Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GPD2 Sequence: fasta or formatted (727aa) NCBI GI: 133908614
Description:

glycerol-3-phosphate dehydrogenase 2, mitochondrial

Referenced in:

Calmodulin and Calcium
Mitochondria

Other entries for this name:
alt mRNA [727aa] glycerol-3-phosphate dehydrogenase 2, mitochondrial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         64           3
 C cysteine            1.2          9           1
 D aspartate           6.1         44           2
 E glutamate           5.9         43           2
 F phenylalanine       2.6         19           2
 G glycine             6.9         50           3
 H histidine           2.1         15           2
 I isoleucine          5.6         41           1
 K lysine              6.1         44           2
 L leucine             9.8         71           2
 M methionine          2.8         20           1
 N asparagine          3.3         24           1
 P proline             4.0         29           2
 Q glutamine           3.9         28           1
 R arginine            5.9         43           2
 S serine              6.6         48           2
 T threonine           5.6         41           2
 V valine              7.8         57           2
 W tryptophan          1.2          9           2
 Y tyrosine            3.9         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycerol-3-phosphate dehydrogenase 2, mitochondrial... 
GPD2                  1.000   glycerol-3-phosphate dehydrogenase 2, mitochondrial...
CABP1                 0.017   calcium binding protein 1 isoform 2 
CALM3                 0.016   calmodulin 3 
CALM2                 0.016   calmodulin 2 
CABP1                 0.016   calcium binding protein 1 isoform 1 
CALM1                 0.016   calmodulin 1 
CABP1                 0.016   calcium binding protein 1 isoform 3 
CALML5                0.015   calmodulin-like 5 
DMGDH                 0.015   dimethylglycine dehydrogenase precursor 
CALML3                0.014   calmodulin-like 3 
PPEF2                 0.014   serine/threonine protein phosphatase with EF-hand mo...
CABP7                 0.013   calcium binding protein 7 
PLCD4                 0.013   phospholipase C, delta 4 
CABP5                 0.013   calcium binding protein 5 
CALN1                 0.013   calneuron 1 isoform 2 
CALN1                 0.013   calneuron 1 isoform 1 
PLS1                  0.013   plastin 1 
PLS1                  0.013   plastin 1 
CETN2                 0.012   caltractin 
PPEF1                 0.012   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.012   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.012   protein phosphatase with EF hand calcium-binding dom...
CETN1                 0.012   centrin 1 
RHBDL3                0.012   rhomboid protease 3 
TNNC1                 0.012   troponin C, slow 
CABP4                 0.011   calcium binding protein 4 
SLC25A24              0.011   solute carrier family 25 member 24 isoform 1 
AIF1                  0.011   allograft inflammatory factor 1 isoform 3 
CABP2                 0.011   calcium binding protein 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press