Guide to the Human Genome
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Name: PSME3 Sequence: fasta or formatted (254aa) NCBI GI: 30410794
Description:

proteasome activator subunit 3 isoform 1

Referenced in:

Proteasome

Other entries for this name:
alt prot [267aa] proteasome activator subunit 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         10           2
 C cysteine            0.8          2           1
 D aspartate           6.3         16           1
 E glutamate           9.8         25           2
 F phenylalanine       2.8          7           2
 G glycine             2.4          6           1
 H histidine           2.0          5           1
 I isoleucine          8.7         22           2
 K lysine              8.3         21           2
 L leucine            11.8         30           2
 M methionine          2.4          6           1
 N asparagine          4.7         12           2
 P proline             4.3         11           1
 Q glutamine           3.5          9           2
 R arginine            5.9         15           2
 S serine              6.3         16           2
 T threonine           5.1         13           1
 V valine              7.1         18           1
 W tryptophan          0.4          1           1
 Y tyrosine            3.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteasome activator subunit 3 isoform 1 
PSME3                 0.979   proteasome activator subunit 3 isoform 2 
PSME1                 0.378   proteasome activator subunit 1 isoform 1 
PSME1                 0.327   proteasome activator subunit 1 isoform 2 
PSME2                 0.291   proteasome activator subunit 2 
NEFL                  0.021   neurofilament, light polypeptide 68kDa 
CGNL1                 0.011   cingulin-like 1 
PPP2R4                0.011   protein phosphatase 2A, regulatory subunit B' isofor...
MYH15                 0.008   myosin, heavy polypeptide 15 
DOCK10                0.008   dedicator of cytokinesis 10 
FAM160A1              0.008   hypothetical protein LOC729830 
SPINK5                0.006   serine peptidase inhibitor, Kazal type 5 isoform c ...
SPINK5                0.006   serine peptidase inhibitor, Kazal type 5 isoform b p...
SPINK5                0.006   serine peptidase inhibitor, Kazal type 5 isoform a ...
IFT88                 0.006   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.006   intraflagellar transport 88 homolog isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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