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Search of human proteins with 13376826
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376826 UL16 binding protein 1 [Homo sapiens]
(244 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376826 UL16 binding protein 1 [Homo sapiens] 519 e-148
gi|130484306 retinoic acid early transcript 1G [Homo sapiens] 299 1e-81
gi|126723295 retinoic acid early transcript 1L [Homo sapiens] 296 1e-80
gi|13376824 UL16 binding protein 2 [Homo sapiens] 292 2e-79
gi|13375656 UL16 binding protein 3 [Homo sapiens] 266 1e-71
gi|21040249 retinoic acid early transcript 1E [Homo sapiens] 159 2e-39
gi|4504417 major histocompatibility complex, class I-related [Ho... 70 2e-12
gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens] 55 4e-08
gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sap... 54 9e-08
gi|17986001 major histocompatibility complex, class I, B precurs... 53 2e-07
gi|24797067 major histocompatibility complex, class I, A precurs... 50 1e-06
gi|167857788 MHC class I polypeptide-related sequence B [Homo sa... 50 1e-06
gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [H... 50 2e-06
gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Hom... 50 2e-06
gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa... 50 2e-06
gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sa... 50 2e-06
gi|4504415 major histocompatibility complex, class I, G precurso... 46 3e-05
gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sa... 45 8e-05
gi|52630342 major histocompatibility complex, class I, C precurs... 44 1e-04
gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sa... 40 0.002
gi|4557751 MHC class I polypeptide-related sequence A [Homo sapi... 38 0.009
gi|24797076 major histocompatibility complex, class II, DP beta ... 29 3.3
gi|71999153 hypothetical protein LOC23334 [Homo sapiens] 28 5.6
gi|17986005 major histocompatibility complex, class II, DR beta ... 28 7.3
gi|239756837 PREDICTED: similar to pleckstrin homology domain co... 28 7.3
gi|239751418 PREDICTED: hypothetical protein XP_002347841 [Homo ... 28 7.3
gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens] 28 9.5
>gi|13376826 UL16 binding protein 1 [Homo sapiens]
Length = 244
Score = 519 bits (1337), Expect = e-148
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP
Sbjct: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
Query: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT
Sbjct: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
Query: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM
Sbjct: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
Query: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCFI 240
FFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCFI
Sbjct: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCFI 240
Query: 241 LAGR 244
LAGR
Sbjct: 241 LAGR 244
>gi|130484306 retinoic acid early transcript 1G [Homo sapiens]
Length = 334
Score = 299 bits (766), Expect = 1e-81
Identities = 147/246 (59%), Positives = 175/246 (71%), Gaps = 4/246 (1%)
Query: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
MAAAASPAFLL LPLL LLS W R G D H LCYD + PK RP P+WC VQG VDE+
Sbjct: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
Query: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
FLHYDC + + LGKK+NVT W+ Q LR+VVD L QLLDIQ+EN IP EPLT
Sbjct: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
Query: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
LQARMSCE +A GHG GSWQ F+GQ FLLFDS NR WT +HPGA+KM EKWE ++D+TM
Sbjct: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
Query: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPT--KPPSLAPGTTQPKAMATTLSPWSLLIIFLC 238
F IS+GDC WLE+FLM + L+P+ PP+++ GT QP+A ATTL LLI +C
Sbjct: 181 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLI--MC 238
Query: 239 FILAGR 244
++ R
Sbjct: 239 LLICSR 244
>gi|126723295 retinoic acid early transcript 1L [Homo sapiens]
Length = 246
Score = 296 bits (758), Expect = 1e-80
Identities = 148/245 (60%), Positives = 171/245 (69%), Gaps = 2/245 (0%)
Query: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
MAAAA PA LLCLPLL LL GWSRA D H LCYD + PK RP P+WC VQG VDE+
Sbjct: 1 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
Query: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
FLHYDC N + LGKK+NVT W+ Q LR+VVD L QLLDIQ+EN P EPLT
Sbjct: 61 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT 120
Query: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
LQARMSCE +A GH GSWQF +GQ FLLFDS R WT +HPGA+KM EKWE ++DV M
Sbjct: 121 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM 180
Query: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPT--KPPSLAPGTTQPKAMATTLSPWSLLIIFLC 238
F IS+GDC WLE+FLM + L+P+ P +++ GTTQ +A ATTL LLII C
Sbjct: 181 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC 240
Query: 239 FILAG 243
FIL G
Sbjct: 241 FILPG 245
>gi|13376824 UL16 binding protein 2 [Homo sapiens]
Length = 246
Score = 292 bits (748), Expect = 2e-79
Identities = 146/245 (59%), Positives = 170/245 (69%), Gaps = 2/245 (0%)
Query: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
MAAAA+ LLCLPLL LLSGWSRAG D H LCYD + PK RP P+WC VQG VDE+
Sbjct: 1 MAAAAATKILLCLPLLLLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
Query: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
FLHYDC N + LGKK+NVT W+ Q LR+VVD L QL DIQ+EN P EPLT
Sbjct: 61 FLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPLT 120
Query: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
LQARMSCE +A GH GSWQF F+GQ FLLFDS R WT +HPGA+KM EKWE ++ V M
Sbjct: 121 LQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVAM 180
Query: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPT--KPPSLAPGTTQPKAMATTLSPWSLLIIFLC 238
F S+GDC WLE+FLM + L+P+ P +++ GTTQ +A ATTL LLII C
Sbjct: 181 SFHYFSMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC 240
Query: 239 FILAG 243
FIL G
Sbjct: 241 FILPG 245
>gi|13375656 UL16 binding protein 3 [Homo sapiens]
Length = 244
Score = 266 bits (680), Expect = 1e-71
Identities = 134/244 (54%), Positives = 170/244 (69%), Gaps = 2/244 (0%)
Query: 1 MAAAASPAFLLCLPLL-HLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDER 59
MAAAASPA L L +L +LL WS G D H L Y+F I R QWCEVQ VD++
Sbjct: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
Query: 60 PFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPL 119
FL YDC + K + L +++ T W +Q E LR+V L+ +L D ++E+ P PL
Sbjct: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
Query: 120 TLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVT 179
TLQ RMSCE EA G+ RGSWQF F+G+KFLLFDSNNRKWT +H GA++M EKWEK+ +T
Sbjct: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
Query: 180 MFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCF 239
FF+ +S+ DCK WL +FLM+ ++ L+PT PP++APG QPKA+ATTLSPWS LII LCF
Sbjct: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLII-LCF 239
Query: 240 ILAG 243
IL G
Sbjct: 240 ILPG 243
>gi|21040249 retinoic acid early transcript 1E [Homo sapiens]
Length = 263
Score = 159 bits (403), Expect = 2e-39
Identities = 93/243 (38%), Positives = 132/243 (54%), Gaps = 6/243 (2%)
Query: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
++ +SP LL LL L++ G H LC++F I SRP WCE Q +++
Sbjct: 4 ISLTSSPVRLLLFLLLLLIALEIMVGG---HSLCFNFTIKSLSRPGQPWCEAQVFLNKNL 60
Query: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
FL Y+ N+ K LGKKV T TW E T+TL +V L+ L DI+ + + +P T
Sbjct: 61 FLQYNSDNNMVKPLGLLGKKVYATSTWGELTQTLGEVGRDLRMLLCDIKPQ-IKTSDPST 119
Query: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
LQ M C+ EA SWQF NG+K LLFD+ N WT ++ A K+ E W+K+R +
Sbjct: 120 LQVEMFCQREAERCTGASWQFATNGEKSLLFDAMNMTWTVINHEASKIKETWKKDRGLEK 179
Query: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCFI 240
+F+K+S GDC WL EFL +WE M +PT P A + ++ W +L F+ +
Sbjct: 180 YFRKLSKGDCDHWLREFLGHWEAMPEPTVSPVNASDIHW--SSSSLPDRWIILGAFILLV 237
Query: 241 LAG 243
L G
Sbjct: 238 LMG 240
>gi|4504417 major histocompatibility complex, class I-related [Homo
sapiens]
Length = 341
Score = 69.7 bits (169), Expect = 2e-12
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Query: 47 PQWCEVQGLVDERPFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLL 106
P++ V G VD P YD V + + A + WE T+ LR K +L
Sbjct: 42 PEFISV-GYVDSHPITTYDSVTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELK 100
Query: 107 DIQVENLIPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAK 166
+Q + T Q + CE G G Q+ ++GQ FL+F+ + W A+ A
Sbjct: 101 RLQ-RHYNHSGSHTYQRMIGCELLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAH 159
Query: 167 KMTEKWEKNRDVTMFFQKISLGDCKMWLEEFLMYWEQMLDPTKPP 211
+ + WE N+ ++ + +C WL+ FL Y + L T+PP
Sbjct: 160 TIKQAWEANQHELLYQKNWLEEECIAWLKRFLEYGKDTLQRTEPP 204
>gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens]
Length = 298
Score = 55.5 bits (132), Expect = 4e-08
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 1/160 (0%)
Query: 54 GLVDERPFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENL 113
G +++ F Y+ + K++ L ++V + W++ ++ + D L DI
Sbjct: 51 GSLNDLQFFRYNSKDRKSQPMG-LWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYN 109
Query: 114 IPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWE 173
LQ R CE E + W++ ++G+ ++ F+ W P A+ +KWE
Sbjct: 110 DSNGSHVLQGRFGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWE 169
Query: 174 KNRDVTMFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSL 213
+ +C L ++L Y + +LD PPS+
Sbjct: 170 AEPVYVQRAKAYLEEECPATLRKYLKYSKNILDRQDPPSV 209
>gi|4504377 hemochromatosis protein isoform 1 precursor [Homo
sapiens]
Length = 348
Score = 54.3 bits (129), Expect = 9e-08
Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 4/227 (1%)
Query: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
M A PA LL L+ L + + + +H L Y F+ + E G VD++
Sbjct: 1 MGPRARPALLL---LMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQL 57
Query: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
F+ YD + + + ++ W + +++L+ I + E T
Sbjct: 58 FVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHT 117
Query: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
LQ + CE + G W++ ++GQ L F + W A P A +WE+++
Sbjct: 118 LQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRAR 177
Query: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTL 227
+ DC L++ L +LD PP L T + TTL
Sbjct: 178 QNRAYLERDCPAQLQQLLELGRGVLDQQVPP-LVKVTHHVTSSVTTL 223
>gi|17986001 major histocompatibility complex, class I, B precursor
[Homo sapiens]
Length = 362
Score = 53.1 bits (126), Expect = 2e-07
Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 18/216 (8%)
Query: 27 WVDTHCLCYDFI-ITPKSRPEPQWCEVQGLVDERPFLHYDC------VNHKAKAFASLGK 79
W +H + Y + ++ R EP++ V G VD+ F+ +D +A G
Sbjct: 23 WAGSHSMRYFYTSVSRPGRGEPRFISV-GYVDDTQFVRFDSDAASPREEPRAPWIEQEGP 81
Query: 80 KV--NVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLTLQARMSCEHEAHGHG-R 136
+ T+ ++ Q +T R+ + L+G N TLQ+ C+ G R
Sbjct: 82 EYWDRNTQIYKAQAQTDRESLRNLRGYY------NQSEAGSHTLQSMYGCDVGPDGRLLR 135
Query: 137 GSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTMFFQKISLGDCKMWLEE 196
G Q+ ++G+ ++ + + R WTA A+ KWE R+ + G+C WL
Sbjct: 136 GHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLE-GECVEWLRR 194
Query: 197 FLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSL 232
+L + L+ PP TL W+L
Sbjct: 195 YLENGKDKLERADPPKTHVTHHPISDHEATLRCWAL 230
>gi|24797067 major histocompatibility complex, class I, A precursor
[Homo sapiens]
Length = 365
Score = 50.4 bits (119), Expect = 1e-06
Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 20/230 (8%)
Query: 15 LLHLLSGWSRAG--WVDTHCLCYDFI-ITPKSRPEPQWCEVQGLVDERPFLHYDC----- 66
LL LLSG W +H + Y F ++ R EP++ V G VD+ F+ +D
Sbjct: 9 LLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAV-GYVDDTQFVRFDSDAASQ 67
Query: 67 -VNHKAKAFASLGKKV--NVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLTLQA 123
+ +A G + T+ + Q++T R + L+G N T+Q
Sbjct: 68 RMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYY------NQSEAGSHTIQI 121
Query: 124 RMSCEHEAHGHG-RGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTMFF 182
C+ + G RG Q ++G+ ++ + + R WTA A+ KWE +
Sbjct: 122 MYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLR 181
Query: 183 QKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSL 232
+ G C WL +L ++ L T PP TL W+L
Sbjct: 182 AYLD-GTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWAL 230
>gi|167857788 MHC class I polypeptide-related sequence B [Homo
sapiens]
Length = 383
Score = 50.4 bits (119), Expect = 1e-06
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 8/179 (4%)
Query: 25 AGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERPFLHYDCVNHKAKAFASLGKKVNVT 84
A + H L Y+ ++ + +G +D +PFL YD +AK + V
Sbjct: 20 AAAAEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYDRQKRRAKPQGQWAENVLGA 79
Query: 85 KTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLTLQARMSCEHEAHGHGRGSWQFLFN 144
KTW+ +TE L + L+ L I+ + +LQ CE RGS F ++
Sbjct: 80 KTWDTETEDLTENGQDLRRTLTHIKDQK---GGLHSLQEIRVCEIHEDSSTRGSRHFYYD 136
Query: 145 GQKFLLFDSNNRKWTALHPG-----AKKMTEKWEKNRDVTMFFQKISLGDCKMWLEEFL 198
G+ FL + ++ T A +T W+++ T + DC L+ +L
Sbjct: 137 GELFLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQRYL 195
>gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 49.7 bits (117), Expect = 2e-06
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 18/210 (8%)
Query: 39 ITPKSRPEPQ----WCEVQGLVDERPFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETL 94
+T S P P W V G + + +L Y+ + +A+ + + V+ WE++T L
Sbjct: 34 LTAVSSPAPGTPAFW--VSGWLGPQQYLSYNSLRGEAEPCGAWVWENQVSWYWEKETTDL 91
Query: 95 RDVVDFLKGQLLDIQVENLIPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSN 154
R +K +L + L P TLQ + CE + +F NG++F+ FD
Sbjct: 92 R-----IKEKLFLEAFKALGGKGPYTLQGLLGCELGPDNTSVPTAKFALNGEEFMNFDLK 146
Query: 155 NRKWTALHPGAKKMTEKWEKNRDVTMFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSL- 213
W P A ++++W++ L C L E L L+ +PPS+
Sbjct: 147 QGTWGGDWPEALAISQRWQQQDKAANKELTFLLFSCPHRLREHLERGRGNLEWKEPPSMR 206
Query: 214 ------APGTTQPKAMATTLSPWSLLIIFL 237
+PG + A + P L + FL
Sbjct: 207 LKARPSSPGFSVLTCSAFSFYPPELQLRFL 236
>gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 49.7 bits (117), Expect = 2e-06
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 18/210 (8%)
Query: 39 ITPKSRPEPQ----WCEVQGLVDERPFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETL 94
+T S P P W V G + + +L Y+ + +A+ + + V+ WE++T L
Sbjct: 34 LTAVSSPAPGTPAFW--VSGWLGPQQYLSYNSLRGEAEPCGAWVWENQVSWYWEKETTDL 91
Query: 95 RDVVDFLKGQLLDIQVENLIPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSN 154
R +K +L + L P TLQ + CE + +F NG++F+ FD
Sbjct: 92 R-----IKEKLFLEAFKALGGKGPYTLQGLLGCELGPDNTSVPTAKFALNGEEFMNFDLK 146
Query: 155 NRKWTALHPGAKKMTEKWEKNRDVTMFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSL- 213
W P A ++++W++ L C L E L L+ +PPS+
Sbjct: 147 QGTWGGDWPEALAISQRWQQQDKAANKELTFLLFSCPHRLREHLERGRGNLEWKEPPSMR 206
Query: 214 ------APGTTQPKAMATTLSPWSLLIIFL 237
+PG + A + P L + FL
Sbjct: 207 LKARPSSPGFSVLTCSAFSFYPPELQLRFL 236
>gi|21040353 hemochromatosis protein isoform 9 precursor [Homo
sapiens]
Length = 325
Score = 49.7 bits (117), Expect = 2e-06
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 1/174 (0%)
Query: 54 GLVDERPFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENL 113
G VD++ F+ YD + + + ++ W + +++L+ I +
Sbjct: 28 GYVDDQLFVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHN 87
Query: 114 IPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWE 173
E TLQ + CE + G W++ ++GQ L F + W A P A +WE
Sbjct: 88 HSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWE 147
Query: 174 KNRDVTMFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTL 227
+++ + DC L++ L +LD PP L T + TTL
Sbjct: 148 RHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPP-LVKVTHHVTSSVTTL 200
>gi|21040347 hemochromatosis protein isoform 6 precursor [Homo
sapiens]
Length = 334
Score = 49.7 bits (117), Expect = 2e-06
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 3/206 (1%)
Query: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
M A PA LL L+ L + + + +H L Y F+ + E G VD++
Sbjct: 1 MGPRARPALLL---LMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQL 57
Query: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
F+ YD + + + ++ W + +++L+ I + E T
Sbjct: 58 FVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHT 117
Query: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
LQ + CE + G W++ ++GQ L F + W A P A +WE+++
Sbjct: 118 LQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRAR 177
Query: 181 FFQKISLGDCKMWLEEFLMYWEQMLD 206
+ DC L++ L +LD
Sbjct: 178 QNRAYLERDCPAQLQQLLELGRGVLD 203
>gi|4504415 major histocompatibility complex, class I, G precursor
[Homo sapiens]
Length = 338
Score = 45.8 bits (107), Expect = 3e-05
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 27 WVDTHCLCY-DFIITPKSRPEPQWCEVQGLVDERPFLHYD----CVNHKAKAFASLGKKV 81
W +H + Y ++ R EP++ + G VD+ F+ +D C + +A +
Sbjct: 23 WAGSHSMRYFSAAVSRPGRGEPRFIAM-GYVDDTQFVRFDSDSACPRMEPRA---PWVEQ 78
Query: 82 NVTKTWEEQTETLRDVVDFLKGQLLDIQ-VENLIPIEPLTLQARMSCEHEAHGHG-RGSW 139
+ WEE+T + + L ++ N TLQ + C+ + G RG
Sbjct: 79 EGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYE 138
Query: 140 QFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTMFFQKISLGDCKMWLEEFLM 199
Q+ ++G+ +L + + R WTA A+ K E +V + G C WL +L
Sbjct: 139 QYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEA-ANVAEQRRAYLEGTCVEWLHRYLE 197
Query: 200 YWEQMLDPTKPP 211
++ML PP
Sbjct: 198 NGKEMLQRADPP 209
>gi|21040349 hemochromatosis protein isoform 7 precursor [Homo
sapiens]
Length = 260
Score = 44.7 bits (104), Expect = 8e-05
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 120 TLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVT 179
TLQ + CE + G W++ ++GQ L F + W A P A +WE+++
Sbjct: 29 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRA 88
Query: 180 MFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTL 227
+ DC L++ L +LD PP L T + TTL
Sbjct: 89 RQNRAYLERDCPAQLQQLLELGRGVLDQQVPP-LVKVTHHVTSSVTTL 135
>gi|52630342 major histocompatibility complex, class I, C precursor
[Homo sapiens]
Length = 366
Score = 43.9 bits (102), Expect = 1e-04
Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 10/225 (4%)
Query: 15 LLHLLSGWSRAG--WVDTHCLCY-DFIITPKSRPEPQWCEVQGLVDERPFLHYD--CVNH 69
LL LLSG W +H + Y D ++ R EP++ V G VD+ F+ +D +
Sbjct: 9 LLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISV-GYVDDTQFVRFDSDAASP 67
Query: 70 KAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQ-VENLIPIEPLTLQARMSCE 128
+ + A ++ + W+ +T+ + + L +++ N TLQ C+
Sbjct: 68 RGEPRAPWVEQEG-PEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMSGCD 126
Query: 129 HEAHGHG-RGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTMFFQKISL 187
G RG Q ++G+ ++ + + R WTA A+ K E R +
Sbjct: 127 LGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLE- 185
Query: 188 GDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSL 232
G C WL +L ++ L +PP TL W+L
Sbjct: 186 GTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWAL 230
>gi|21040351 hemochromatosis protein isoform 8 precursor [Homo
sapiens]
Length = 246
Score = 40.0 bits (92), Expect = 0.002
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 120 TLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVT 179
TLQ + CE + G W++ ++GQ L F + W A P A +WE+++
Sbjct: 29 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRA 88
Query: 180 MFFQKISLGDCKMWLEEFLMYWEQMLD 206
+ DC L++ L +LD
Sbjct: 89 RQNRAYLERDCPAQLQQLLELGRGVLD 115
>gi|4557751 MHC class I polypeptide-related sequence A [Homo
sapiens]
Length = 383
Score = 37.7 bits (86), Expect = 0.009
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 56 VDERPFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDI--QVENL 113
+D +PFL D +AK + V KTW+ +T L L+ L I Q E L
Sbjct: 51 LDGQPFLRCDRQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGL 110
Query: 114 IPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWT 159
++ + + CE R S F ++G+ FL + ++WT
Sbjct: 111 HSLQEIRV-----CEIHEDNSTRSSQHFYYDGELFLSQNLETKEWT 151
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 29.3 bits (64), Expect = 3.3
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 105 LLDIQVENLIPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPG 164
LL V+ E Q R C + +G R ++++N ++F FDS+ ++ A+
Sbjct: 22 LLTSVVQGRATPENYLFQGRQEC-YAFNGTQRFLERYIYNREEFARFDSDVGEFRAVTEL 80
Query: 165 AKKMTEKWEKNRDV 178
+ E W +D+
Sbjct: 81 GRPAAEYWNSQKDI 94
>gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
Length = 2533
Score = 28.5 bits (62), Expect = 5.6
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 193 WLEEFLMYWEQM---LDPTKPPSLAPGTTQPKAMA 224
+L++++ Y + + L P +PPS A T++P+AMA
Sbjct: 2017 FLQQYVQYLQSIGFVLVPLRPPSPARSTSRPRAMA 2051
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 28.1 bits (61), Expect = 7.3
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 118 PLTLQARMSCEHEAHGHGRGSW--QFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKN 175
P L+ R S H +G R + ++ N ++FL FDS+ ++ A+ + + E W
Sbjct: 34 PRFLELRKSECHFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQ 93
Query: 176 RDV 178
+D+
Sbjct: 94 KDL 96
>gi|239756837 PREDICTED: similar to pleckstrin homology domain
containing, family M (with RUN domain) member 1, partial
[Homo sapiens]
Length = 623
Score = 28.1 bits (61), Expect = 7.3
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 125 MSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTMFFQK 184
+ CE H G ++ +F+G+K AL ++ E W V QK
Sbjct: 146 LRCESVGPAHSDGRFELVFSGKKL-----------ALRASSQDEAEDWLDL--VREALQK 192
Query: 185 ISLGDCKMWLEEFLMYWEQMLDPTKPPS--LAPG--TTQPKAMATTLSPWS 231
+ W+ + Y +Q +P + P L+P ++P A+ T S WS
Sbjct: 193 VRPQQEDEWVN--VQYSDQPEEPPEAPQGCLSPSDLLSEPAALQGTQSDWS 241
>gi|239751418 PREDICTED: hypothetical protein XP_002347841 [Homo
sapiens]
Length = 528
Score = 28.1 bits (61), Expect = 7.3
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 125 MSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTMFFQK 184
+ CE H G ++ +F+G+K AL ++ E W V QK
Sbjct: 63 LRCESVGPAHSDGRFELVFSGKKL-----------ALRASSQDEAEDWLDL--VREALQK 109
Query: 185 ISLGDCKMWLEEFLMYWEQMLDPTKPPS--LAPG--TTQPKAMATTLSPWS 231
+ W+ + Y +Q +P + P L+P ++P A+ T S WS
Sbjct: 110 VRPQQEDEWVN--VQYSDQPEEPPEAPQGCLSPSDLLSEPAALQGTQSDWS 158
>gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens]
Length = 869
Score = 27.7 bits (60), Expect = 9.5
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 19/138 (13%)
Query: 92 ETLRDVVDFLKGQLLDIQVENLIPIEPLTLQARMSCEHEAHGHGRGSWQFLFNGQKFLLF 151
E +RD+ + G++ + L+P EP T+ A + EA Q F + L+
Sbjct: 576 EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMA 631
Query: 152 DSNNRKWTALHPGAKKMTEKWEKNRDVTMFFQKISLGDCKMWLEEFLMYWEQMLDPTKPP 211
+ +N P K+ + + + F+ ++ GD L EFL + + P
Sbjct: 632 EFDN-------PNIVKLLGVCAVGKPMCLLFEYMAYGD----LNEFL----RSMSPHTVC 676
Query: 212 SLAPGTTQPKAMATTLSP 229
SL+ +A ++ P
Sbjct: 677 SLSHSDLSMRAQVSSPGP 694
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,775,935
Number of Sequences: 37866
Number of extensions: 479823
Number of successful extensions: 1280
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 27
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.