Guide to the Human Genome
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Name: VPRBP Sequence: fasta or formatted (1507aa) NCBI GI: 7662316
Description:

HIV-1 Vpr binding protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        105           3
 C cysteine            2.1         31           2
 D aspartate           7.4        111           4
 E glutamate           7.8        117           4
 F phenylalanine       3.9         59           2
 G glycine             5.2         79           2
 H histidine           2.7         40           1
 I isoleucine          5.2         78           3
 K lysine              4.5         68           2
 L leucine            11.2        169           4
 M methionine          2.7         40           2
 N asparagine          4.2         63           2
 P proline             5.1         77           2
 Q glutamine           4.4         66           2
 R arginine            5.3         80           2
 S serine              7.6        115           3
 T threonine           5.2         79           2
 V valine              5.4         82           3
 W tryptophan          0.8         12           1
 Y tyrosine            2.4         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HIV-1 Vpr binding protein 
NCL                   0.014   nucleolin 
ANP32B                0.012   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
MYT1L                 0.012   myelin transcription factor 1-like 
SETD1B                0.012   SET domain containing 1B 
CENPB                 0.012   centromere protein B 
UBTF                  0.012   upstream binding transcription factor, RNA polymera...
UBTF                  0.012   upstream binding transcription factor, RNA polymera...
UBTF                  0.012   upstream binding transcription factor, RNA polymerase...
LOC647020             0.012   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.012   PREDICTED: similar to acidic (leucine-rich) nuclear...
APLP2                 0.012   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.012   amyloid beta (A4) precursor-like protein 2 isoform 1 ...
APLP2                 0.012   amyloid beta (A4) precursor-like protein 2 isoform ...
HUWE1                 0.011   HECT, UBA and WWE domain containing 1 
PELP1                 0.011   proline, glutamic acid and leucine rich protein 1 [...
DAXX                  0.010   death-domain associated protein isoform a 
DAXX                  0.010   death-domain associated protein isoform a 
DAXX                  0.010   death-domain associated protein isoform b 
MYT1                  0.010   myelin transcription factor 1 
SUPT5H                0.010   suppressor of Ty 5 homolog isoform b 
TPR                   0.010   nuclear pore complex-associated protein TPR 
ACRC                  0.010   ACRC protein 
MTERFD2               0.009   MTERF domain containing 2 
ZBTB7C                0.009   zinc finger and BTB domain containing 7C 
PAF1                  0.009   Paf1, RNA polymerase II associated factor, homolog [...
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
ANP32E                0.009   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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