Guide to the Human Genome
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Name: KIAA0240 Sequence: fasta or formatted (1079aa) NCBI GI: 54792088
Description:

hypothetical protein LOC23506

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         68           2
 C cysteine            1.1         12           2
 D aspartate           4.1         44           5
 E glutamate           3.9         42           2
 F phenylalanine       3.3         36           2
 G glycine             7.2         78           2
 H histidine           3.4         37           2
 I isoleucine          3.9         42           3
 K lysine              4.0         43           2
 L leucine             8.3         90           3
 M methionine          2.1         23           2
 N asparagine          5.8         63           2
 P proline             7.0         75           2
 Q glutamine           9.2         99           3
 R arginine            3.0         32           2
 S serine             14.5        156           4
 T threonine           5.8         63           2
 V valine              6.2         67           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23506 
GLTSCR1               0.063   glioma tumor suppressor candidate region gene 1 [Ho...
ARID2                 0.014   AT rich interactive domain 2 (ARID, RFX-like) 
MUC4                  0.013   mucin 4 isoform a 
PHC3                  0.010   polyhomeotic like 3 
ARID1B                0.009   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.009   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
SRCAP                 0.009   Snf2-related CBP activator protein 
MUC17                 0.009   mucin 17 
ARID1B                0.009   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
LOC100130716          0.009   PREDICTED: similar to mucin 11 
MUC6                  0.009   mucin 6, gastric 
LOC100131251          0.008   PREDICTED: hypothetical protein 
LOC100131251          0.008   PREDICTED: hypothetical protein 
MUC21                 0.008   mucin 21 
MUC16                 0.008   mucin 16 
MUC12                 0.008   PREDICTED: mucin 12 
MUC12                 0.008   PREDICTED: mucin 12 
CREBBP                0.008   CREB binding protein isoform b 
CREBBP                0.008   CREB binding protein isoform a 
NAV3                  0.008   neuron navigator 3 
ANLN                  0.008   anillin, actin binding protein 
MLL2                  0.007   myeloid/lymphoid or mixed-lineage leukemia 2 
UBAP2L                0.007   ubiquitin associated protein 2-like isoform a [Homo...
ATF7IP                0.007   activating transcription factor 7 interacting protei...
ZNF280D               0.007   suppressor of hairy wing homolog 4 isoform 2 
BAT2D1                0.007   HBxAg transactivated protein 2 
ZNF280D               0.007   suppressor of hairy wing homolog 4 isoform 1 
MUC12                 0.007   PREDICTED: mucin 12, cell surface associated 
MAGEC1                0.007   melanoma antigen family C, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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