Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 55743157
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens]
(326 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens] 685 0.0
gi|55743159 WD repeat domain 33 isoform 3 [Homo sapiens] 441 e-124
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 441 e-124
gi|53729352 WD repeat-containing protein 1 isoform 2 [Homo sapiens] 44 3e-04
gi|9257257 WD repeat-containing protein 1 isoform 1 [Homo sapiens] 44 3e-04
gi|13376840 WD repeat domain 61 [Homo sapiens] 44 3e-04
gi|189571685 WD repeat, sterile alpha motif and U-box domain con... 41 0.001
gi|189571683 WD repeat, sterile alpha motif and U-box domain con... 41 0.001
gi|189571681 WD repeat, sterile alpha motif and U-box domain con... 41 0.001
gi|124256480 APG16 autophagy 16-like isoform 1 [Homo sapiens] 39 0.006
gi|124256478 APG16 autophagy 16-like isoform 2 [Homo sapiens] 39 0.006
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens] 39 0.006
gi|21071067 TBP-associated factor 5 [Homo sapiens] 39 0.008
gi|134133292 WD repeat domain 27 [Homo sapiens] 37 0.018
gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens] 37 0.031
gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens] 37 0.031
gi|22749275 CDC20 cell division cycle 20 homolog B isoform 1 [Ho... 37 0.031
gi|224593764 CDC20 cell division cycle 20 homolog B isoform 2 [H... 37 0.031
gi|19913369 transducin beta-like 3 [Homo sapiens] 37 0.031
gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo ... 36 0.053
gi|21536371 telomerase-associated protein 1 [Homo sapiens] 35 0.069
gi|5803221 WD repeat-containing protein 3 [Homo sapiens] 35 0.069
gi|62422577 neurobeachin [Homo sapiens] 35 0.069
gi|62234461 Notchless gene homolog isoform a [Homo sapiens] 35 0.069
gi|199559532 Abelson helper integration site 1 isoform b [Homo s... 35 0.091
gi|199559490 Abelson helper integration site 1 isoform a [Homo s... 35 0.091
gi|199559438 Abelson helper integration site 1 isoform a [Homo s... 35 0.091
gi|31542701 Abelson helper integration site 1 isoform a [Homo sa... 35 0.091
gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens] 35 0.091
gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens] 35 0.091
>gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens]
Length = 326
Score = 685 bits (1767), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN 60
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
Sbjct: 1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN 60
Query: 61 PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC 120
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
Sbjct: 61 PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC 120
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
Sbjct: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
Query: 181 HGGYVKYWQSNMNNVKMFQAHKEAIREARFIHNIPFSVVPIVMVKLFSKCILGAEMHGLC 240
HGGYVKYWQSNMNNVKMFQAHKEAIREARFIHNIPFSVVPIVMVKLFSKCILGAEMHGLC
Sbjct: 181 HGGYVKYWQSNMNNVKMFQAHKEAIREARFIHNIPFSVVPIVMVKLFSKCILGAEMHGLC 240
Query: 241 QFLGNFLHPINTIFFFVFTHSPFCWHLSEVVLSRYQPLQYVRDVLSAAFCTGFLFSFMIN 300
QFLGNFLHPINTIFFFVFTHSPFCWHLSEVVLSRYQPLQYVRDVLSAAFCTGFLFSFMIN
Sbjct: 241 QFLGNFLHPINTIFFFVFTHSPFCWHLSEVVLSRYQPLQYVRDVLSAAFCTGFLFSFMIN 300
Query: 301 NVYTLFLFIIYCVRQEYFIPNKEFSL 326
NVYTLFLFIIYCVRQEYFIPNKEFSL
Sbjct: 301 NVYTLFLFIIYCVRQEYFIPNKEFSL 326
>gi|55743159 WD repeat domain 33 isoform 3 [Homo sapiens]
Length = 257
Score = 441 bits (1135), Expect = e-124
Identities = 209/210 (99%), Positives = 209/210 (99%)
Query: 1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN 60
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
Sbjct: 1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN 60
Query: 61 PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC 120
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
Sbjct: 61 PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC 120
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
Sbjct: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
Query: 181 HGGYVKYWQSNMNNVKMFQAHKEAIREARF 210
HGGYVKYWQSNMNNVKMFQAHKEAIREA F
Sbjct: 181 HGGYVKYWQSNMNNVKMFQAHKEAIREASF 210
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 441 bits (1135), Expect = e-124
Identities = 209/210 (99%), Positives = 209/210 (99%)
Query: 1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN 60
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
Sbjct: 1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN 60
Query: 61 PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC 120
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
Sbjct: 61 PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC 120
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
Sbjct: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
Query: 181 HGGYVKYWQSNMNNVKMFQAHKEAIREARF 210
HGGYVKYWQSNMNNVKMFQAHKEAIREA F
Sbjct: 181 HGGYVKYWQSNMNNVKMFQAHKEAIREASF 210
Score = 33.5 bits (75), Expect = 0.26
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 127 WTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA--DHGGY 184
++P + T + G +W+ L + E IL+ H + V+ + W +++ D
Sbjct: 210 FSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQP 269
Query: 185 VKYWQSNM-NNVKMFQAHKEAIREAR 209
+K+W ++ AHK + E +
Sbjct: 270 IKFWDPKTGQSLATLHAHKNTVMEVK 295
Score = 31.6 bits (70), Expect = 1.0
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 118 VKCPVFVVRWTPEGRRLVTGASSGE--FTLWNGLTFNFETILQAHDSPVRAMTWSHNDMW 175
VKC V W P +V+G+ + W+ T L AH + V + + N W
Sbjct: 247 VKC----VDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNW 302
Query: 176 MLTADHGGYVKYW--QSNMNNVKMFQAHKE 203
+LTA K + ++ +++F+ HK+
Sbjct: 303 LLTASRDHLCKLFDIRNLKEELQVFRGHKK 332
>gi|53729352 WD repeat-containing protein 1 isoform 2 [Homo sapiens]
Length = 466
Score = 43.5 bits (101), Expect = 3e-04
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETIL---QAHDSPVRAMTWSHNDMWMLTADH 181
VR++P+G R T ++ G+ +++G T L +AHD + A++WS + +L+A
Sbjct: 55 VRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSPDSTHLLSASG 114
Query: 182 GGYVKYWQSNMNNV 195
K W ++N+V
Sbjct: 115 DKTSKIWDVSVNSV 128
>gi|9257257 WD repeat-containing protein 1 isoform 1 [Homo sapiens]
Length = 606
Score = 43.5 bits (101), Expect = 3e-04
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETIL---QAHDSPVRAMTWSHNDMWMLTADH 181
VR++P+G R T ++ G+ +++G T L +AHD + A++WS + +L+A
Sbjct: 195 VRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSPDSTHLLSASG 254
Query: 182 GGYVKYWQSNMNNV 195
K W ++N+V
Sbjct: 255 DKTSKIWDVSVNSV 268
>gi|13376840 WD repeat domain 61 [Homo sapiens]
Length = 305
Score = 43.5 bits (101), Expect = 3e-04
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 122 VFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADH 181
+ + ++P+G+ L +GA G +++ T L+ H P+R++T+S + ++TA
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 210
Query: 182 GGYVKYWQSNMNNV 195
GY+K + N+
Sbjct: 211 DGYIKIYDVQHANL 224
>gi|189571685 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PV V +++P+ L +GA+ G LWN ++ D + A +S N + +T
Sbjct: 99 PVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGS 158
Query: 181 HGGYVKYWQSNMNNVKMFQAH 201
G + W M + +AH
Sbjct: 159 SCGDLTVWDDKMRCLHSEKAH 179
>gi|189571683 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PV V +++P+ L +GA+ G LWN ++ D + A +S N + +T
Sbjct: 99 PVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGS 158
Query: 181 HGGYVKYWQSNMNNVKMFQAH 201
G + W M + +AH
Sbjct: 159 SCGDLTVWDDKMRCLHSEKAH 179
>gi|189571681 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PV V +++P+ L +GA+ G LWN ++ D + A +S N + +T
Sbjct: 99 PVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGS 158
Query: 181 HGGYVKYWQSNMNNVKMFQAH 201
G + W M + +AH
Sbjct: 159 SCGDLTVWDDKMRCLHSEKAH 179
>gi|124256480 APG16 autophagy 16-like isoform 1 [Homo sapiens]
Length = 607
Score = 38.9 bits (89), Expect = 0.006
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETIL-QAHDSPVRAMTWSHNDMWMLTADHGG 183
V ++P+G + G++ G +W+ LT E +L + H S + A+ WS + +++ D G
Sbjct: 540 VVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDKGC 599
Query: 184 YVKYW 188
W
Sbjct: 600 KAVLW 604
>gi|124256478 APG16 autophagy 16-like isoform 2 [Homo sapiens]
Length = 588
Score = 38.9 bits (89), Expect = 0.006
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETIL-QAHDSPVRAMTWSHNDMWMLTADHGG 183
V ++P+G + G++ G +W+ LT E +L + H S + A+ WS + +++ D G
Sbjct: 521 VVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDKGC 580
Query: 184 YVKYW 188
W
Sbjct: 581 KAVLW 585
>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
Length = 538
Score = 38.9 bits (89), Expect = 0.006
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 126 RWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYV 185
RW G L G + G +W+ LT I+ AH PV ++ WS + +++A V
Sbjct: 34 RW---GTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIV 90
Query: 186 KYW 188
W
Sbjct: 91 SQW 93
>gi|21071067 TBP-associated factor 5 [Homo sapiens]
Length = 800
Score = 38.5 bits (88), Expect = 0.008
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 126 RWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYV 185
R+ P + TG++ LW+ L N I H P+ ++T+S N ++ T G V
Sbjct: 634 RFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRV 693
Query: 186 KYWQSNMN-NVKMFQAHKEAIREARF 210
W V + H + + RF
Sbjct: 694 LLWDIGHGLMVGELKGHTDTVCSLRF 719
Score = 34.3 bits (77), Expect = 0.15
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PV+ ++P+ L++ + G LW+ TF + H+ PV +S + ++
Sbjct: 545 PVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG 604
Query: 181 HGGYVKYWQS-NMNNVKMFQAHKEAIREARFIHN 213
H + W + + +++F H + RF N
Sbjct: 605 HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPN 638
Score = 32.0 bits (71), Expect = 0.77
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 119 KCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLT 178
K P+ + ++P GR L TGA+ G LW+ L+ H V ++ +S + + +
Sbjct: 669 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 728
Query: 179 ADHGGYVKYWQS 190
V+ W +
Sbjct: 729 GSMDNTVRLWDA 740
>gi|134133292 WD repeat domain 27 [Homo sapiens]
Length = 857
Score = 37.4 bits (85), Expect = 0.018
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 122 VFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADH 181
V ++++ +G+ L G ++ +++ + HD V A+ WS + W+L+A
Sbjct: 546 VCCIQYSGDGQWLACGLANHLLLVFDASLTGTPAVFSGHDGAVNAVCWSQDRRWLLSAAR 605
Query: 182 GGYVKYWQS 190
G ++ W +
Sbjct: 606 DGTLRMWSA 614
>gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens]
Length = 1298
Score = 36.6 bits (83), Expect = 0.031
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 122 VFVVRWTP--EGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA 179
VF V+W+P EG L +G+ G +W+ IL H +PVR + W+ ++L +
Sbjct: 545 VFHVKWSPLREGI-LCSGSDDGTVRIWDYTQDACINILNGHTAPVRGLMWNTEIPYLLIS 603
Query: 180 DHGGY-VKYWQS 190
Y +K W +
Sbjct: 604 GSWDYTIKVWDT 615
>gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens]
Length = 1322
Score = 36.6 bits (83), Expect = 0.031
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 122 VFVVRWTP--EGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA 179
VF V+W+P EG L +G+ G +W+ IL H +PVR + W+ ++L +
Sbjct: 569 VFHVKWSPLREGI-LCSGSDDGTVRIWDYTQDACINILNGHTAPVRGLMWNTEIPYLLIS 627
Query: 180 DHGGY-VKYWQS 190
Y +K W +
Sbjct: 628 GSWDYTIKVWDT 639
>gi|22749275 CDC20 cell division cycle 20 homolog B isoform 1 [Homo
sapiens]
Length = 515
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSH 171
V W EG L G S GE LW+ +T + H S V A++W+H
Sbjct: 279 VSWIKEGTCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNH 325
Score = 32.0 bits (71), Expect = 0.77
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 115 TNKVKCPVFVVRWTPEGRRLVTGASSGEFTLW 146
T + K V ++W+P+GR L +G S G T+W
Sbjct: 351 TLRHKQAVCALKWSPDGRLLSSGCSDGLLTIW 382
>gi|224593764 CDC20 cell division cycle 20 homolog B isoform 2 [Homo
sapiens]
Length = 477
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSH 171
V W EG L G S GE LW+ +T + H S V A++W+H
Sbjct: 279 VSWIKEGTCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNH 325
Score = 32.0 bits (71), Expect = 0.77
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 115 TNKVKCPVFVVRWTPEGRRLVTGASSGEFTLW 146
T + K V ++W+P+GR L +G S G T+W
Sbjct: 351 TLRHKQAVCALKWSPDGRLLSSGCSDGLLTIW 382
>gi|19913369 transducin beta-like 3 [Homo sapiens]
Length = 808
Score = 36.6 bits (83), Expect = 0.031
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 122 VFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADH 181
++ V+++P + L T ++ G LW F+ + HD+ V + + +L++
Sbjct: 524 LWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGS 583
Query: 182 GGYVKYWQSNMNN-VKMFQAHKEAI 205
G VK W N V+ AH++ +
Sbjct: 584 DGLVKLWTIKNNECVRTLDAHEDKV 608
>gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo
sapiens]
Length = 513
Score = 35.8 bits (81), Expect = 0.053
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 119 KCPVFVVRWTPEGRRLVTGASSGEFTLWN--------GLTFNFETILQAHDSPVRAMTWS 170
K V R++P+G+ LVTG+ G +WN L + + D V M +S
Sbjct: 214 KSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFS 273
Query: 171 HNDMWMLTADHGGYVKYW--QSNMNNVKMFQAHKEAI 205
+ + T G +K W QS + +AH + +
Sbjct: 274 RDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGV 310
>gi|21536371 telomerase-associated protein 1 [Homo sapiens]
Length = 2627
Score = 35.4 bits (80), Expect = 0.069
Identities = 21/56 (37%), Positives = 24/56 (42%)
Query: 134 LVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQ 189
+VT G LW+ L L H PVRA S MLTA G V+ WQ
Sbjct: 2211 VVTVGLDGATRLWHPLLVCQTHTLLGHSGPVRAAAVSETSGLMLTASEDGSVRLWQ 2266
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 122 VFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSH-NDMWMLTAD 180
V V W P+G V+G +GE LW H + A+ WS + ++L+AD
Sbjct: 2283 VTAVAWAPDGSMAVSGNQAGELILWQEAKAVATAQAPGH---IGALIWSSAHTFFVLSAD 2339
Query: 181 HGGYVKYWQ 189
+ WQ
Sbjct: 2340 E--KISEWQ 2346
>gi|5803221 WD repeat-containing protein 3 [Homo sapiens]
Length = 943
Score = 35.4 bits (80), Expect = 0.069
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 104 NAVTTKFVRTSTNKVK-CPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDS 162
N T + +RT T + C FV P R++V G +G+ L++ + N + AHD
Sbjct: 442 NRSTLQCIRTMTCEYALCSFFV----PGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDG 497
Query: 163 PVRAMTWSHNDMWMLTADHGGYVKYW 188
+ +M+ S + +T VK+W
Sbjct: 498 ALWSMSLSPDQRGFVTGGADKSVKFW 523
Score = 28.9 bits (63), Expect = 6.5
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 112 RTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSH 171
+T T ++ V V ++P + L ++ T F L H PV M SH
Sbjct: 542 QTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISH 601
Query: 172 NDMWMLTADHGGYVKYWQSNMNNV-KMFQAHKEAIREARFI 211
+ + T VK W + + K AH +++ +F+
Sbjct: 602 DGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQFV 642
>gi|62422577 neurobeachin [Homo sapiens]
Length = 2946
Score = 35.4 bits (80), Expect = 0.069
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 130 EGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQ 189
+G+ LVTG +G +W F I D+ +RAM SH+ ++T G + +
Sbjct: 2873 DGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFN 2932
Query: 190 SNMN 193
+ N
Sbjct: 2933 IDFN 2936
>gi|62234461 Notchless gene homolog isoform a [Homo sapiens]
Length = 485
Score = 35.4 bits (80), Expect = 0.069
Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 122 VFVVRWTPEGRRLVTGASSGEFTLWNGLT-FNFETILQAHDSPVRAMTW-----SHNDMW 175
V + W+P+GR+L +G +G+ LW+ T L H + ++W + +
Sbjct: 159 VLSISWSPDGRKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRY 218
Query: 176 MLTADHGGYVKYWQSNMNNV-KMFQAHKEAI 205
+ ++ G V+ W + ++ H +++
Sbjct: 219 VASSSKDGSVRIWDTTAGRCERILTGHTQSV 249
Score = 33.1 bits (74), Expect = 0.34
Identities = 15/73 (20%), Positives = 32/73 (43%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGY 184
V ++P+ R + + + LW+G T + L+ H + V + WS + +++
Sbjct: 378 VLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDST 437
Query: 185 VKYWQSNMNNVKM 197
+K W + M
Sbjct: 438 LKVWDVKAQKLAM 450
Score = 32.7 bits (73), Expect = 0.45
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 122 VFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADH 181
V+ + W+ + R LV+G+S +W+ L H V A+ WS + + +
Sbjct: 417 VYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGK 476
Query: 182 GGYVKYWQ 189
++ W+
Sbjct: 477 DKCLRIWR 484
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 129 PEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYW 188
PE R + + + G +W+ E IL H V + W D + +A +K W
Sbjct: 214 PECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRTIKVW 272
Query: 189 QSN 191
+++
Sbjct: 273 RAH 275
>gi|199559532 Abelson helper integration site 1 isoform b [Homo
sapiens]
Length = 1053
Score = 35.0 bits (79), Expect = 0.091
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 123 FVVRWTPEGRRLVTGASSGE---FTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA 179
F + ++ GR L +S + L+ + F L H + + ++WS +D ++LT+
Sbjct: 613 FCLDFSHNGRILAAACASRDGYPIILYEIPSGRFMRELCGHLNIIYDLSWSKDDHYILTS 672
Query: 180 DHGGYVKYWQSNMNNVKMFQA--HKEAIREARF 210
G + W++ +NN F+ H + A+F
Sbjct: 673 SSDGTARIWKNEINNTNTFRVLPHPSFVYTAKF 705
>gi|199559490 Abelson helper integration site 1 isoform a [Homo
sapiens]
Length = 1196
Score = 35.0 bits (79), Expect = 0.091
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 123 FVVRWTPEGRRLVTGASSGE---FTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA 179
F + ++ GR L +S + L+ + F L H + + ++WS +D ++LT+
Sbjct: 613 FCLDFSHNGRILAAACASRDGYPIILYEIPSGRFMRELCGHLNIIYDLSWSKDDHYILTS 672
Query: 180 DHGGYVKYWQSNMNNVKMFQA--HKEAIREARF 210
G + W++ +NN F+ H + A+F
Sbjct: 673 SSDGTARIWKNEINNTNTFRVLPHPSFVYTAKF 705
>gi|199559438 Abelson helper integration site 1 isoform a [Homo
sapiens]
Length = 1196
Score = 35.0 bits (79), Expect = 0.091
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 123 FVVRWTPEGRRLVTGASSGE---FTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA 179
F + ++ GR L +S + L+ + F L H + + ++WS +D ++LT+
Sbjct: 613 FCLDFSHNGRILAAACASRDGYPIILYEIPSGRFMRELCGHLNIIYDLSWSKDDHYILTS 672
Query: 180 DHGGYVKYWQSNMNNVKMFQA--HKEAIREARF 210
G + W++ +NN F+ H + A+F
Sbjct: 673 SSDGTARIWKNEINNTNTFRVLPHPSFVYTAKF 705
>gi|31542701 Abelson helper integration site 1 isoform a [Homo
sapiens]
Length = 1196
Score = 35.0 bits (79), Expect = 0.091
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 123 FVVRWTPEGRRLVTGASSGE---FTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTA 179
F + ++ GR L +S + L+ + F L H + + ++WS +D ++LT+
Sbjct: 613 FCLDFSHNGRILAAACASRDGYPIILYEIPSGRFMRELCGHLNIIYDLSWSKDDHYILTS 672
Query: 180 DHGGYVKYWQSNMNNVKMFQA--HKEAIREARF 210
G + W++ +NN F+ H + A+F
Sbjct: 673 SSDGTARIWKNEINNTNTFRVLPHPSFVYTAKF 705
>gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens]
Length = 589
Score = 35.0 bits (79), Expect = 0.091
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 125 VRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGY 184
V++ P L TG++ LW+ N + H PV ++ +S N ++ +A
Sbjct: 432 VKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQR 491
Query: 185 VKYWQSNMNNV-KMFQAHKEAIREARF 210
+K W + K + H + I F
Sbjct: 492 LKLWDLASGTLYKELRGHTDNITSLTF 518
Score = 29.3 bits (64), Expect = 5.0
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 121 PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD 180
PV + ++P G+ L + LW+ + L+ H + ++T+S + + +A
Sbjct: 470 PVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASAS 529
Query: 181 HGGYVKYW 188
V+ W
Sbjct: 530 MDNSVRVW 537
>gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens]
Length = 619
Score = 35.0 bits (79), Expect = 0.091
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 127 WTPEGRRLVTGASSGEFTLWNGLTFNFETILQA-HDSPVRAMTWSHNDMWMLTADHGGYV 185
++P+ + G+ G +W+ T E+ LQ H + V A+ W ++ M++ D G V
Sbjct: 556 FSPDRSYALAGSCDGALYIWDVDTGKLESRLQGPHCAAVNAVAWCYSGSHMVSVDQGRKV 615
Query: 186 KYWQ 189
WQ
Sbjct: 616 VLWQ 619
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,032,520
Number of Sequences: 37866
Number of extensions: 490557
Number of successful extensions: 1880
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1566
Number of HSP's gapped (non-prelim): 353
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.