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Search of human proteins with 5454140
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
(390 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 793 0.0
gi|103472011 ubiquitin-conjugating enzyme E2-like isoform a [Hom... 172 6e-43
gi|103472015 ubiquitin-conjugating enzyme E2-like isoform b [Hom... 172 6e-43
gi|8922157 proline rich 13 isoform 1 [Homo sapiens] 53 4e-07
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 52 7e-07
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 50 3e-06
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 50 3e-06
gi|241982780 programmed cell death 6 interacting protein isoform... 50 5e-06
gi|22027538 programmed cell death 6 interacting protein isoform ... 50 5e-06
gi|4557317 annexin A11 [Homo sapiens] 49 8e-06
gi|22165433 annexin A11 [Homo sapiens] 49 8e-06
gi|22165431 annexin A11 [Homo sapiens] 49 8e-06
gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B is... 48 2e-05
gi|4502111 annexin VII isoform 1 [Homo sapiens] 47 4e-05
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 46 5e-05
gi|157168329 formin 1 [Homo sapiens] 45 9e-05
gi|4809279 annexin VII isoform 2 [Homo sapiens] 45 9e-05
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 45 1e-04
gi|55750053 atrophin-1 [Homo sapiens] 45 1e-04
gi|55750041 atrophin-1 [Homo sapiens] 45 1e-04
gi|223555919 hepatocellular carcinoma related protein 1 isoform ... 44 2e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 44 2e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 44 3e-04
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 44 3e-04
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 44 3e-04
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 43 6e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 43 6e-04
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ... 42 7e-04
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 42 0.001
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 0.001
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 793 bits (2047), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 60
MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
Sbjct: 1 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 60
Query: 61 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 120
VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
Sbjct: 61 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 120
Query: 121 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP 180
QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP
Sbjct: 121 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP 180
Query: 181 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW 240
NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW
Sbjct: 181 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW 240
Query: 241 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 300
RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS
Sbjct: 241 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 300
Query: 301 ALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFL 360
ALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFL
Sbjct: 301 ALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFL 360
Query: 361 KHVRLLSRKQFQLRALMQKARKTAGLSDLY 390
KHVRLLSRKQFQLRALMQKARKTAGLSDLY
Sbjct: 361 KHVRLLSRKQFQLRALMQKARKTAGLSDLY 390
>gi|103472011 ubiquitin-conjugating enzyme E2-like isoform a [Homo
sapiens]
Length = 471
Score = 172 bits (435), Expect = 6e-43
Identities = 76/136 (55%), Positives = 103/136 (75%)
Query: 8 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 67
L++++ KYK+RDLTV E NV + K +D+YVF D S ++L+N TGTIPV Y+GNT
Sbjct: 8 LRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNT 67
Query: 68 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 127
YNIPI W+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
Query: 128 IQVMIVVFGDEPPVFS 143
I+ MI F +E P++S
Sbjct: 128 IKEMIAKFQEELPMYS 143
>gi|103472015 ubiquitin-conjugating enzyme E2-like isoform b [Homo
sapiens]
Length = 379
Score = 172 bits (435), Expect = 6e-43
Identities = 76/136 (55%), Positives = 103/136 (75%)
Query: 8 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 67
L++++ KYK+RDLTV E NV + K +D+YVF D S ++L+N TGTIPV Y+GNT
Sbjct: 8 LRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNT 67
Query: 68 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 127
YNIPI W+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
Query: 128 IQVMIVVFGDEPPVFS 143
I+ MI F +E P++S
Sbjct: 128 IKEMIAKFQEELPMYS 143
>gi|8922157 proline rich 13 isoform 1 [Homo sapiens]
Length = 148
Score = 53.1 bits (126), Expect = 4e-07
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 33/138 (23%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNP---SGYPGC---- 188
G P PI+ +PP PP G P G +P G PP+P GYPGC
Sbjct: 22 GGSNPAHPPPINPPFPPGPCPPPP------GAPHGNPAFPPGGPPHPVPQPGYPGCQPLG 75
Query: 189 PYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDR 248
PYPP P PA P PPV + P G + + DK +M+++M +
Sbjct: 76 PYPPPYPPPA------PGIPPVNPLAPGMVGP-----------AVIVDK---KMQKKMKK 115
Query: 249 AQAELNALKRTEEDLKKG 266
A +++ ++ + K G
Sbjct: 116 AHKKMHKHQKHHKYHKHG 133
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 52.4 bits (124), Expect = 7e-07
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 15/188 (7%)
Query: 130 VMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP 189
V+IV G P P A+ PP TGPP S P +P P P P P P
Sbjct: 788 VVIVPEGLPPLPPPPPSGATPPPIAPTGPPTAS--PPVPA--KEEPEELPAAPGPLPP-P 842
Query: 190 YPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDRA 249
PP P P + P P T G + ED ++ S+ + +EE +
Sbjct: 843 PPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEE------EEEEEEE 896
Query: 250 QAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALEKMENQS 309
+ E + EED ++ + EE ++E E ++ E +++ EL E+ E++
Sbjct: 897 EEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFE---EEEGELEEE-EEEEDEE 952
Query: 310 ENNDIDEV 317
E +++EV
Sbjct: 953 EEEELEEV 960
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 151 PPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPV 210
PP Q GP + P P P PS + P+ P GP P+ S PS P+
Sbjct: 636 PPLQPMGPTCPTPAPVPP----------PEAPSPFRAPPFHPPGPMPSVGS--MPSAGPM 683
Query: 211 TTVGP 215
+ GP
Sbjct: 684 PSAGP 688
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 136 GDEPPV--FSRPISASYPPYQATGPPNTSYMPGMPGGISPYP-SGYPPNP---SGYPGCP 189
G +PP+ +++P P Q P+ PG P G SPYP GYP P GYP P
Sbjct: 24 GPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGP 83
Query: 190 YP----PGGPYPATTSSQ--YPSQP 208
YP P GPYP Q YP P
Sbjct: 84 YPQEGYPQGPYPQGGYPQGPYPQSP 108
Score = 35.0 bits (79), Expect = 0.12
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 178 YPPNPSGYPGCPYPPGGPY--PATTSSQYPSQPP 209
YPP GYPG P PP PY P + YP QPP
Sbjct: 14 YPPPNPGYPGGPQPPMPPYAQPPYPGAPYP-QPP 46
Score = 34.3 bits (77), Expect = 0.20
Identities = 30/85 (35%), Positives = 31/85 (36%), Gaps = 41/85 (48%)
Query: 158 PPNTSYMPGMPGGI--------------SPYPS-----------GYPPNPS-----GYPG 187
PPN PG PGG +PYP GYP PS GYP
Sbjct: 16 PPN----PGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQ 71
Query: 188 CPYP----PGGPYPATTSSQYPSQP 208
PYP P GPYP YP P
Sbjct: 72 GPYPQGGYPQGPYP---QEGYPQGP 93
Score = 30.0 bits (66), Expect = 3.7
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 150 YP--PYQATGPPNTSY-MPGMPGGISPYP-SGYPPNPSGYP 186
YP PY G P Y G P G PYP S +PPNP G P
Sbjct: 79 YPQGPYPQEGYPQGPYPQGGYPQG--PYPQSPFPPNPYGQP 117
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 136 GDEPPV--FSRPISASYPPYQATGPPNTSYMPGMPGGISPYP-SGYPPNP---SGYPGCP 189
G +PP+ +++P P Q P+ PG P G SPYP GYP P GYP P
Sbjct: 24 GPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGP 83
Query: 190 YP----PGGPYPATTSSQ--YPSQP 208
YP P GPYP Q YP P
Sbjct: 84 YPQEGYPQGPYPQGGYPQGPYPQSP 108
Score = 35.0 bits (79), Expect = 0.12
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 178 YPPNPSGYPGCPYPPGGPY--PATTSSQYPSQPP 209
YPP GYPG P PP PY P + YP QPP
Sbjct: 14 YPPPNPGYPGGPQPPMPPYAQPPYPGAPYP-QPP 46
Score = 34.3 bits (77), Expect = 0.20
Identities = 30/85 (35%), Positives = 31/85 (36%), Gaps = 41/85 (48%)
Query: 158 PPNTSYMPGMPGGI--------------SPYPS-----------GYPPNPS-----GYPG 187
PPN PG PGG +PYP GYP PS GYP
Sbjct: 16 PPN----PGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQ 71
Query: 188 CPYP----PGGPYPATTSSQYPSQP 208
PYP P GPYP YP P
Sbjct: 72 GPYPQGGYPQGPYP---QEGYPQGP 93
Score = 30.0 bits (66), Expect = 3.7
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 150 YP--PYQATGPPNTSY-MPGMPGGISPYP-SGYPPNPSGYP 186
YP PY G P Y G P G PYP S +PPNP G P
Sbjct: 79 YPQGPYPQEGYPQGPYPQGGYPQG--PYPQSPFPPNPYGQP 117
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 49.7 bits (117), Expect = 5e-06
Identities = 32/78 (41%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 149 SYPPYQATGPPNTSYMPGMPGGIS-PYPSGYPPNPSGYPGCPYPP-------GGPYPATT 200
S PP QA GPP +Y PG PG P P GY P G PYPP PYP
Sbjct: 797 SAPPPQAQGPPYPTY-PGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQ 855
Query: 201 SSQYP-SQPPVTTVGPSR 217
YP QPP + P +
Sbjct: 856 QPSYPFPQPPQQSYYPQQ 873
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 49.7 bits (117), Expect = 5e-06
Identities = 32/78 (41%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 149 SYPPYQATGPPNTSYMPGMPGGIS-PYPSGYPPNPSGYPGCPYPP-------GGPYPATT 200
S PP QA GPP +Y PG PG P P GY P G PYPP PYP
Sbjct: 792 SAPPPQAQGPPYPTY-PGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQ 850
Query: 201 SSQYP-SQPPVTTVGPSR 217
YP QPP + P +
Sbjct: 851 QPSYPFPQPPQQSYYPQQ 868
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 48.9 bits (115), Expect = 8e-06
Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 121 QSDLLGLIQVMIVVFG--DEPPVFSRPISASYPPYQ--ATGPPNTSYMPGMPGGISPYPS 176
Q L G+ M FG + P ++ A YPP G P ++ P P G+ P P
Sbjct: 51 QDYLSGMAANMSGTFGGANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPG 110
Query: 177 G--------YPPNPSG-YPGCPYPPGGPYPATTSSQYPSQPPVTTVG 214
G YPP P PG P PP G P YP QPPVT G
Sbjct: 111 GNPPSRMPSYPPYPGAPVPGQPMPPPGQQP---PGAYPGQPPVTYPG 154
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/87 (33%), Positives = 29/87 (33%), Gaps = 29/87 (33%)
Query: 157 GPPNTSYMPGMPGGISPYPS--------GYPPNPSG-----------YPGCPYP------ 191
G P Y P PGG PS G P P G YPG P P
Sbjct: 76 GAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAPVPGQPMPP 135
Query: 192 ----PGGPYPATTSSQYPSQPPVTTVG 214
P G YP YP QPPV G
Sbjct: 136 PGQQPPGAYPGQPPVTYPGQPPVPLPG 162
Score = 37.0 bits (84), Expect = 0.031
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 174 YPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPV 210
YP GYPP P GYP P GGP+ PS PP+
Sbjct: 3 YP-GYPPPPGGYPPAA-PGGGPWGGAAYPPPPSMPPI 37
Score = 37.0 bits (84), Expect = 0.031
Identities = 34/98 (34%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 135 FGDEPPVFSRPISA--SYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPS-GYPGCPYP 191
+G PP P S SYPPY P P P G P P YP P YPG P
Sbjct: 103 YGMYPPPGGNPPSRMPSYPPYPGAPVPG---QPMPPPGQQP-PGAYPGQPPVTYPGQPPV 158
Query: 192 --PGGPYPATTSSQYPSQPPVTTVGPSRD----GTISE 223
PG P + YP VT P GTI++
Sbjct: 159 PLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITD 196
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 149 SYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYP 186
SYP Y PP Y P PGG + YPP PS P
Sbjct: 2 SYPGYP---PPPGGYPPAAPGGGPWGGAAYPPPPSMPP 36
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 48.9 bits (115), Expect = 8e-06
Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 121 QSDLLGLIQVMIVVFG--DEPPVFSRPISASYPPYQ--ATGPPNTSYMPGMPGGISPYPS 176
Q L G+ M FG + P ++ A YPP G P ++ P P G+ P P
Sbjct: 51 QDYLSGMAANMSGTFGGANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPG 110
Query: 177 G--------YPPNPSG-YPGCPYPPGGPYPATTSSQYPSQPPVTTVG 214
G YPP P PG P PP G P YP QPPVT G
Sbjct: 111 GNPPSRMPSYPPYPGAPVPGQPMPPPGQQP---PGAYPGQPPVTYPG 154
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/87 (33%), Positives = 29/87 (33%), Gaps = 29/87 (33%)
Query: 157 GPPNTSYMPGMPGGISPYPS--------GYPPNPSG-----------YPGCPYP------ 191
G P Y P PGG PS G P P G YPG P P
Sbjct: 76 GAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAPVPGQPMPP 135
Query: 192 ----PGGPYPATTSSQYPSQPPVTTVG 214
P G YP YP QPPV G
Sbjct: 136 PGQQPPGAYPGQPPVTYPGQPPVPLPG 162
Score = 37.0 bits (84), Expect = 0.031
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 174 YPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPV 210
YP GYPP P GYP P GGP+ PS PP+
Sbjct: 3 YP-GYPPPPGGYPPAA-PGGGPWGGAAYPPPPSMPPI 37
Score = 37.0 bits (84), Expect = 0.031
Identities = 34/98 (34%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 135 FGDEPPVFSRPISA--SYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPS-GYPGCPYP 191
+G PP P S SYPPY P P P G P P YP P YPG P
Sbjct: 103 YGMYPPPGGNPPSRMPSYPPYPGAPVPG---QPMPPPGQQP-PGAYPGQPPVTYPGQPPV 158
Query: 192 --PGGPYPATTSSQYPSQPPVTTVGPSRD----GTISE 223
PG P + YP VT P GTI++
Sbjct: 159 PLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITD 196
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 149 SYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYP 186
SYP Y PP Y P PGG + YPP PS P
Sbjct: 2 SYPGYP---PPPGGYPPAAPGGGPWGGAAYPPPPSMPP 36
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 48.9 bits (115), Expect = 8e-06
Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 121 QSDLLGLIQVMIVVFG--DEPPVFSRPISASYPPYQ--ATGPPNTSYMPGMPGGISPYPS 176
Q L G+ M FG + P ++ A YPP G P ++ P P G+ P P
Sbjct: 51 QDYLSGMAANMSGTFGGANMPNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPG 110
Query: 177 G--------YPPNPSG-YPGCPYPPGGPYPATTSSQYPSQPPVTTVG 214
G YPP P PG P PP G P YP QPPVT G
Sbjct: 111 GNPPSRMPSYPPYPGAPVPGQPMPPPGQQP---PGAYPGQPPVTYPG 154
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/87 (33%), Positives = 29/87 (33%), Gaps = 29/87 (33%)
Query: 157 GPPNTSYMPGMPGGISPYPS--------GYPPNPSG-----------YPGCPYP------ 191
G P Y P PGG PS G P P G YPG P P
Sbjct: 76 GAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAPVPGQPMPP 135
Query: 192 ----PGGPYPATTSSQYPSQPPVTTVG 214
P G YP YP QPPV G
Sbjct: 136 PGQQPPGAYPGQPPVTYPGQPPVPLPG 162
Score = 37.0 bits (84), Expect = 0.031
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 174 YPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPV 210
YP GYPP P GYP P GGP+ PS PP+
Sbjct: 3 YP-GYPPPPGGYPPAA-PGGGPWGGAAYPPPPSMPPI 37
Score = 37.0 bits (84), Expect = 0.031
Identities = 34/98 (34%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 135 FGDEPPVFSRPISA--SYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPS-GYPGCPYP 191
+G PP P S SYPPY P P P G P P YP P YPG P
Sbjct: 103 YGMYPPPGGNPPSRMPSYPPYPGAPVPG---QPMPPPGQQP-PGAYPGQPPVTYPGQPPV 158
Query: 192 --PGGPYPATTSSQYPSQPPVTTVGPSRD----GTISE 223
PG P + YP VT P GTI++
Sbjct: 159 PLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITD 196
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 149 SYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYP 186
SYP Y PP Y P PGG + YPP PS P
Sbjct: 2 SYPGYP---PPPGGYPPAAPGGGPWGGAAYPPPPSMPP 36
>gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B
isoform 1 [Homo sapiens]
Length = 338
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 144 RPISASYPPYQATGPPNTSYM-PGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSS 202
+P+++ P P TSY PGM G S SG SG P GP PA +
Sbjct: 85 QPLASQPPVVDPYDMPGTSYSTPGMSGYSSGGASG-----SGGPSTSGTTSGPGPARPAR 139
Query: 203 QYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEED 262
P +P T+ P + + +R + K R R +E DR QAE +
Sbjct: 140 ARPRRPREETLTPEEE---EKRRVRRERNKLAAAKCRNRRRELTDRLQAETD-------- 188
Query: 263 LKKGHQKLEEMVTRLDQEVAEVDKNIELLK 292
+LEE L+ E+AE+ K E L+
Sbjct: 189 ------QLEEEKAELESEIAELQKEKERLE 212
>gi|4502111 annexin VII isoform 1 [Homo sapiens]
Length = 466
Score = 46.6 bits (109), Expect = 4e-05
Identities = 33/77 (42%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 149 SYPPYQATG-PPNTSYMPG------MPGGISPYPSGYPP---------NPSGYPGC-PYP 191
SYP Y TG PP Y P P G PYPSG+PP SGYPG YP
Sbjct: 2 SYPGYPPTGYPPFPGYPPAGQESSFPPSGQYPYPSGFPPMGGGAYPQVPSSGYPGAGGYP 61
Query: 192 PGGPYPATTSSQYPSQP 208
G YPA YP P
Sbjct: 62 APGGYPA--PGGYPGAP 76
Score = 45.4 bits (106), Expect = 9e-05
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPG-GISPYPSGYPPNPSGYPGCPYPPGGP-Y 196
PP P + +PP P G PG G P P GYP P GYPG P P G P Y
Sbjct: 27 PPSGQYPYPSGFPPMGGGAYPQVP-SSGYPGAGGYPAPGGYPA-PGGYPGAPQPGGAPSY 84
Query: 197 PATTSSQYPSQPP 209
P Q PP
Sbjct: 85 PGVPPGQGFGVPP 97
Score = 41.2 bits (95), Expect = 0.002
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 53/197 (26%)
Query: 149 SYPPYQATGPPNTSYMPGMPGGISPYPSGYP--PNPSG---YPGCP------YPPGG--- 194
+YP ++G P P PGG P P GYP P P G YPG P PPGG
Sbjct: 45 AYPQVPSSGYPGAGGYPA-PGGY-PAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGF 102
Query: 195 ---PYPATTS--------------------SQYPSQPPVTTVGPSRDGTISEDTIR-ASL 230
P P + S SQYP P P+ +++ TIR A+
Sbjct: 103 SGYPQPPSQSYGGGPAQVPLPGGFPGGQMPSQYPGGQPTYPSQPATVTQVTQGTIRPAAN 162
Query: 231 ISAVSDK--LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNI 288
A+ D LR MK QA ++ + D + QK+ + +
Sbjct: 163 FDAIRDAEILRKAMKGFGTDEQAIVDVVANRSNDQR---QKI--------KAAFKTSYGK 211
Query: 289 ELLKKKDEELSSALEKM 305
+L+K ELS +E++
Sbjct: 212 DLIKDLKSELSGNMEEL 228
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 46.2 bits (108), Expect = 5e-05
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 154 QATGPPNTSYMPGMPGGISPYPSGYPPNPSGY----PGCPYPP---GGPYPATTSSQYPS 206
QA G P SY PG P Y SG PP GY PG PY P GGPY +PS
Sbjct: 16 QAPGAPPGSYYPGPPNSGGQYGSGLPPG-GGYGGPAPGGPYGPPAGGGPYGHPNPGMFPS 74
Query: 207 QPPVTTVGPSRDG 219
P G + G
Sbjct: 75 GTPGGPYGGAAPG 87
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 45.4 bits (106), Expect = 9e-05
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 28/225 (12%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYP-SGYPPNPSGYPGCPYPPG-GPY 196
PPV + P PP PP +S P P P P S PPNP G P P PPG P
Sbjct: 672 PPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPP 731
Query: 197 P--------ATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMD- 247
P ++SSQ P +P + P + + I+ S S + W EE D
Sbjct: 732 PPPGLFFGLGSSSSQCPRKPAIEPSCPMK--PLYWTRIQISDRSQNATPTLWDSLEEPDI 789
Query: 248 RAQAELNAL--KRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL------S 299
R +E L K T + KK + E + V K I+LL K + S
Sbjct: 790 RDPSEFEYLFSKDTTQQKKKPLSETYEKKNK-------VKKIIKLLDGKRSQTVGILISS 842
Query: 300 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFY 344
LE + Q ++D+ ++ L N E+ ++ +Y
Sbjct: 843 LHLEMKDIQQAIFNVDDSVVDLETLAALYENRAQEDELVKIRKYY 887
Score = 32.0 bits (71), Expect = 0.98
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 14/134 (10%)
Query: 88 FVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQS--DLLGLIQVMIVVFGDEPPVFSRP 145
F+KP S + T + K+ + L + P D+ +Q M + ++ P
Sbjct: 589 FLKPCESESKTTRSNQLVPKKLNISSLSQLSPPNDHKDIHAALQPMEGMASNQQKALPPP 648
Query: 146 ISASYPP----------YQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
++ PP A P S P +P P P PP+ +G P P PP P
Sbjct: 649 PASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPP--PPPPPPP 706
Query: 196 YPATTSSQYPSQPP 209
P + + P PP
Sbjct: 707 LPNSPAPPNPGGPP 720
Score = 32.0 bits (71), Expect = 0.98
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGY----PGCPYPP-- 192
PP + I A+ P + +P P I P P P PSG P P PP
Sbjct: 620 PPNDHKDIHAALQPMEGMASNQQKALPPPPASIPPPP----PLPSGLGSLSPAPPMPPVS 675
Query: 193 -GGPYPATTSSQYPSQPPVTTVGP 215
G P P P PP ++ GP
Sbjct: 676 AGPPLPPPPPPP-PPLPPPSSAGP 698
Score = 29.6 bits (65), Expect = 4.9
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGM-----PG---GISPYPSGYPPNPSGYPG 187
G PP P+ S P GPP PG+ PG G+ S P P+ P
Sbjct: 697 GPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPPPPPGLFFGLGSSSSQCPRKPAIEPS 756
Query: 188 CPYPP 192
CP P
Sbjct: 757 CPMKP 761
>gi|4809279 annexin VII isoform 2 [Homo sapiens]
Length = 488
Score = 45.4 bits (106), Expect = 9e-05
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPG-GISPYPSGYPPNPSGYPGCPYPPGGP-Y 196
PP P + +PP P G PG G P P GYP P GYPG P P G P Y
Sbjct: 27 PPSGQYPYPSGFPPMGGGAYPQVP-SSGYPGAGGYPAPGGYPA-PGGYPGAPQPGGAPSY 84
Query: 197 PATTSSQYPSQPP 209
P Q PP
Sbjct: 85 PGVPPGQGFGVPP 97
Score = 33.5 bits (75), Expect = 0.34
Identities = 32/98 (32%), Positives = 36/98 (36%), Gaps = 39/98 (39%)
Query: 149 SYPPYQATGPPNTSYMPGMPGGISPYPSGYP--PNPSG---YPGCP------YPPGG--- 194
+YP ++G P P PGG P P GYP P P G YPG P PPGG
Sbjct: 45 AYPQVPSSGYPGAGGYPA-PGGY-PAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGF 102
Query: 195 ---PYPATTS--------------------SQYPSQPP 209
P P + S SQYP P
Sbjct: 103 SGYPQPPSQSYGGGPAQVPLPGGFPGGQMPSQYPGGQP 140
Score = 33.1 bits (74), Expect = 0.44
Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 145 PISASYP-PYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPP-----GGPYPA 198
P YP P G P P PG G PP +G+ G P PP GGP
Sbjct: 61 PAPGGYPAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGFSGYPQPPSQSYGGGPAQV 120
Query: 199 T-----TSSQYPSQPP 209
Q PSQ P
Sbjct: 121 PLPGGFPGGQMPSQYP 136
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 45.1 bits (105), Expect = 1e-04
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPY-PSGYPPNPSGYPGCP-YPPG 193
G P P A P Y T P +Y P PGG +P PS P +PS P P Y P
Sbjct: 1576 GPSSPYIPSPGGAMSPSYSPTSP---AYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT 1632
Query: 194 GP-YPATTSSQYPSQPPVTTVGPSRDGT 220
P Y T+ S P+ P + PS T
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPT 1660
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P P+ P +PS P P Y P P Y T+
Sbjct: 1785 PTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSP 1844
Query: 202 SQYPSQPPVTTVGPSRDGT 220
S PS P T P T
Sbjct: 1845 SYSPSSPEYTPTSPKYSPT 1863
Score = 40.0 bits (92), Expect = 0.004
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGPYPATTSS 202
P S SY P + P + SY P P PS P +PS P P Y P P + TS
Sbjct: 1687 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1746
Query: 203 QY-PSQPPVTTVGPSRDGT 220
Y P+ P T PS T
Sbjct: 1747 NYSPTSPNYTPTSPSYSPT 1765
Score = 39.3 bits (90), Expect = 0.006
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1697
Query: 202 SQYPSQPPVTTVGPSRDGT 220
S P+ P + PS T
Sbjct: 1698 SYSPTSPSYSPTSPSYSPT 1716
Score = 39.3 bits (90), Expect = 0.006
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1645 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1704
Query: 202 SQYPSQPPVTTVGPSRDGT 220
S P+ P + PS T
Sbjct: 1705 SYSPTSPSYSPTSPSYSPT 1723
Score = 39.3 bits (90), Expect = 0.006
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1711
Query: 202 SQYPSQPPVTTVGPSRDGT 220
S P+ P + PS T
Sbjct: 1712 SYSPTSPSYSPTSPSYSPT 1730
Score = 39.3 bits (90), Expect = 0.006
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1718
Query: 202 SQYPSQPPVTTVGPSRDGT 220
S P+ P + PS T
Sbjct: 1719 SYSPTSPSYSPTSPSYSPT 1737
Score = 39.3 bits (90), Expect = 0.006
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Query: 202 SQYPSQPPVTTVGPSRDGT 220
S P+ P + PS T
Sbjct: 1726 SYSPTSPSYSPTSPSYSPT 1744
Score = 38.9 bits (89), Expect = 0.008
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGPYPATTSS 202
P S SY P + P + SY P P PS P +PS P P Y P P + TS
Sbjct: 1694 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSP 1753
Query: 203 QY-PSQPPVTTVGPSRDGT 220
Y P+ P + PS T
Sbjct: 1754 NYTPTSPSYSPTSPSYSPT 1772
Score = 38.5 bits (88), Expect = 0.010
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 138 EPPVFSRPISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP 195
+ P +S P S SY P + P + +Y P P PS P +PS P P Y P P
Sbjct: 1611 QSPSYS-PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1669
Query: 196 -YPATTSSQYPSQPPVTTVGPSRDGT 220
Y T+ S P+ P + PS T
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPT 1695
Score = 38.1 bits (87), Expect = 0.014
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1732
Query: 202 SQYPSQPPVTTVGPSRDGT 220
S P+ P + P+ T
Sbjct: 1733 SYSPTSPSYSPTSPNYSPT 1751
Score = 38.1 bits (87), Expect = 0.014
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + +Y P P PS P +PS P P Y P P Y T+
Sbjct: 1729 PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP 1788
Query: 202 SQYPSQPPVTTVGPS 216
S P+ P + PS
Sbjct: 1789 SYSPTSPSYSPTSPS 1803
Score = 37.7 bits (86), Expect = 0.018
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSP 1760
Query: 202 SQYPSQPPVTTVGPS 216
S P+ P + P+
Sbjct: 1761 SYSPTSPSYSPTSPN 1775
Score = 37.4 bits (85), Expect = 0.023
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGP-YPATTS 201
P S SY P + P + SY P P PS P +PS P P Y P P Y T+
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1739
Query: 202 SQYPSQPPVTTVGPS 216
S P+ P + P+
Sbjct: 1740 SYSPTSPNYSPTSPN 1754
Score = 37.4 bits (85), Expect = 0.023
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGPYPATTSS 202
P S SY P + P + SY P P P+ P +PS P P Y P P TS
Sbjct: 1722 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP 1781
Query: 203 QY-PSQPPVTTVGPSRDGT 220
Y P+ P + PS T
Sbjct: 1782 NYSPTSPSYSPTSPSYSPT 1800
Score = 37.4 bits (85), Expect = 0.023
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 145 PISASYPPYQATGPPNT-SYMPGMPGGISPYPSGYPPNPSGYPGCP--------YPPGGP 195
P S SY P P + +Y P P PS P +PS P P Y P P
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSP 1823
Query: 196 -YPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDK 237
Y ++ S P+ P T PS + E T + S S K
Sbjct: 1824 SYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 1866
Score = 34.3 bits (77), Expect = 0.20
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCP-YPPGGPYPATTSS 202
P S SY P + P + Y P P PS P +PS P P Y P P + +S
Sbjct: 1792 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1851
Query: 203 QY-PSQPPVTTVGPSRDGT 220
+Y P+ P + P T
Sbjct: 1852 EYTPTSPKYSPTSPKYSPT 1870
Score = 33.1 bits (74), Expect = 0.44
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 135 FGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNP----SGYPGCPY 190
FG P A P Q P ++ P + G++P +G+ P+ SG+
Sbjct: 1503 FGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS 1562
Query: 191 PPGGPYPATTSSQYPSQPPVTTVG 214
P P P + S PS P + + G
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPG 1586
Score = 29.6 bits (65), Expect = 4.9
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 145 PISASYPPYQATG--PPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPG--GPY-PAT 199
P ++ P +G P + P S + GY P S PG P PG PY P+
Sbjct: 1526 PAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSP 1585
Query: 200 TSSQYPSQPPVT 211
+ PS P +
Sbjct: 1586 GGAMSPSYSPTS 1597
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 44.7 bits (104), Expect = 1e-04
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 139 PPVFSRPISASYPPYQATGPPNT--SYMPGMPG-GISPYPSGYPPNPSGYPGCPYPP--- 192
PP F + + P Y+ T PP ++ PG P G P P P PSG P P PP
Sbjct: 662 PPSFR---TGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLP---PAGPSGLPSLPPPPAAP 715
Query: 193 --GGPYPATTSSQYPS---QPPVTTVGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMD 247
G P AT Q P+ + P + V P+R + + ++ S R + +D
Sbjct: 716 ASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSA----RFNKHLD 771
Query: 248 R-----AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 302
R A+++L + L K L E V R ++ A +K E +++++E
Sbjct: 772 RGFNSCARSDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREK 831
Query: 303 EK 304
E+
Sbjct: 832 ER 833
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
Query: 145 PISASYPPYQATGPPNTSYMPGMPGGISPYPSGY-----PPNPSGYPGCPYPPG------ 193
P S + P Y + PP TS +S P Y P G P PP
Sbjct: 400 PASQALPSYPHSFPPPTSL------SVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453
Query: 194 ------GPYPATTSSQYPSQPPVTT 212
GP+P +T +Q + PPV+T
Sbjct: 454 NSNAHPGPFPPSTGAQSTAHPPVST 478
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 139 PPVFSRPISASYPPYQATGPP-NTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
PP S+ SY GPP ++S YP +P G G PY P P P
Sbjct: 550 PPPHSQ---VSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPY-PFPPVP 605
Query: 198 ATTSSQYPSQPPVTTVGPSRDG 219
T+S + TV S G
Sbjct: 606 TVTTSSATLSTVIATVASSPAG 627
Score = 30.8 bits (68), Expect = 2.2
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 156 TGPPNTSYMPG-MPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQY------PSQP 208
+GPP P + GG S + Y +PS PYPPG + SQ P+ P
Sbjct: 507 SGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGP 566
Query: 209 PVTTVGPSRDGT 220
PV++ S T
Sbjct: 567 PVSSSSNSSSST 578
Score = 29.6 bits (65), Expect = 4.9
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 139 PPVFSRPISASYPPYQA---TG------PPNTSYMPGMPGGISPYPSGYPPNPSG-YPGC 188
P R AS+ P+ + TG PP + PG P+P YP G G
Sbjct: 172 PDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGP 231
Query: 189 PYPPGGPYPATT------SSQYPSQPPVTTVGPSRDG 219
P P G A++ Q+P PP T + S G
Sbjct: 232 PMGPKGGGAASSVGGPNGGKQHP--PPTTPISVSSSG 266
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 44.7 bits (104), Expect = 1e-04
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 139 PPVFSRPISASYPPYQATGPPNT--SYMPGMPG-GISPYPSGYPPNPSGYPGCPYPP--- 192
PP F + + P Y+ T PP ++ PG P G P P P PSG P P PP
Sbjct: 662 PPSFR---TGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLP---PAGPSGLPSLPPPPAAP 715
Query: 193 --GGPYPATTSSQYPS---QPPVTTVGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMD 247
G P AT Q P+ + P + V P+R + + ++ S R + +D
Sbjct: 716 ASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSA----RFNKHLD 771
Query: 248 R-----AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 302
R A+++L + L K L E V R ++ A +K E +++++E
Sbjct: 772 RGFNSCARSDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREK 831
Query: 303 EK 304
E+
Sbjct: 832 ER 833
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
Query: 145 PISASYPPYQATGPPNTSYMPGMPGGISPYPSGY-----PPNPSGYPGCPYPPG------ 193
P S + P Y + PP TS +S P Y P G P PP
Sbjct: 400 PASQALPSYPHSFPPPTSL------SVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453
Query: 194 ------GPYPATTSSQYPSQPPVTT 212
GP+P +T +Q + PPV+T
Sbjct: 454 NSNAHPGPFPPSTGAQSTAHPPVST 478
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 139 PPVFSRPISASYPPYQATGPP-NTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
PP S+ SY GPP ++S YP +P G G PY P P P
Sbjct: 550 PPPHSQ---VSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPY-PFPPVP 605
Query: 198 ATTSSQYPSQPPVTTVGPSRDG 219
T+S + TV S G
Sbjct: 606 TVTTSSATLSTVIATVASSPAG 627
Score = 30.8 bits (68), Expect = 2.2
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 156 TGPPNTSYMPG-MPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQY------PSQP 208
+GPP P + GG S + Y +PS PYPPG + SQ P+ P
Sbjct: 507 SGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGP 566
Query: 209 PVTTVGPSRDGT 220
PV++ S T
Sbjct: 567 PVSSSSNSSSST 578
Score = 29.6 bits (65), Expect = 4.9
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 139 PPVFSRPISASYPPYQA---TG------PPNTSYMPGMPGGISPYPSGYPPNPSG-YPGC 188
P R AS+ P+ + TG PP + PG P+P YP G G
Sbjct: 172 PDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGP 231
Query: 189 PYPPGGPYPATT------SSQYPSQPPVTTVGPSRDG 219
P P G A++ Q+P PP T + S G
Sbjct: 232 PMGPKGGGAASSVGGPNGGKQHP--PPTTPISVSSSG 266
>gi|223555919 hepatocellular carcinoma related protein 1 isoform 1
[Homo sapiens]
Length = 397
Score = 43.9 bits (102), Expect = 2e-04
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 49/265 (18%)
Query: 61 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPT--SSMTIKTGKHVDANGKIYLPYLHEWK 118
+P+ N I I + L +P P+ V P + K G +V + P ++ +
Sbjct: 54 LPFTINNLTININILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTS------PLVNNFT 107
Query: 119 HPQSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPS-G 177
SDL +IQ ++ F PPV + P S ++P Y+ P G+SPY S G
Sbjct: 108 M-HSDLGKIIQSLLDEFWKNPPVLA-PTSTAFP-----------YLYSNPSGMSPYASQG 154
Query: 178 YPPNPSGYPGCPYPP------------GGPYPATTSSQYPSQPPVTTVGPSRDGTISEDT 225
+P P PYPP ++T+S ++P + G + + T
Sbjct: 155 FPFLP------PYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPT 208
Query: 226 IRASLISAVSDKLRWRMKEEMDRAQAELNALKRTE-EDLKKGHQKLEEM---VTRLDQEV 281
+ AS I + ++M + D A EL+ L ++ D+ + + L E + +L Q +
Sbjct: 209 VDAS-IPTSQNGFGYKMPDVPD-AFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQII 266
Query: 282 AEVD---KNIELLKKKDEELSSALE 303
+ D K+IE L +K+ L +LE
Sbjct: 267 TDKDDLVKSIEELARKNLLLEPSLE 291
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGG---ISPYPSGYPPNPSGY---PGCP 189
G PP P + PP + PP PG P G + P P G PP GY PG P
Sbjct: 251 GPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPP 310
Query: 190 YP------PGGPYPATTSSQYPSQPPVTTVGP 215
P P GP+P P PP+T P
Sbjct: 311 PPQQGPPPPPGPFPPRPPG--PLGPPLTLAPP 340
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPN-------PSGYPGC 188
G PP F + PP GPP P PG + P P PPN P +PG
Sbjct: 224 GGPPPPFPAGQTPPRPPLGPPGPPGPP-GPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQ 282
Query: 189 PY--PPGGPYPATTSSQYPSQPPVTTVGPSRDG 219
P+ PP GP P P P P + G
Sbjct: 283 PFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQG 315
Score = 35.8 bits (81), Expect = 0.068
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 136 GDEPPV--------FSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPG 187
GD PP F +P PP GPP G P G P G PP P +P
Sbjct: 270 GDRPPPPVLFPGQPFGQPPLGPLPP----GPPPPVPGYGPPPGPPPPQQGPPPPPGPFP- 324
Query: 188 CPYPPGGPYPATTSSQYPSQP 208
P PPG P T + P P
Sbjct: 325 -PRPPGPLGPPLTLAPPPHLP 344
Score = 35.4 bits (80), Expect = 0.089
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 157 GPPNTSYMPGMPGG---ISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTV 213
GPP S P G +P G P +PG P PGGP P + Q P +PP+
Sbjct: 187 GPPGGSSRAAFPQGGRGRGRFP-GAVPGGDRFPG-PAGPGGPPPPFPAGQTPPRPPLGPP 244
Query: 214 GP 215
GP
Sbjct: 245 GP 246
Score = 33.1 bits (74), Expect = 0.44
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 165 PGMPGGISP-YPSGYPPN--PSGYPGCPYPPGGPYPATTSSQYPSQPP 209
P PGG P +P+G P P G PG P PPG P P + PP
Sbjct: 220 PAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPP 267
Score = 31.2 bits (69), Expect = 1.7
Identities = 44/169 (26%), Positives = 60/169 (35%), Gaps = 38/169 (22%)
Query: 136 GDEPPVFSR-PISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPN------PSGYPGC 188
G PPV P PP Q PP + P PG + P + PP P P
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPA 354
Query: 189 PYPPGGPYPATTSSQYPSQ-----PPVTTVG------------PSRDGTISEDTIRASLI 231
P+ +P T+S P+ PP G P R+ DT R L
Sbjct: 355 PHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRE----MDTARTPLS 410
Query: 232 SAVSDKLRWRMKEEMDRAQA-ELNALKRTEEDLKKGH--QKLEEMVTRL 277
A +E M+R +A +A+ R D G +E +VT +
Sbjct: 411 EA-------EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAI 452
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 43.5 bits (101), Expect = 3e-04
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 157 GPPNTSYMPGMPGGISPY-PSGY-PPNP------SGYPGCPYPPGGPYPATTSSQYPSQP 208
GPP +PG+PG I P P G+ PP P G G P PG P P Q +QP
Sbjct: 603 GPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 209 --PVTTVGPSRDGTI 221
P P RDG +
Sbjct: 663 GKPGLPGNPGRDGDV 677
Score = 40.8 bits (94), Expect = 0.002
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 157 GPPNTSYMPGMPG-----GISPYPSGYPPNPSGYPGCPYPPGGP-YPATTSSQYPSQPP 209
G P +PG+PG GI PP P G+PG P PPG P P + P PP
Sbjct: 684 GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Score = 36.6 bits (83), Expect = 0.040
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 152 PYQATGPPNTSYMPGMPGGISPYPSGYP--PNPSGYPGCPYPPGGPYPATTSSQYPSQPP 209
P +GPP +PG PG + G+P P P G G P G P PA + P QP
Sbjct: 1132 PKGISGPPGNPGLPGEPGPVG--GGGHPGQPGPPGEKGKPGQDGIPGPAGQKGE-PGQPG 1188
Query: 210 VTTVGP 215
GP
Sbjct: 1189 FGNPGP 1194
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPY-------PSGYPPNPSGYPGCPYP 191
PP F P P + GPP +PG G + P P G PP +G G P P
Sbjct: 741 PPGFPGP--KGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPG-PPGRTGLDGLPGP 797
Query: 192 PG--GPYPATTSSQYPSQPPVTTVGP 215
G GP P P + GP
Sbjct: 798 KGDVGPNGQPGPMGPPGLPGIGVQGP 823
Score = 35.0 bits (79), Expect = 0.12
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 155 ATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQ--PPVTT 212
A G P PG PG P PP G PG P P GG +P Q PP
Sbjct: 1114 AKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGG-------GGHPGQPGPPGEK 1166
Query: 213 VGPSRDG 219
P +DG
Sbjct: 1167 GKPGQDG 1173
Score = 33.9 bits (76), Expect = 0.26
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 152 PYQATGPPNTSYMPGMPG--------------GISPYPSGYPPNPSGYPGCPYPPGGP 195
P GPP S +PG PG GIS P P G PG P PG P
Sbjct: 1037 PQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNP 1094
Score = 33.5 bits (75), Expect = 0.34
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 157 GPPNTSYMPGMPG-GISPYPSGYP-----------PNPSGYPGCPYPPGGP 195
G P T +PGMPG +P P G P P G+PG PPG P
Sbjct: 99 GFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Score = 33.5 bits (75), Expect = 0.34
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGIS----PYPSGYPPNPSGYPGCPYPPGGPYPAT 199
P S +P Q GPP M G PG I P P G P GYPG P G P P
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP----GYPGPPGIQGLPGPTG 189
Query: 200 TSSQYPSQPPVTTVGP 215
P +GP
Sbjct: 190 IPGPIGPPGPPGLMGP 205
Score = 33.5 bits (75), Expect = 0.34
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPS--GYPGCPYPPGGPYP 197
GPP PG+PG P G P P G G P PPG P P
Sbjct: 710 GPPGPKGFPGIPG-----PPGAPGTPGRIGLEGPPGPPGFPGP 747
Score = 33.5 bits (75), Expect = 0.34
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYP-----------PNPSGYPGCPYPPGGP-YPATTSSQY 204
GP PG PG +P P G P P G PG P P G P + Q
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG 1235
Query: 205 PSQPPVTTVGPSRDG 219
P PP + GP+ +G
Sbjct: 1236 PPGPP-GSPGPALEG 1249
Score = 33.1 bits (74), Expect = 0.44
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 157 GPPNTSYMPGMPGGISPY-------------PSGY--PPNPSGYPGCPYPPGGP 195
GP +PG PG I P P G PP PSG PG P PG P
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLP 1059
Score = 32.7 bits (73), Expect = 0.58
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 156 TGPPNTSYMPGMPGGISPYPSGYP-----------PNPSGYPGCPYPPGGP 195
+GPP +PG+PG P G+P P G PG P PG P
Sbjct: 490 SGPPGQPGLPGLPG--PPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAP 538
Score = 32.0 bits (71), Expect = 0.98
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 151 PPYQATGPPNTSYMPGMPGGISPYPSGYPPNP--------SGYPGCP------YPPGGPY 196
P GPP PG+PG +P P G P +P SG+PG PPG P
Sbjct: 851 PGLDVPGPPGERGSPGIPG--APGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPG 908
Query: 197 P 197
P
Sbjct: 909 P 909
Score = 32.0 bits (71), Expect = 0.98
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPGGIS-PYPSGYPPNPSGYPGCPYPPGGPYPA 198
P F P P +G +PG+PG P P G P G+PG PPG P
Sbjct: 1187 PGFGNPGPPGLPGL--SGQKGDGGLPGIPGNPGLPGPKG-EPGFHGFPGVQGPPGPPGSP 1243
Query: 199 TTSSQYPSQPPVTTVGPSRDG 219
+ + P P P R G
Sbjct: 1244 GPALEGPKGNPGPQGPPGRPG 1264
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPG 193
G P S PG+PG P P G P P G PG PPG
Sbjct: 991 GQPGLSGQPGLPG--PPGPKGNPGLP-GQPGLIGPPG 1024
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYP--------PNPSGYPGCPYPPGGP 195
GPP PG PG P G P P P+G+ G P P G P
Sbjct: 1235 GPPGP---PGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPP 1278
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 26/70 (37%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSG----------Y 185
GDE P P GPP PG PG P PP P+G
Sbjct: 409 GDEGP----------PGISIPGPPGLDGQPGAPG----LPG--PPGPAGPHIPPSDEICE 452
Query: 186 PGCPYPPGGP 195
PG P PPG P
Sbjct: 453 PGPPGPPGSP 462
Score = 30.4 bits (67), Expect = 2.9
Identities = 29/85 (34%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 140 PVFSRPISASYPPYQAT-GPPNTSYMPGM--------PGGISPYPSGYPPNPSGYPGCPY 190
P P PP A GPP PG P GIS P PP G PG P
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS-IPG--PPGLDGQPGAPG 432
Query: 191 PPGGPYPATTSSQYPSQPPVTTVGP 215
PG P PA P + GP
Sbjct: 433 LPGPPGPA--GPHIPPSDEICEPGP 455
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPN--PSGYPGCPYPPGGP 195
G P +PG PG PSG P + P G PG PPG P
Sbjct: 1327 GDPGLPGVPGFPG--MKGPSGVPGSAGPEGEPGLIGPPGPP 1365
Score = 29.6 bits (65), Expect = 4.9
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 139 PPVFSRPISASYP-PYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
P + P +P P GP G+PG P PP G+PG P PG P
Sbjct: 53 PGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Score = 29.6 bits (65), Expect = 4.9
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 22/70 (31%)
Query: 156 TGPPNTSYMPGMPGGISPYPS-----------GYPPNPS-----GYPGCPYPPGGPYPAT 199
TGPP G PG + P P G P P G+PG PPG P P
Sbjct: 336 TGPP------GPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPG 389
Query: 200 TSSQYPSQPP 209
+ P PP
Sbjct: 390 AAVMGPPGPP 399
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPS-----------GYPGCPYPPG 193
GPP G PG P P G P P G+PG P PPG
Sbjct: 740 GPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 29.3 bits (64), Expect = 6.4
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
GPP +PG P GI P P G PP P PG PPG P
Sbjct: 177 GPPGIQGLPG-PTGI-PGPIG-PPGP---PGLMGPPGPP 209
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 157 GPPNTSYMPGMPG-GISPYPSGYPPNPSGYPG--CPYPPGGP 195
GPP PG G P P G+ P P G PG P PPG P
Sbjct: 722 GPPGAPGTPGRIGLEGPPGPPGF-PGPKGEPGFALPGPPGPP 762
Score = 29.3 bits (64), Expect = 6.4
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
G P PG PG P G P G PG PPG P P
Sbjct: 1229 GFPGVQGPPGPPGSPGPALEG----PKGNPGPQGPPGRPGP 1265
Score = 29.3 bits (64), Expect = 6.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 165 PGMPGGISPYPSGYPPNPSGYPGCPYPPG 193
PG+PG PP P G G P PPG
Sbjct: 1432 PGLPGQPGTRGLDGPPGPDGLQGPPGPPG 1460
Score = 28.9 bits (63), Expect = 8.3
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
G P PG+PG P P G PP P G G PG P P
Sbjct: 51 GFPGLEGHPGLPG--FPGPEG-PPGPRGQKGDDGIPGPPGP 88
Score = 28.9 bits (63), Expect = 8.3
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 164 MPGMPGGISPYP-SGYPPNP-----SGYPGCPYPPGGPYPATTSSQYPSQPPVTTVG-PS 216
+PG+PG P G P +P SG PG P PPG + P QP + +G P
Sbjct: 971 LPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG----PKGNPGLPGQPGL--IGPPG 1024
Query: 217 RDGTISE 223
GTI +
Sbjct: 1025 LKGTIGD 1031
Score = 28.9 bits (63), Expect = 8.3
Identities = 19/57 (33%), Positives = 21/57 (36%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
PP P S GPP PG+ G P P P+G PG P G P
Sbjct: 1364 PPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1420
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 43.5 bits (101), Expect = 3e-04
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 157 GPPNTSYMPGMPGGISPY-PSGY-PPNP------SGYPGCPYPPGGPYPATTSSQYPSQP 208
GPP +PG+PG I P P G+ PP P G G P PG P P Q +QP
Sbjct: 603 GPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 209 --PVTTVGPSRDGTI 221
P P RDG +
Sbjct: 663 GKPGLPGNPGRDGDV 677
Score = 40.8 bits (94), Expect = 0.002
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 157 GPPNTSYMPGMPG-----GISPYPSGYPPNPSGYPGCPYPPGGP-YPATTSSQYPSQPP 209
G P +PG+PG GI PP P G+PG P PPG P P + P PP
Sbjct: 684 GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Score = 36.6 bits (83), Expect = 0.040
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 152 PYQATGPPNTSYMPGMPGGISPYPSGYP--PNPSGYPGCPYPPGGPYPATTSSQYPSQPP 209
P +GPP +PG PG + G+P P P G G P G P PA + P QP
Sbjct: 1132 PKGISGPPGNPGLPGEPGPVG--GGGHPGQPGPPGEKGKPGQDGIPGPAGQKGE-PGQPG 1188
Query: 210 VTTVGP 215
GP
Sbjct: 1189 FGNPGP 1194
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPY-------PSGYPPNPSGYPGCPYP 191
PP F P P + GPP +PG G + P P G PP +G G P P
Sbjct: 741 PPGFPGP--KGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPG-PPGRTGLDGLPGP 797
Query: 192 PG--GPYPATTSSQYPSQPPVTTVGP 215
G GP P P + GP
Sbjct: 798 KGDVGPNGQPGPMGPPGLPGIGVQGP 823
Score = 35.0 bits (79), Expect = 0.12
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 155 ATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQ--PPVTT 212
A G P PG PG P PP G PG P P GG +P Q PP
Sbjct: 1114 AKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGG-------GGHPGQPGPPGEK 1166
Query: 213 VGPSRDG 219
P +DG
Sbjct: 1167 GKPGQDG 1173
Score = 33.9 bits (76), Expect = 0.26
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 152 PYQATGPPNTSYMPGMPG--------------GISPYPSGYPPNPSGYPGCPYPPGGP 195
P GPP S +PG PG GIS P P G PG P PG P
Sbjct: 1037 PQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNP 1094
Score = 33.5 bits (75), Expect = 0.34
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 157 GPPNTSYMPGMPG-GISPYPSGYP-----------PNPSGYPGCPYPPGGP 195
G P T +PGMPG +P P G P P G+PG PPG P
Sbjct: 99 GFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Score = 33.5 bits (75), Expect = 0.34
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGIS----PYPSGYPPNPSGYPGCPYPPGGPYPAT 199
P S +P Q GPP M G PG I P P G P GYPG P G P P
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP----GYPGPPGIQGLPGPTG 189
Query: 200 TSSQYPSQPPVTTVGP 215
P +GP
Sbjct: 190 IPGPIGPPGPPGLMGP 205
Score = 33.5 bits (75), Expect = 0.34
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPS--GYPGCPYPPGGPYP 197
GPP PG+PG P G P P G G P PPG P P
Sbjct: 710 GPPGPKGFPGIPG-----PPGAPGTPGRIGLEGPPGPPGFPGP 747
Score = 33.5 bits (75), Expect = 0.34
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYP-----------PNPSGYPGCPYPPGGP-YPATTSSQY 204
GP PG PG +P P G P P G PG P P G P + Q
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG 1235
Query: 205 PSQPPVTTVGPSRDG 219
P PP + GP+ +G
Sbjct: 1236 PPGPP-GSPGPALEG 1249
Score = 33.1 bits (74), Expect = 0.44
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 157 GPPNTSYMPGMPGGISPY-------------PSGY--PPNPSGYPGCPYPPGGP 195
GP +PG PG I P P G PP PSG PG P PG P
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLP 1059
Score = 32.7 bits (73), Expect = 0.58
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 156 TGPPNTSYMPGMPGGISPYPSGYP-----------PNPSGYPGCPYPPGGP 195
+GPP +PG+PG P G+P P G PG P PG P
Sbjct: 490 SGPPGQPGLPGLPG--PPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAP 538
Score = 32.0 bits (71), Expect = 0.98
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 151 PPYQATGPPNTSYMPGMPGGISPYPSGYPPNP--------SGYPGCP------YPPGGPY 196
P GPP PG+PG +P P G P +P SG+PG PPG P
Sbjct: 851 PGLDVPGPPGERGSPGIPG--APGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPG 908
Query: 197 P 197
P
Sbjct: 909 P 909
Score = 32.0 bits (71), Expect = 0.98
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPGGIS-PYPSGYPPNPSGYPGCPYPPGGPYPA 198
P F P P +G +PG+PG P P G P G+PG PPG P
Sbjct: 1187 PGFGNPGPPGLPGL--SGQKGDGGLPGIPGNPGLPGPKG-EPGFHGFPGVQGPPGPPGSP 1243
Query: 199 TTSSQYPSQPPVTTVGPSRDG 219
+ + P P P R G
Sbjct: 1244 GPALEGPKGNPGPQGPPGRPG 1264
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPG 193
G P S PG+PG P P G P P G PG PPG
Sbjct: 991 GQPGLSGQPGLPG--PPGPKGNPGLP-GQPGLIGPPG 1024
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 26/70 (37%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSG----------Y 185
GDE P P GPP PG PG P PP P+G
Sbjct: 409 GDEGP----------PGISIPGPPGLDGQPGAPG----LPG--PPGPAGPHIPPSDEICE 452
Query: 186 PGCPYPPGGP 195
PG P PPG P
Sbjct: 453 PGPPGPPGSP 462
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYP--PNPSGYPGCPYPPGGP 195
GPP PG PG P G P P G PG P P G P
Sbjct: 1235 GPPGP---PGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPP 1272
Score = 30.4 bits (67), Expect = 2.9
Identities = 29/85 (34%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 140 PVFSRPISASYPPYQAT-GPPNTSYMPGM--------PGGISPYPSGYPPNPSGYPGCPY 190
P P PP A GPP PG P GIS P PP G PG P
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS-IPG--PPGLDGQPGAPG 432
Query: 191 PPGGPYPATTSSQYPSQPPVTTVGP 215
PG P PA P + GP
Sbjct: 433 LPGPPGPA--GPHIPPSDEICEPGP 455
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPN--PSGYPGCPYPPGGP 195
G P +PG PG PSG P + P G PG PPG P
Sbjct: 1321 GDPGLPGVPGFPG--MKGPSGVPGSAGPEGEPGLIGPPGPP 1359
Score = 29.6 bits (65), Expect = 4.9
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 139 PPVFSRPISASYP-PYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
P + P +P P GP G+PG P PP G+PG P PG P
Sbjct: 53 PGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Score = 29.6 bits (65), Expect = 4.9
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 22/70 (31%)
Query: 156 TGPPNTSYMPGMPGGISPYPS-----------GYPPNPS-----GYPGCPYPPGGPYPAT 199
TGPP G PG + P P G P P G+PG PPG P P
Sbjct: 336 TGPP------GPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPG 389
Query: 200 TSSQYPSQPP 209
+ P PP
Sbjct: 390 AAVMGPPGPP 399
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPS-----------GYPGCPYPPG 193
GPP G PG P P G P P G+PG P PPG
Sbjct: 740 GPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 29.3 bits (64), Expect = 6.4
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
GPP +PG P GI P P G PP P PG PPG P
Sbjct: 177 GPPGIQGLPG-PTGI-PGPIG-PPGP---PGLMGPPGPP 209
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 157 GPPNTSYMPGMPG-GISPYPSGYPPNPSGYPG--CPYPPGGP 195
GPP PG G P P G+ P P G PG P PPG P
Sbjct: 722 GPPGAPGTPGRIGLEGPPGPPGF-PGPKGEPGFALPGPPGPP 762
Score = 29.3 bits (64), Expect = 6.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 165 PGMPGGISPYPSGYPPNPSGYPGCPYPPG 193
PG+PG PP P G G P PPG
Sbjct: 1426 PGLPGQPGTRGLDGPPGPDGLQGPPGPPG 1454
Score = 28.9 bits (63), Expect = 8.3
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
G P PG+PG P P G PP P G G PG P P
Sbjct: 51 GFPGLEGHPGLPG--FPGPEG-PPGPRGQKGDDGIPGPPGP 88
Score = 28.9 bits (63), Expect = 8.3
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 164 MPGMPGGISPYP-SGYPPNP-----SGYPGCPYPPGGPYPATTSSQYPSQPPVTTVG-PS 216
+PG+PG P G P +P SG PG P PPG + P QP + +G P
Sbjct: 971 LPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG----PKGNPGLPGQPGL--IGPPG 1024
Query: 217 RDGTISE 223
GTI +
Sbjct: 1025 LKGTIGD 1031
Score = 28.9 bits (63), Expect = 8.3
Identities = 19/57 (33%), Positives = 21/57 (36%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
PP P S GPP PG+ G P P P+G PG P G P
Sbjct: 1358 PPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1414
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 43.5 bits (101), Expect = 3e-04
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 157 GPPNTSYMPGMPGGISPY-PSGY-PPNP------SGYPGCPYPPGGPYPATTSSQYPSQP 208
GPP +PG+PG I P P G+ PP P G G P PG P P Q +QP
Sbjct: 603 GPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 209 --PVTTVGPSRDGTI 221
P P RDG +
Sbjct: 663 GKPGLPGNPGRDGDV 677
Score = 40.8 bits (94), Expect = 0.002
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 157 GPPNTSYMPGMPG-----GISPYPSGYPPNPSGYPGCPYPPGGP-YPATTSSQYPSQPP 209
G P +PG+PG GI PP P G+PG P PPG P P + P PP
Sbjct: 684 GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP 742
Score = 36.6 bits (83), Expect = 0.040
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 152 PYQATGPPNTSYMPGMPGGISPYPSGYP--PNPSGYPGCPYPPGGPYPATTSSQYPSQPP 209
P +GPP +PG PG + G+P P P G G P G P PA + P QP
Sbjct: 1132 PKGISGPPGNPGLPGEPGPVG--GGGHPGQPGPPGEKGKPGQDGIPGPAGQKGE-PGQPG 1188
Query: 210 VTTVGP 215
GP
Sbjct: 1189 FGNPGP 1194
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPY-------PSGYPPNPSGYPGCPYP 191
PP F P P + GPP +PG G + P P G PP +G G P P
Sbjct: 741 PPGFPGP--KGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPG-PPGRTGLDGLPGP 797
Query: 192 PG--GPYPATTSSQYPSQPPVTTVGP 215
G GP P P + GP
Sbjct: 798 KGDVGPNGQPGPMGPPGLPGIGVQGP 823
Score = 35.0 bits (79), Expect = 0.12
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 155 ATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQ--PPVTT 212
A G P PG PG P PP G PG P P GG +P Q PP
Sbjct: 1114 AKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGG-------GGHPGQPGPPGEK 1166
Query: 213 VGPSRDG 219
P +DG
Sbjct: 1167 GKPGQDG 1173
Score = 33.9 bits (76), Expect = 0.26
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 152 PYQATGPPNTSYMPGMPG--------------GISPYPSGYPPNPSGYPGCPYPPGGP 195
P GPP S +PG PG GIS P P G PG P PG P
Sbjct: 1037 PQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNP 1094
Score = 33.5 bits (75), Expect = 0.34
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 157 GPPNTSYMPGMPG-GISPYPSGYP-----------PNPSGYPGCPYPPGGP 195
G P T +PGMPG +P P G P P G+PG PPG P
Sbjct: 99 GFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Score = 33.5 bits (75), Expect = 0.34
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 145 PISASYPPYQAT-GPPNTSYMPGMPGGIS----PYPSGYPPNPSGYPGCPYPPGGPYPAT 199
P S +P Q GPP M G PG I P P G P GYPG P G P P
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP----GYPGPPGIQGLPGPTG 189
Query: 200 TSSQYPSQPPVTTVGP 215
P +GP
Sbjct: 190 IPGPIGPPGPPGLMGP 205
Score = 33.5 bits (75), Expect = 0.34
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPS--GYPGCPYPPGGPYP 197
GPP PG+PG P G P P G G P PPG P P
Sbjct: 710 GPPGPKGFPGIPG-----PPGAPGTPGRIGLEGPPGPPGFPGP 747
Score = 33.5 bits (75), Expect = 0.34
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYP-----------PNPSGYPGCPYPPGGP-YPATTSSQY 204
GP PG PG +P P G P P G PG P P G P + Q
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG 1235
Query: 205 PSQPPVTTVGPSRDG 219
P PP + GP+ +G
Sbjct: 1236 PPGPP-GSPGPALEG 1249
Score = 33.1 bits (74), Expect = 0.44
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 157 GPPNTSYMPGMPGGISPY-------------PSGY--PPNPSGYPGCPYPPGGP 195
GP +PG PG I P P G PP PSG PG P PG P
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLP 1059
Score = 32.7 bits (73), Expect = 0.58
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 156 TGPPNTSYMPGMPGGISPYPSGYP-----------PNPSGYPGCPYPPGGP 195
+GPP +PG+PG P G+P P G PG P PG P
Sbjct: 490 SGPPGQPGLPGLPG--PPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAP 538
Score = 32.0 bits (71), Expect = 0.98
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 151 PPYQATGPPNTSYMPGMPGGISPYPSGYPPNP--------SGYPGCP------YPPGGPY 196
P GPP PG+PG +P P G P +P SG+PG PPG P
Sbjct: 851 PGLDVPGPPGERGSPGIPG--APGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPG 908
Query: 197 P 197
P
Sbjct: 909 P 909
Score = 32.0 bits (71), Expect = 0.98
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPGGIS-PYPSGYPPNPSGYPGCPYPPGGPYPA 198
P F P P +G +PG+PG P P G P G+PG PPG P
Sbjct: 1187 PGFGNPGPPGLPGL--SGQKGDGGLPGIPGNPGLPGPKG-EPGFHGFPGVQGPPGPPGSP 1243
Query: 199 TTSSQYPSQPPVTTVGPSRDG 219
+ + P P P R G
Sbjct: 1244 GPALEGPKGNPGPQGPPGRPG 1264
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPG 193
G P S PG+PG P P G P P G PG PPG
Sbjct: 991 GQPGLSGQPGLPG--PPGPKGNPGLP-GQPGLIGPPG 1024
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 26/70 (37%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSG----------Y 185
GDE P P GPP PG PG P PP P+G
Sbjct: 409 GDEGP----------PGISIPGPPGLDGQPGAPG----LPG--PPGPAGPHIPPSDEICE 452
Query: 186 PGCPYPPGGP 195
PG P PPG P
Sbjct: 453 PGPPGPPGSP 462
Score = 30.4 bits (67), Expect = 2.9
Identities = 29/85 (34%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 140 PVFSRPISASYPPYQAT-GPPNTSYMPGM--------PGGISPYPSGYPPNPSGYPGCPY 190
P P PP A GPP PG P GIS P PP G PG P
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS-IPG--PPGLDGQPGAPG 432
Query: 191 PPGGPYPATTSSQYPSQPPVTTVGP 215
PG P PA P + GP
Sbjct: 433 LPGPPGPA--GPHIPPSDEICEPGP 455
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPN--PSGYPGCPYPPGGP 195
G P +PG PG PSG P + P G PG PPG P
Sbjct: 1324 GDPGLPGVPGFPG--MKGPSGVPGSAGPEGEPGLIGPPGPP 1362
Score = 29.6 bits (65), Expect = 4.9
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 139 PPVFSRPISASYP-PYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
P + P +P P GP G+PG P PP G+PG P PG P
Sbjct: 53 PGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Score = 29.6 bits (65), Expect = 4.9
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 22/70 (31%)
Query: 156 TGPPNTSYMPGMPGGISPYPS-----------GYPPNPS-----GYPGCPYPPGGPYPAT 199
TGPP G PG + P P G P P G+PG PPG P P
Sbjct: 336 TGPP------GPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPG 389
Query: 200 TSSQYPSQPP 209
+ P PP
Sbjct: 390 AAVMGPPGPP 399
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPS-----------GYPGCPYPPG 193
GPP G PG P P G P P G+PG P PPG
Sbjct: 740 GPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPG 787
Score = 29.3 bits (64), Expect = 6.4
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
GPP +PG P GI P P G PP P PG PPG P
Sbjct: 177 GPPGIQGLPG-PTGI-PGPIG-PPGP---PGLMGPPGPP 209
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 157 GPPNTSYMPGMPG-GISPYPSGYPPNPSGYPG--CPYPPGGP 195
GPP PG G P P G+ P P G PG P PPG P
Sbjct: 722 GPPGAPGTPGRIGLEGPPGPPGF-PGPKGEPGFALPGPPGPP 762
Score = 29.3 bits (64), Expect = 6.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 165 PGMPGGISPYPSGYPPNPSGYPGCPYPPG 193
PG+PG PP P G G P PPG
Sbjct: 1429 PGLPGQPGTRGLDGPPGPDGLQGPPGPPG 1457
Score = 28.9 bits (63), Expect = 8.3
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 157 GPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
G P PG+PG P P G PP P G G PG P P
Sbjct: 51 GFPGLEGHPGLPG--FPGPEG-PPGPRGQKGDDGIPGPPGP 88
Score = 28.9 bits (63), Expect = 8.3
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 164 MPGMPGGISPYP-SGYPPNP-----SGYPGCPYPPGGPYPATTSSQYPSQPPVTTVG-PS 216
+PG+PG P G P +P SG PG P PPG + P QP + +G P
Sbjct: 971 LPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG----PKGNPGLPGQPGL--IGPPG 1024
Query: 217 RDGTISE 223
GTI +
Sbjct: 1025 LKGTIGD 1031
Score = 28.9 bits (63), Expect = 8.3
Identities = 19/57 (33%), Positives = 21/57 (36%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
PP P S GPP PG+ G P P P+G PG P G P
Sbjct: 1361 PPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1417
>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
sapiens]
Length = 406
Score = 42.7 bits (99), Expect = 6e-04
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 165 PGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTI 221
PG+PGG P S P G+PG P PPG P P + P ++ + R G +
Sbjct: 249 PGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPV 305
Score = 32.0 bits (71), Expect = 0.98
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 152 PYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPVT 211
P + GP + PGMPG P G P P G G P GP P + + + PV
Sbjct: 257 PPGSPGPKGSPGFPGMPG-----PPG-QPGPRGSMG----PMGPSPDLSHIKQGRRGPVG 306
Query: 212 TVG-PSRDGTISE 223
G P RDG+ E
Sbjct: 307 PPGAPGRDGSKGE 319
Score = 28.9 bits (63), Expect = 8.3
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 178 YPPNPSGYPGCPYPPGGPYPATTSSQYPSQP-PVTTVGP 215
Y P P G PG PPG P P S +P P P GP
Sbjct: 244 YLPGPPGLPGGQGPPGSPGP-KGSPGFPGMPGPPGQPGP 281
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.7 bits (99), Expect = 6e-04
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPY-P 197
PP P A P G P TS G P +P P+ PP+P G PG P P G P P
Sbjct: 1281 PPHKGAPNPAVVTPPSPKGGPATSPPKGAP---TP-PAATPPSPKGSPGTPPPKGAPTPP 1336
Query: 198 ATTSSQYPSQPPVTTVGPSRDG 219
A T P + PS G
Sbjct: 1337 AVTPPSPKGTPTLPATTPSSKG 1358
Score = 42.0 bits (97), Expect = 0.001
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPG--GISPYPSGYPPNPSGYPGCPYPPGGPYP 197
P P A PP A PP+ P P G P+ PP+P G P P P G P P
Sbjct: 954 PATPSPKWAPTPP--AATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTP 1011
Query: 198 ATTSSQYPSQPPVTTVGPSRDGT 220
+ P P T P T
Sbjct: 1012 PAVTPPSPKGSPAATPFPKGAST 1034
Score = 38.9 bits (89), Expect = 0.008
Identities = 31/84 (36%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPG--GISPYPSGYPPNPSGYPGCP--YPPGGP 195
P S P A PP A PP+ PG P G P+ PP+P G P P P
Sbjct: 1301 PATSPPKGAPTPP--AATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKG 1358
Query: 196 YPATTSSQYPSQPPVTTVGPSRDG 219
P T SS+ PP T PS G
Sbjct: 1359 GPTTPSSKEGPTPPAAT--PSHKG 1380
Score = 38.5 bits (88), Expect = 0.010
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPGG--ISPYPSGYPPNPSGYPGCPYPPGGPYP 197
P P A PP A PP+ P P P+ PP+P G P P P G P P
Sbjct: 931 PASPSPKGAPTPP--AATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTP 988
Query: 198 ATTSSQYPSQPPVT 211
+ P P T
Sbjct: 989 PAATPPSPKGGPAT 1002
Score = 36.6 bits (83), Expect = 0.040
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPG---MPGGISPYPSGYPPNPSGYPGC-PYPPGGP 195
P P A PP A PP+ P P G S P+ PP+P G P P P G P
Sbjct: 1000 PATPSPKGAPTPP--AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP 1057
Query: 196 YPATTSSQYPSQPPVT 211
+ P P T
Sbjct: 1058 TTPAATLPSPKGGPAT 1073
Score = 35.8 bits (81), Expect = 0.068
Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 130 VMIVVFGDEPPVFSRPISA------SYPPYQATGPPNTSYMPGMPG--GISPYPSGYPPN 181
V+ + F E P P A S P +A P +P P G P+ PP+
Sbjct: 890 VVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPS 949
Query: 182 PSGYPGCPYPPGGPYPATTSSQYPSQPPVT 211
P G P P P P P + P P T
Sbjct: 950 PKGGPATPSPKWAPTPPAATPPSPKGGPAT 979
Score = 35.8 bits (81), Expect = 0.068
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 145 PISASYPPYQATGPPNTSYMPG---MPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTS 201
P AS PP A PP+ P +P G P+ P+P G P P G P P +
Sbjct: 1029 PKGASTPP--AATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAAT 1086
Query: 202 SQYPSQPPVT 211
P P T
Sbjct: 1087 PPSPKGGPAT 1096
Score = 34.7 bits (78), Expect = 0.15
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 151 PPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYP 205
P P P + G +P P+ PP+P G P P P G P P + P
Sbjct: 1060 PAATLPSPKGGPATPSLKGAPTP-PAATPPSPKGGPATPSPKGAPMPPAATPPSP 1113
Score = 34.7 bits (78), Expect = 0.15
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 152 PYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPVT 211
P GP + P GG P+ PP+P P P P G P P + P T
Sbjct: 1363 PSSKEGPTPPAATPSHKGG----PAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPAT 1418
Query: 212 TVGPSRDGTISEDTIRASLISAVSDK 237
V T S+ + ++ VS K
Sbjct: 1419 PVTREGAATPSKGDLTPPAVTPVSLK 1444
Score = 33.1 bits (74), Expect = 0.44
Identities = 17/53 (32%), Positives = 19/53 (35%)
Query: 145 PISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
P A P P P G P+ PP+P G P P P G P P
Sbjct: 1214 PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTP 1266
Score = 32.7 bits (73), Expect = 0.58
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPA 198
PP + A+ PP G S P G P+ PP+P G P P G P
Sbjct: 1167 PPKGAPTTPAATPPSPKGGLATPS-----PKGAPTTPAATPPSPKGGLATPSPKGAP--- 1218
Query: 199 TTSSQYPSQPPVTTVGPSRDG 219
TT + P P PS G
Sbjct: 1219 TTPAATPPSPKGGLATPSPKG 1239
Score = 32.0 bits (71), Expect = 0.98
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 139 PPVFSRPISASYPPYQATG---PPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP 195
PP + A+ PP G PP P G P+ PP+P G P P G P
Sbjct: 1144 PPKGAPTTPAATPPSPKGGLATPP--------PKGAPTTPAATPPSPKGGLATPSPKGAP 1195
Query: 196 YPATTSSQYPSQPPVTTVGPSRDG 219
TT + P P PS G
Sbjct: 1196 ---TTPAATPPSPKGGLATPSPKG 1216
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGIS-PYPSGYPPNPSGYPGCPYPPGGPYP 197
PP ++ P T P T P GG++ P P G P P+ P P P GG P
Sbjct: 1202 PPSPKGGLATPSPKGAPTTPAATP--PSPKGGLATPSPKGAPTTPAATP--PSPKGG--P 1255
Query: 198 ATTSSQYPSQPPVTTVGPSRDGTIS 222
AT + PP T PS G ++
Sbjct: 1256 ATPPPKGAPTPPAAT-PPSLKGGLA 1279
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/67 (26%), Positives = 21/67 (31%)
Query: 145 PISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQY 204
P A P P P G P+ PP+P G P P G P +
Sbjct: 1191 PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPS 1250
Query: 205 PSQPPVT 211
P P T
Sbjct: 1251 PKGGPAT 1257
Score = 30.4 bits (67), Expect = 2.9
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPAT 199
P P A PP P G P+ PP+P G P P G P T
Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAP---T 1150
Query: 200 TSSQYPSQP 208
T + P P
Sbjct: 1151 TPAATPPSP 1159
Score = 29.6 bits (65), Expect = 4.9
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 145 PISASYPPYQATGPPNTSYMPGMPG--GISPYPSGYPPNPSGYPGCPYPPGGPYPATTSS 202
P P A PP+ P P G P+ PP+ G P G P PA +
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTP 1294
Query: 203 QYPSQPPVTT 212
P P T+
Sbjct: 1295 PSPKGGPATS 1304
Score = 29.3 bits (64), Expect = 6.4
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 140 PVFSRPISASYPPYQATGPPNTSYMPGMPG--GISPYPSGYPPNPSGYP-------GCPY 190
P P A PP A PP+ P P G P+ PP+P G P G
Sbjct: 977 PATPSPKGAPTPP--AATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAST 1034
Query: 191 PPGGPYPATTSSQYPSQPPVTTVGPS 216
PP P+ S P+ P+ P+
Sbjct: 1035 PPAATPPSPKGS--PAATPLPKGAPT 1058
Score = 28.9 bits (63), Expect = 8.3
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 148 ASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPS 206
A+ PP GP S P G P+ PP+P G G PP P T ++ PS
Sbjct: 1084 AATPPSPKGGPATPS-----PKGAPMPPAATPPSPKG--GLATPPHKGAPTTPAATPPS 1135
>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor
[Homo sapiens]
Length = 1419
Score = 42.4 bits (98), Expect = 7e-04
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 143 SRPISASYPPYQATGPPNTSYMPGMPGGISPYP-SGYPPNPSGYPGCPYPPGGPYPATTS 201
SR ASY Y+ N Y P PG S YP +GY NP YP P G YP
Sbjct: 491 SRQAQASY--YKFQNSDNPYYYPRTPGPASQYPYTGY--NPLQYP--VGPTNGVYPGPYY 544
Query: 202 SQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEE 261
YP+ P T+S + + + + +L R+ D + +L+ L +
Sbjct: 545 PGYPTPSGQYVCSPLPTSTMSPEEVEQHMRNLQQQELH-RLLRVADNQELQLSNLLSRDR 603
Query: 262 DLKKGHQKLEEMVTRLDQ 279
+G +K+ ++ L Q
Sbjct: 604 ISPEGLEKMAQLRAELLQ 621
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/84 (38%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGY-----------PG 187
PP SRP A PP PPN Y P P S PSG PP P P
Sbjct: 324 PPPPSRPSVAVPPP-----PPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPP 378
Query: 188 CPYPPGGPYPATTSSQYPSQPPVT 211
P PPG P P S Q P T
Sbjct: 379 PPPPPGPPPPPGLPSDGDHQVPTT 402
Score = 32.7 bits (73), Expect = 0.58
Identities = 21/62 (33%), Positives = 23/62 (37%)
Query: 154 QATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTV 213
QA PP S P P+ SG PP P+ G P PP P P P V
Sbjct: 275 QAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAV 334
Query: 214 GP 215
P
Sbjct: 335 PP 336
Score = 28.9 bits (63), Expect = 8.3
Identities = 28/88 (31%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSG---YPPNPSGYP-----G 187
G PP SR +A+ PP PP P P P P YPP P P G
Sbjct: 308 GAPPPPPSRAPTAAPPP-----PP-----PSRPSVAVPPPPPNRMYPPPPPALPSSAPSG 357
Query: 188 CPYPPGGPYPATTSSQYPSQPPVTTVGP 215
P PP + P PP GP
Sbjct: 358 PPPPPPSVLGVGPVAPPPPPPPPPPPGP 385
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/85 (38%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 151 PPYQATGPPNTSYMPGMPGGISPY----PSGYPPNPSGYPGCPYPPGGP----YPATTSS 202
PP Q G P T +PG G I P+ P G P P G PG PPG P P T +
Sbjct: 561 PPGQQ-GTPGTQGLPGPQGAIGPHGEKGPQGKPGLP-GMPGSDGPPGHPGKEGPPGTKGN 618
Query: 203 QYPSQPPVTTVGPSRDGTISEDTIR 227
Q PS P P G D IR
Sbjct: 619 QGPSGPQGPLGYPGPRGVKGVDGIR 643
Score = 33.9 bits (76), Expect = 0.26
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 156 TGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGP----YPATTSSQYPSQPPVT 211
TGPP G PG + P + P G G P PPG P P T + P
Sbjct: 832 TGPP------GPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGP 885
Query: 212 TVGPSRDG 219
P +DG
Sbjct: 886 PGAPGKDG 893
Score = 31.6 bits (70), Expect = 1.3
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 155 ATGPPNTSYMPGMPGGISPYPSGY---PPNPSGYPGCPYPPGGPYPATTSSQ-YPSQPPV 210
A+GP PG+PG P + P P G G PPG P P Q P Q P
Sbjct: 1365 ASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPK 1424
Query: 211 TTVGPSRDGT--ISEDTI-----------RASLISAVSDKLRWRMKEEMDRAQAELNALK 257
T S DG+ + ED I D LR + E+M R ++
Sbjct: 1425 KT-RRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEI-EQMRRPTGTQDSPA 1482
Query: 258 RTEEDLKKGHQKLEE 272
RT +DLK H +L +
Sbjct: 1483 RTCQDLKLCHPELPD 1497
Score = 30.0 bits (66), Expect = 3.7
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 152 PYQATGPPNTSYMPGMPGGISPY-PSGYP-----PNPSGYPGCPYPPG 193
P G S PG PG P P+G P P G+PG P PPG
Sbjct: 1146 PRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPG 1193
Score = 29.3 bits (64), Expect = 6.4
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 138 EPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYP 197
EP V + PP GP PG+ G P P G G P G P P
Sbjct: 301 EPAVLEPGMLVEGPP-GPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGP 359
Query: 198 ATTSSQYP 205
TS P
Sbjct: 360 PGTSLMLP 367
Score = 29.3 bits (64), Expect = 6.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 156 TGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPG 193
+GPP + PG G SG P P G PG PPG
Sbjct: 922 SGPPGPAGSPGERGAAG---SGGPIGPPGRPGPQGPPG 956
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,233,842
Number of Sequences: 37866
Number of extensions: 1081819
Number of successful extensions: 14109
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 840
Number of HSP's that attempted gapping in prelim test: 6549
Number of HSP's gapped (non-prelim): 6479
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.