Guide to the Human Genome
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Name: C10orf72 Sequence: fasta or formatted (191aa) NCBI GI: 21450677
Description:

hypothetical protein LOC196740 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {320aa} hypothetical protein LOC196740 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         21           4
 C cysteine            1.6          3           1
 D aspartate           2.6          5           1
 E glutamate           4.7          9           2
 F phenylalanine       3.7          7           2
 G glycine             4.7          9           1
 H histidine           3.1          6           1
 I isoleucine          1.6          3           1
 K lysine              3.1          6           1
 L leucine            13.6         26           2
 M methionine          2.6          5           1
 N asparagine          2.6          5           1
 P proline             4.2          8           1
 Q glutamine           4.2          8           1
 R arginine            9.4         18           3
 S serine             10.5         20           2
 T threonine           4.2          8           1
 V valine              8.4         16           2
 W tryptophan          1.6          3           1
 Y tyrosine            2.6          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC196740 isoform 2 
C10orf72              0.801   hypothetical protein LOC196740 isoform 1 
IGSF3                 0.060   immunoglobulin superfamily, member 3 isoform 1 [Homo...
IGSF3                 0.060   immunoglobulin superfamily, member 3 isoform 2 [Homo...
IGSF2                 0.045   immunoglobulin superfamily, member 2 
ASAM                  0.028   adipocyte-specific adhesion molecule 
OBSCN                 0.023   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.023   obscurin, cytoskeletal calmodulin and titin-interac...
BTN2A1                0.020   butyrophilin, subfamily 2, member A1 isoform 1 precur...
BTN2A1                0.020   butyrophilin, subfamily 2, member A1 isoform 2 precu...
BCAN                  0.020   brevican isoform 2 
BCAN                  0.020   brevican isoform 1 
VSIG1                 0.020   V-set and immunoglobulin domain containing 1 
LOC100292114          0.020   PREDICTED: similar to immunoglobulin superfamily, m...
BTN2A2                0.020   butyrophilin, subfamily 2, member A2 isoform a 
PTGFRN                0.020   prostaglandin F2 receptor negative regulator 
BTNL2                 0.014   butyrophilin-like 2 
FLT4                  0.014   fms-related tyrosine kinase 4 isoform 1 precursor [...
FLT4                  0.014   fms-related tyrosine kinase 4 isoform 2 precursor [...
FCRL3                 0.014   Fc receptor-like 3 precursor 
DKK3                  0.014   dickkopf homolog 3 precursor 
DKK3                  0.014   dickkopf homolog 3 precursor 
DKK3                  0.014   dickkopf homolog 3 precursor 
CXADR                 0.011   coxsackie virus and adenovirus receptor precursor [Ho...
CADM1                 0.011   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.011   immunoglobulin superfamily, member 4D isoform 1 [Ho...
RBM14                 0.011   RNA binding motif protein 14 
NCR3                  0.011   natural cytotoxicity triggering receptor 3 isoform ...
NCR3                  0.011   natural cytotoxicity triggering receptor 3 isoform a...
NCR3                  0.011   natural cytotoxicity triggering receptor 3 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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