 G 243
G
Sbjct: 476 G 476
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 83.2 bits (204), Expect = 3e-16
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
N + E DA +F L+ +DL+++F+ G+V D + D N+ RS+G ++ F D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 121 AASVEKVLDQKEHRLDGRVI-------DPKKAMAMKKDPVK------KIFVGGLNPEATE 167
+SV + R+ G I + +A AM + K +++VG L+ TE
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
+ +R F FG IE+I+L MD + + +G+ FITF + E KK LE+
Sbjct: 264 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 52 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 111
+N A N K +++VG L ++ ++ L+ F FG + + MD TGRS+
Sbjct: 232 KNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 112 GFGFILFKDAASVEKVLDQ 130
G+GFI F D+ +K L+Q
Sbjct: 292 GYGFITFSDSECAKKALEQ 310
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 83.2 bits (204), Expect = 3e-16
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 120
N + E DA +F L+ +DL+++F+ G+V D + D N+ RS+G ++ F D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 121 AASVEKVLDQKEHRLDGRVI-------DPKKAMAMKKDPVK------KIFVGGLNPEATE 167
+SV + R+ G I + +A AM + K +++VG L+ TE
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
+ +R F FG IE+I+L MD + + +G+ FITF + E KK LE+
Sbjct: 264 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 52 QNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 111
+N A N K +++VG L ++ ++ L+ F FG + + MD TGRS+
Sbjct: 232 KNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 112 GFGFILFKDAASVEKVLDQ 130
G+GFI F D+ +K L+Q
Sbjct: 292 GYGFITFSDSECAKKALEQ 310
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 80.5 bits (197), Expect = 2e-15
Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 42/265 (15%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDPNTGR-SRGFGFILFKD---AASVE 125
++FVG + + +K+++ + F+K E +VD + P+ + +RGF F+ ++D AA
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205
Query: 126 KVLDQKEHRLDGRVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKIREYFGEFGE 179
+ L + ++ G V+ + A +++ DP VK +FV L TEE + + F EFG+
Sbjct: 206 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 265
Query: 180 IEAIELPMDPKLNKRRGFVFITFKEE-EPVKKVLEKKFHTVSGSKCEIKVAQPKE----- 233
+E ++ K + + F+ F++ VK + E + G + EI +A+P +
Sbjct: 266 LE--------RVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 317
Query: 234 -----------VYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGY 282
Y+ Y R RG GGG GG G + GY +Y++ YGY
Sbjct: 318 RQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDY-YGYEDYYDDYYGY 376
Query: 283 QQGYGPGYGGYDYSPYGYYGYGPGY 307
Y GGY+ YYGY GY
Sbjct: 377 D--YHDYRGGYEDP---YYGYDDGY 396
Score = 54.7 bits (130), Expect = 1e-07
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF--KDAA-SVEKV 127
++FVG + D + +L F K G + D + MDP +G++RG+ FI F K+AA K+
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 128 LDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEF--GEIEAIEL 185
D E R G+ + ++A ++FVG + T+E I E F + G ++ I
Sbjct: 125 CDSYEIR-PGKHLGVCISVAN-----NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 178
Query: 186 PMDPKLNKRRGFVFITFKEEE 206
K RGF F+ +++ +
Sbjct: 179 HQPDDKKKNRGFCFLEYEDHK 199
Score = 37.4 bits (85), Expect = 0.019
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
++FVG + + E+++ F + G I + L MDP + RG+ FITF +E ++ ++
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
Score = 32.7 bits (73), Expect = 0.46
Identities = 29/71 (40%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 237 QQQYGSGGRGNRNRGNRGSGGGG----GGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGG 292
QQQ G G RG +RGNRG GG G Q S + N N G P G
Sbjct: 450 QQQRGRGSRG--SRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWG-SQPIAQQPLQQG 506
Query: 293 YDYSPYGYYGY 303
DYS G YGY
Sbjct: 507 GDYS--GNYGY 515
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 80.5 bits (197), Expect = 2e-15
Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 42/265 (15%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDPNTGR-SRGFGFILFKD---AASVE 125
++FVG + + +K+++ + F+K E +VD + P+ + +RGF F+ ++D AA
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 126 KVLDQKEHRLDGRVIDPKKAMAMKK-DP-----VKKIFVGGLNPEATEEKIREYFGEFGE 179
+ L + ++ G V+ + A +++ DP VK +FV L TEE + + F EFG+
Sbjct: 307 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366
Query: 180 IEAIELPMDPKLNKRRGFVFITFKEE-EPVKKVLEKKFHTVSGSKCEIKVAQPKE----- 233
+E ++ K + + F+ F++ VK + E + G + EI +A+P +
Sbjct: 367 LE--------RVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 418
Query: 234 -----------VYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGY 282
Y+ Y R RG GGG GG G + GY +Y++ YGY
Sbjct: 419 RQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDY-YGYEDYYDDYYGY 477
Query: 283 QQGYGPGYGGYDYSPYGYYGYGPGY 307
Y GGY+ YYGY GY
Sbjct: 478 D--YHDYRGGYEDP---YYGYDDGY 497
Score = 54.7 bits (130), Expect = 1e-07
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF--KDAA-SVEKV 127
++FVG + D + +L F K G + D + MDP +G++RG+ FI F K+AA K+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 128 LDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEF--GEIEAIEL 185
D E R G+ + ++A ++FVG + T+E I E F + G ++ I
Sbjct: 226 CDSYEIR-PGKHLGVCISVAN-----NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 279
Query: 186 PMDPKLNKRRGFVFITFKEEE 206
K RGF F+ +++ +
Sbjct: 280 HQPDDKKKNRGFCFLEYEDHK 300
Score = 37.4 bits (85), Expect = 0.019
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
++FVG + + E+++ F + G I + L MDP + RG+ FITF +E ++ ++
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224
Score = 32.7 bits (73), Expect = 0.46
Identities = 29/71 (40%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 237 QQQYGSGGRGNRNRGNRGSGGGG----GGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGG 292
QQQ G G RG +RGNRG GG G Q S + N N G P G
Sbjct: 551 QQQRGRGSRG--SRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWG-SQPIAQQPLQQG 607
Query: 293 YDYSPYGYYGY 303
DYS G YGY
Sbjct: 608 GDYS--GNYGY 616
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 77.4 bits (189), Expect = 2e-14
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
+PME A E VP+GE+P GA ++A E ++ + EE
Sbjct: 678 EPMEKDPAEP---ETVPDGETPEDENP-TEEGADNSSAK--------MEEEEEEEEEEEE 725
Query: 68 DAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR---SRGFGFILFKDAA 122
+F+ L++DT+++ LK+ F+K G V C+I N S GFGF+ ++
Sbjct: 726 SLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPE 785
Query: 123 SVEKVLDQKE------HRLDGRVID---------PKKAMAMKKDPVKKIFVGGLNPEATE 167
+K L Q + H+L+ R+ + +K +K KI V + +A
Sbjct: 786 QAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHS 845
Query: 168 EKIREYFGEFGEIEAIELPMD-PKLNKRRGFVFITFKEEEPVKKVLEKKFHT 218
+IRE F FGE++ + LP RGF F+ F ++ K+ H+
Sbjct: 846 REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHS 897
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/287 (19%), Positives = 100/287 (34%), Gaps = 37/287 (12%)
Query: 11 ETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG 70
E + A E A P + G G G PP AE ++ K
Sbjct: 238 EGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEAR---AETEKPANQKEPTTCH 294
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT-GRSRGFGFILFKDAASVEKVLD 129
+ + G ++ ++K++ ++ V I++ N G G+ F+ F + V++ L
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKPVA---IRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 130 QKEHRLDGRVID---PKKAMAMKKDPVK-----------------------KIFVGGLNP 163
+ GR I+ K K P ++FV L
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 164 EATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLEKKFHTVSGS 222
+TEE + + F ++G + + P+D K +GF FITF E VK E G
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGR 471
Query: 223 KCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWN 269
+ P + ++ + G+ + + S +WN
Sbjct: 472 MLHV---LPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWN 515
Score = 33.1 bits (74), Expect = 0.35
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
++ V L ++ + F FG + DC++K + G+ R FGFI FK +K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQK 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,825,854
Number of Sequences: 37866
Number of extensions: 909977
Number of successful extensions: 14484
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 6620
Number of HSP's gapped (non-prelim): 3903
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.