Guide to the Human Genome
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Name: LOC100290415 Sequence: fasta or formatted (120aa) NCBI GI: 239750758
Description:

PREDICTED: hypothetical protein XP_002347493

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         11           3
 C cysteine            2.5          3           1
 D aspartate           5.8          7           1
 E glutamate           6.7          8           1
 F phenylalanine       2.5          3           1
 G glycine             8.3         10           2
 H histidine           1.7          2           1
 I isoleucine          1.7          2           1
 K lysine              5.0          6           2
 L leucine             6.7          8           1
 M methionine          4.2          5           1
 N asparagine          0.0          0           0
 P proline             2.5          3           1
 Q glutamine           5.0          6           1
 R arginine            3.3          4           1
 S serine              7.5          9           2
 T threonine          11.7         14           1
 V valine              9.2         11           1
 W tryptophan          2.5          3           1
 Y tyrosine            4.2          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347493 
LOC100130811          0.887   PREDICTED: similar to hCG2038921 
LOC100130811          0.887   PREDICTED: similar to hCG2038921 
LOC100292483          0.743   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100292611          0.743   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.743   PREDICTED: hypothetical protein XP_002347494 
LOC100290528          0.743   PREDICTED: hypothetical protein XP_002347495 
LOC100133862          0.712   PREDICTED: similar to hCG1773549 
LOC100291567          0.550   PREDICTED: similar to hCG2029980 
LOC100291160          0.550   PREDICTED: hypothetical protein XP_002347528 
LOC100290146          0.505   PREDICTED: hypothetical protein XP_002347524 
LOC652494             0.464   PREDICTED: similar to hCG2042717 
LOC100293270          0.455   PREDICTED: similar to hCG2042717 
LOC100290320          0.455   PREDICTED: hypothetical protein XP_002347525 
LOC100291056          0.446   PREDICTED: hypothetical protein XP_002347527 
LOC100289290          0.437   PREDICTED: hypothetical protein XP_002343511 
LOC100290036          0.432   PREDICTED: hypothetical protein XP_002347522 
LOC100132941          0.432   PREDICTED: similar to Ig heavy chain 
LOC100291190          0.428   PREDICTED: hypothetical protein XP_002347529 
LOC100290738          0.428   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.428   PREDICTED: hypothetical protein XP_002343513 
LOC100132941          0.423   PREDICTED: similar to Ig heavy chain 
LOC100293211          0.423   PREDICTED: similar to hCG2042717 
LOC100292999          0.423   PREDICTED: hypothetical protein 
LOC100290115          0.405   PREDICTED: hypothetical protein XP_002347523 
LOC401847             0.405   PREDICTED: similar to hCG1793095 
LOC646057             0.369   PREDICTED: similar to hCG2003024 
LOC646057             0.369   PREDICTED: similar to hCG2003024 
LOC646057             0.365   PREDICTED: similar to hCG2003024 
LOC100292858          0.315   PREDICTED: similar to hCG2029977 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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