Guide to the Human Genome
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Name: PSME1 Sequence: fasta or formatted (249aa) NCBI GI: 5453990
Description:

proteasome activator subunit 1 isoform 1

Referenced in:

Interferon
Proteasome

Other entries for this name:
alt prot [250aa] proteasome activator subunit 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         14           2
 C cysteine            1.2          3           1
 D aspartate           6.4         16           1
 E glutamate          11.6         29           2
 F phenylalanine       3.2          8           1
 G glycine             4.4         11           1
 H histidine           1.6          4           1
 I isoleucine          5.2         13           2
 K lysine             12.0         30           3
 L leucine            10.4         26           2
 M methionine          2.4          6           1
 N asparagine          4.4         11           2
 P proline             5.6         14           2
 Q glutamine           4.8         12           2
 R arginine            4.4         11           1
 S serine              2.4          6           1
 T threonine           3.6          9           2
 V valine              7.2         18           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteasome activator subunit 1 isoform 1 
PSME1                 0.892   proteasome activator subunit 1 isoform 2 
PSME2                 0.420   proteasome activator subunit 2 
PSME3                 0.378   proteasome activator subunit 3 isoform 1 
PSME3                 0.359   proteasome activator subunit 3 isoform 2 
SPEF2                 0.038   KPL2 protein isoform 1 
PRDM2                 0.030   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.030   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.030   retinoblastoma protein-binding zinc finger protein i...
AP3D1                 0.030   adaptor-related protein complex 3, delta 1 subunit ...
KIAA1529              0.027   hypothetical protein LOC57653 
BRD3                  0.027   bromodomain containing protein 3 
SMAP1                 0.027   stromal membrane-associated GTPase-activating prote...
SUPT16H               0.025   chromatin-specific transcription elongation factor la...
OS9                   0.025   osteosarcoma amplified 9 isoform 2 precursor 
OS9                   0.025   osteosarcoma amplified 9 isoform 1 precursor 
LOC728792             0.025   PREDICTED: hypothetical protein 
MYH10                 0.023   myosin, heavy polypeptide 10, non-muscle 
HOMER2                0.023   homer 2 isoform 3 
PSMD1                 0.023   proteasome 26S non-ATPase subunit 1 
RYR2                  0.023   cardiac muscle ryanodine receptor 
PRKCSH                0.023   protein kinase C substrate 80K-H isoform 1 
SRRM1                 0.023   serine/arginine repetitive matrix 1 
RGAG4                 0.021   retrotransposon gag domain containing 4 
OS9                   0.021   osteosarcoma amplified 9 isoform 4 precursor 
OS9                   0.021   osteosarcoma amplified 9 isoform 3 precursor 
LOC100294364          0.021   PREDICTED: hypothetical protein 
NEFM                  0.021   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.021   neurofilament, medium polypeptide 150kDa isoform 2 ...
MRVI1                 0.021   JAW1-related protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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