| Name: PSMD1 | Sequence: fasta or formatted (953aa) | NCBI GI: 25777600 | |
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Description: proteasome 26S non-ATPase subunit 1
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Referenced in:
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 8.4 80 2 C cysteine 1.9 18 2 D aspartate 5.7 54 2 E glutamate 8.3 79 4 F phenylalanine 3.4 32 1 G glycine 6.0 57 3 H histidine 2.2 21 1 I isoleucine 6.0 57 3 K lysine 7.3 70 3 L leucine 10.4 99 2 M methionine 3.0 29 1 N asparagine 4.7 45 3 P proline 4.4 42 2 Q glutamine 4.1 39 2 R arginine 3.3 31 2 S serine 5.9 56 2 T threonine 4.9 47 2 V valine 6.6 63 2 W tryptophan 0.5 5 1 Y tyrosine 3.0 29 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 proteasome 26S non-ATPase subunit 1 PSMD2 0.028 proteasome 26S non-ATPase subunit 2 TAF3 0.013 RNA polymerase II transcription factor TAFII140 [Ho... AP3D1 0.012 adaptor-related protein complex 3, delta 1 subunit ... LOC100133698 0.011 PREDICTED: hypothetical protein LOC100294088 0.011 PREDICTED: hypothetical protein, partial MAP1B 0.011 microtubule-associated protein 1B UPF2 0.010 UPF2 regulator of nonsense transcripts homolog [Homo... UPF2 0.010 UPF2 regulator of nonsense transcripts homolog [Homo... MYST4 0.010 MYST histone acetyltransferase (monocytic leukemia)... SHROOM4 0.009 shroom family member 4 WDR87 0.009 NYD-SP11 protein HMGB1 0.009 high-mobility group box 1 LOC100294364 0.009 PREDICTED: hypothetical protein LOC645490 0.009 PREDICTED: similar to hCG1991922 SMARCA1 0.009 SWI/SNF-related matrix-associated actin-dependent r... SMARCA1 0.009 SWI/SNF-related matrix-associated actin-dependent re... PHF14 0.009 PHD finger protein 14 isoform 2 PHF14 0.009 PHD finger protein 14 isoform 1 NEFH 0.009 neurofilament, heavy polypeptide 200kDa HSP90AA1 0.009 heat shock 90kDa protein 1, alpha isoform 2 HSP90AA1 0.009 heat shock 90kDa protein 1, alpha isoform 1 AP3D1 0.009 adaptor-related protein complex 3, delta 1 subunit ... ANKHD1 0.008 ankyrin repeat and KH domain containing 1 isoform 1 ... ANKHD1-EIF4EBP3 0.008 ANKHD1-EIF4EBP3 protein BAT2D1 0.008 HBxAg transactivated protein 2 PRDM2 0.008 retinoblastoma protein-binding zinc finger protein i... PRDM2 0.008 retinoblastoma protein-binding zinc finger protein i... PRDM2 0.008 retinoblastoma protein-binding zinc finger protein i... CHAF1A 0.008 chromatin assembly factor 1, subunit A (p150)Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
