PSME1 25285

Name: PSME1	Sequence: fasta or formatted (250aa)		NCBI GI: 30581141
Description: proteasome activator subunit 1 isoform 2		Referenced in: Interferon Proteasome
Other entries for this name: alt prot [249aa] proteasome activator subunit 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 15 2 C cysteine 1.2 3 1 D aspartate 6.0 15 1 E glutamate 10.8 27 2 F phenylalanine 2.8 7 1 G glycine 5.6 14 2 H histidine 2.0 5 1 I isoleucine 4.0 10 1 K lysine 10.0 25 3 L leucine 10.4 26 2 M methionine 2.0 5 1 N asparagine 4.0 10 2 P proline 5.2 13 2 Q glutamine 7.2 18 2 R arginine 6.0 15 2 S serine 3.2 8 1 T threonine 4.0 10 2 V valine 7.2 18 2 W tryptophan 0.4 1 1 Y tyrosine 2.0 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome activator subunit 1 isoform 2 PSME1 0.891 proteasome activator subunit 1 isoform 1 PSME2 0.368 proteasome activator subunit 2 PSME3 0.326 proteasome activator subunit 3 isoform 1 PSME3 0.307 proteasome activator subunit 3 isoform 2 SPEF2 0.038 KPL2 protein isoform 1 PRDM2 0.029 retinoblastoma protein-binding zinc finger protein i... PRDM2 0.029 retinoblastoma protein-binding zinc finger protein i... PRDM2 0.029 retinoblastoma protein-binding zinc finger protein i... AP3D1 0.029 adaptor-related protein complex 3, delta 1 subunit ... KIAA1529 0.027 hypothetical protein LOC57653 BRD3 0.027 bromodomain containing protein 3 SMAP1 0.027 stromal membrane-associated GTPase-activating prote... SUPT16H 0.025 chromatin-specific transcription elongation factor la... OS9 0.025 osteosarcoma amplified 9 isoform 2 precursor OS9 0.025 osteosarcoma amplified 9 isoform 1 precursor LOC728792 0.025 PREDICTED: hypothetical protein PSMD1 0.023 proteasome 26S non-ATPase subunit 1 RYR2 0.023 cardiac muscle ryanodine receptor PRKCSH 0.023 protein kinase C substrate 80K-H isoform 1 SRRM1 0.023 serine/arginine repetitive matrix 1 HOMER2 0.021 homer 2 isoform 3 RGAG4 0.021 retrotransposon gag domain containing 4 OS9 0.021 osteosarcoma amplified 9 isoform 4 precursor OS9 0.021 osteosarcoma amplified 9 isoform 3 precursor LOC100294364 0.021 PREDICTED: hypothetical protein NEFM 0.021 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.021 neurofilament, medium polypeptide 150kDa isoform 2 ... DEK 0.021 DEK oncogene isoform 1 MRVI1 0.021 JAW1-related protein isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.